About RosaGeno

A comprehensive multi-omics platform facilitating functional genomics and molecular breeding in Rosa through comparative analysis with Rosaceae models.

Data Resources

Core Datasets

The database integrates high-quality genome assemblies and annotations for 12 species:

Rosa Species (7 Cultivars/Wild)
Rosa chinensis Rosa rugosa Rosa multiflora Rosa wichuraiana Rosa laevigata Rosa roxburghii Rosa samantha
Comparative Models (5 Species)
Arabidopsis thaliana Malus domestica (Apple) Prunus persica (Peach) Fragaria vesca (Strawberry) Pyrus communis (Pear)
Phylogenetic Framework

Key Features

Search & Retrieval
  • Multi-mode Gene Search (ID, Name, Function)
  • Keyword Search for functional annotations
  • Batch Retrieval for sequences & data
  • Download Center for genome files
Visualization
  • JBrowse Genome Browser (Structure & Variants)
  • Protein Domain Visualization (Pfam/InterPro)
  • Synteny Visualization (Collinearity blocks)
  • Gene Structure Display
Lab Tools
  • Primer Design (w/ Specificity Check)
  • CRISPR gRNA Design (Off-target check)
  • Restriction Enzyme Analysis
  • Local BLAST (Nucl/Prot)
Comparative
  • Ortholog Search (Based on OrthoFinder)
  • Gene Family Browser (TF & Structural)
  • Phylogenetic Trees (Gene & Family)
  • Enrichment Analysis (GO & KEGG)

Future Roadmap

We are continuously updating RosaGeno. Upcoming features include:

Gene Family Evolutionary Trees (Interactive) Gene Expression Atlas (RNA-seq) Phenotype Database & Search GWAS Data Integration

Contact Us

Developed by Zhang Zhao Laboratory
China Agricultural University

[email protected]

Citation

If you find RosaGeno useful, please cite:

RosaGeno: An integrated multi-omics database for rose functional genomics. (Manuscript in preparation, 2025)