Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

957104 .. 958383

Gene Structure 1280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G03800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGACCACAGAAAAAGAGAATGTCACTACGGCCGTGGCCGTGAAAGACGGCGGAGAAAAGAGTAAGGAAGTGAGTGACAAGGGCGTAAAGAAGAGAAAGAATGTAACTAAGGCCCTGGCCGTGAATGACGGCGGAGAAAAGAGTAAGGAAGTGCGTTACAGGGGTGTAAGGAGGAGACCATGGGGGAGATATGCTGCGGAGATCCGTGATCCGGTAAAGAAAAAACGGGTCTGGCTCGGGTCCTTCAACACGGGGGAGGAAGCCGCCAGAGCCTACGACTCCGCTGCCATAAGGTTTCGAGGATCGAAAGCTACTACTAACTTCCCTCTAATCGGATACTATGGGATTTCTTCGGCGACGCCGGTGAACAACAACCTTTCCGAGACGGTGAGTGATGGAAATGCCAACCTCCCTCTCGTTGGAGACGATGGGAATGCTTTGGCTTCTCCGGTGAACAACACCCTTTCCGAAACGGCGCGTGATGGAACACTTCCATCGGATTGTCACGACATGTTATCTCCGGGGGTGGCTGAAGCGGTTGCTGGATTTTTCTTAGATCTGCCTGAAGTTATTGCGTTGAAAGAGGAGCTTGATCGAGTTTGTCCTGACCAGTTTGAGTCCATTGATATGGGGTTGACTATTGGTCCTCAAACCGCCGTGGAAGAGCCTGAGACTTCCTCCGCCGTGGATTGTAAGCTGCGAATGGAACCGGATCTTGACCTCAACGCAAGTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0016020 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

245

Amino Acids

26.39

Weight (kDa)

5.1

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	52 - 101	4.4e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	478
AciI	CCGC	8 cut(s)	51, 132, 197, 264, 282, 536, 654, 681
AclWI	GGATC	4 cut(s)	196, 203, 310, 720
AcoI	YGGCCR	3 cut(s)	30, 36, 117
AcuI	CTGAAG	2 cut(s)	552, 585
AcyI	GRCGYC	1 cut(s)	359
AfiI	CCNNNNNNNGG	3 cut(s)	211, 332, 419
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	2 cut(s)	247, 580
AhdI	GACNNNNNGTC	1 cut(s)	642
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	3 cut(s)	311, 589, 697
AluI	AGCT	3 cut(s)	311, 589, 697
Alw26I	GTCTC	4 cut(s)	169, 377, 417, 665
AlwI	GGATC	4 cut(s)	196, 203, 310, 720
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	4 cut(s)	30, 36, 111, 117
ApeKI	GCWGC	3 cut(s)	194, 284, 697
AspLEI	GCGC	1 cut(s)	478
AspS9I	GGNCC	3 cut(s)	112, 240, 644
AsuC2I	CCSGG	1 cut(s)	522
AsuHPI	GGTGA	3 cut(s)	376, 400, 463
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	2 cut(s)	240, 644
BbvI	GCAGC	3 cut(s)	181, 271, 684
BccI	CCATC	4 cut(s)	389, 422, 476, 502
BceAI	ACGGC	9 cut(s)	17, 23, 45, 64, 104, 145, 489, 641, 668
BcgI	CGANNNNNNTGC	4 cut(s)	266, 300, 416, 450
BciT130I	CCWGG	1 cut(s)	116
BciVI	GTATCC	1 cut(s)	329
BcnI	CCSGG	1 cut(s)	522
BcoDI	GTCTC	4 cut(s)	169, 377, 417, 665
BfuI	GTATCC	1 cut(s)	329
BglII	AGATCT	1 cut(s)	556
BisI	GCNGC	4 cut(s)	195, 264, 285, 698
BlsI	GCNGC	4 cut(s)	196, 265, 286, 699
Bme1390I	CCNGG	2 cut(s)	116, 522
Bme18I	GGWCC	2 cut(s)	240, 644
BmeRI	GACNNNNNGTC	1 cut(s)	642
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	3 cut(s)	112, 240, 644
BmiI	GGNNCC	2 cut(s)	241, 708
BmrFI	CCNGG	2 cut(s)	116, 522
BplI	GAGNNNNNCTC	2 cut(s)	662, 694
BpuMI	CCSGG	1 cut(s)	522
BsaHI	GRCGYC	1 cut(s)	359
BsaI	GGTCTC	1 cut(s)	169
BsaJI	CCNNGG	6 cut(s)	33, 114, 179, 521, 657, 684
BsaWI	WCCGGW	3 cut(s)	211, 448, 709
Bsc4I	CCNNNNNNNGG	3 cut(s)	211, 332, 419
Bse118I	RCCGGY	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	610
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	6 cut(s)	33, 114, 179, 521, 657, 684
BseLI	CCNNNNNNNGG	3 cut(s)	211, 332, 419
BseMII	CTCAG	1 cut(s)	660
BseNI	ACTGG	1 cut(s)	610
BseRI	GAGGAG	2 cut(s)	187, 599
BseX3I	CGGCCG	1 cut(s)	30
BseXI	GCAGC	3 cut(s)	181, 271, 684
Bsh1236I	CGCG	1 cut(s)	478
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	4 cut(s)	32, 38, 113, 119
BsiEI	CGRYCG	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	5 cut(s)	212, 362, 449, 521, 710
BslFI	GGGAC	1 cut(s)	717
BslI	CCNNNNNNNGG	3 cut(s)	211, 332, 419
BsmAI	GTCTC	4 cut(s)	169, 377, 417, 665
BsmBI	CGTCTC	2 cut(s)	377, 417
BsmFI	GGGAC	1 cut(s)	717
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	4 cut(s)	32, 38, 113, 119
Bso31I	GGTCTC	1 cut(s)	169
BsoBI	CYCGRG	1 cut(s)	236
Bsp143I	GATC	6 cut(s)	201, 208, 302, 556, 592, 712
Bsp19I	CCATGG	1 cut(s)	179
BspACI	CCGC	8 cut(s)	51, 132, 197, 264, 282, 536, 654, 681
BspANI	GGCC	4 cut(s)	32, 38, 113, 119
BspCNI	CTCAG	1 cut(s)	661
BspFNI	CGCG	1 cut(s)	478
BspLI	GGNNCC	2 cut(s)	241, 708
BspPI	GGATC	4 cut(s)	196, 203, 310, 720
BspQI	GCTCTTC	1 cut(s)	657
BspTNI	GGTCTC	1 cut(s)	169
BsrFI	RCCGGY	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	610
BssAI	RCCGGY	1 cut(s)	361
BssECI	CCNNGG	6 cut(s)	33, 114, 179, 521, 657, 684
BssMI	GATC	6 cut(s)	201, 208, 302, 556, 592, 712
BssNI	GRCGYC	1 cut(s)	359
BssT1I	CCWWGG	1 cut(s)	179
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	388
Bst6I	CTCTTC	2 cut(s)	86, 657
BstACI	GRCGYC	1 cut(s)	359
BstDEI	CTNAG	3 cut(s)	108, 553, 669
BstDSI	CCRYGG	4 cut(s)	33, 179, 657, 684
BstFNI	CGCG	1 cut(s)	478
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	6 cut(s)	204, 211, 305, 559, 595, 715
BstMAI	GTCTC	4 cut(s)	169, 377, 417, 665
BstMBI	GATC	6 cut(s)	201, 208, 302, 556, 592, 712
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	1 cut(s)	116
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	2 cut(s)	114, 520
BstUI	CGCG	1 cut(s)	478
BstV1I	GCAGC	3 cut(s)	181, 271, 684
BstX2I	RGATCY	3 cut(s)	201, 556, 712
BstXI	CCANNNNNNTGG	1 cut(s)	628
BstYI	RGATCY	3 cut(s)	201, 556, 712
BstZI	CGGCCG	1 cut(s)	30
BsuI	GTATCC	1 cut(s)	329
BsuRI	GGCC	4 cut(s)	32, 38, 113, 119
BtgI	CCRYGG	4 cut(s)	33, 179, 657, 684
CfoI	GCGC	1 cut(s)	478
Cfr10I	RCCGGY	1 cut(s)	361
Cfr13I	GGNCC	3 cut(s)	112, 240, 644
CseI	GACGC	1 cut(s)	367
CviAII	CATG	2 cut(s)	180, 511
DdeI	CTNAG	3 cut(s)	108, 553, 669
DpnI	GATC	6 cut(s)	203, 210, 304, 558, 594, 714
DpnII	GATC	6 cut(s)	201, 208, 302, 556, 592, 712
DriI	GACNNNNNGTC	1 cut(s)	642
EaeI	YGGCCR	3 cut(s)	30, 36, 117
EagI	CGGCCG	1 cut(s)	30
Eam1104I	CTCTTC	2 cut(s)	86, 657
Eam1105I	GACNNNNNGTC	1 cut(s)	642
EarI	CTCTTC	2 cut(s)	86, 657
EciI	GGCGGA	3 cut(s)	66, 147, 670
EclXI	CGGCCG	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	179
Eco31I	GGTCTC	1 cut(s)	169
Eco47I	GGWCC	2 cut(s)	240, 644
Eco52I	CGGCCG	1 cut(s)	30
Eco57I	CTGAAG	2 cut(s)	552, 585
Eco88I	CYCGRG	1 cut(s)	236
EcoO109I	RGGNCCY	2 cut(s)	112, 240
EcoRII	CCWGG	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	179
Esp3I	CGTCTC	2 cut(s)	377, 417
FaeI	CATG	2 cut(s)	183, 514
FaiI	YATR	6 cut(s)	181, 192, 290, 342, 512, 629
FalI	AAGNNNNNCTT	2 cut(s)	573, 605
FaqI	GGGAC	1 cut(s)	717
FatI	CATG	2 cut(s)	179, 510
Fnu4HI	GCNGC	4 cut(s)	195, 264, 285, 698
Fsp4HI	GCNGC	4 cut(s)	195, 264, 285, 698
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	4 cut(s)	195, 264, 285, 698
HaeIII	GGCC	4 cut(s)	32, 38, 113, 119
HapII	CCGG	5 cut(s)	212, 362, 449, 521, 710
HgaI	GACGC	1 cut(s)	367
HhaI	GCGC	1 cut(s)	478
Hin1I	GRCGYC	1 cut(s)	359
Hin1II	CATG	2 cut(s)	183, 514
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HincII	GTYRAC	1 cut(s)	636
HindII	GTYRAC	1 cut(s)	636
HinfI	GANTC	2 cut(s)	278, 617
HpaII	CCGG	5 cut(s)	212, 362, 449, 521, 710
HphI	GGTGA	3 cut(s)	376, 400, 463
Hpy166II	GTNNAC	3 cut(s)	367, 454, 636
Hpy188I	TCNGA	4 cut(s)	335, 382, 469, 499
Hpy188III	TCNNGA	3 cut(s)	506, 605, 716
Hpy8I	GTNNAC	3 cut(s)	367, 454, 636
Hpy99I	CGWCG	1 cut(s)	361
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	1 cut(s)	388
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	3 cut(s)	108, 553, 669
Hsp92I	GRCGYC	1 cut(s)	359
Hsp92II	CATG	2 cut(s)	183, 514
HspAI	GCGC	1 cut(s)	476
Kzo9I	GATC	6 cut(s)	201, 208, 302, 556, 592, 712
LguI	GCTCTTC	1 cut(s)	657
LmnI	GCTCC	1 cut(s)	586
Lsp1109I	GCAGC	3 cut(s)	181, 271, 684
MaeIII	GTNAC	5 cut(s)	22, 74, 103, 155, 503
MalI	GATC	6 cut(s)	203, 210, 304, 558, 594, 714
MboI	GATC	6 cut(s)	201, 208, 302, 556, 592, 712
MboII	GAAGA	3 cut(s)	103, 342, 674
MflI	RGATCY	3 cut(s)	201, 556, 712
MlyI	GAGTC	2 cut(s)	272, 626
MmeI	TCCRAC	1 cut(s)	400
MslI	CAYNNNNRTG	1 cut(s)	626
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	5 cut(s)	212, 362, 449, 521, 710
MspR9I	CCNGG	2 cut(s)	116, 522
Mva1269I	GAATGC	1 cut(s)	439
MvaI	CCWGG	1 cut(s)	116
MvnI	CGCG	1 cut(s)	478
MwoI	GCNNNNNNNGC	1 cut(s)	269
NciI	CCSGG	1 cut(s)	522
NcoI	CCATGG	1 cut(s)	179
NdeII	GATC	6 cut(s)	201, 208, 302, 556, 592, 712
NlaIII	CATG	2 cut(s)	183, 514
NlaIV	GGNNCC	2 cut(s)	241, 708
NmuCI	GTSAC	3 cut(s)	22, 74, 503
NspI	RCATGY	1 cut(s)	514
PciI	ACATGT	1 cut(s)	510
PciSI	GCTCTTC	1 cut(s)	657
PcsI	WCGNNNNNNNCGW	1 cut(s)	423
PctI	GAATGC	1 cut(s)	439
PkrI	GCNGC	4 cut(s)	196, 265, 286, 699
PleI	GAGTC	2 cut(s)	272, 625
PpsI	GAGTC	2 cut(s)	272, 625
PpuMI	RGGWCCY	1 cut(s)	240
PscI	ACATGT	1 cut(s)	510
Psp5II	RGGWCCY	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	241, 708
PspPI	GGNCC	3 cut(s)	112, 240, 644
PspPPI	RGGWCCY	1 cut(s)	240
PsuI	RGATCY	3 cut(s)	201, 556, 712
RseI	CAYNNNNRTG	1 cut(s)	626
SapI	GCTCTTC	1 cut(s)	657
SatI	GCNGC	4 cut(s)	195, 264, 285, 698
Sau3AI	GATC	6 cut(s)	201, 208, 302, 556, 592, 712
Sau96I	GGNCC	3 cut(s)	112, 240, 644
SchI	GAGTC	2 cut(s)	272, 626
ScrFI	CCNGG	2 cut(s)	116, 522
SetI	ASST	7 cut(s)	296, 313, 378, 411, 591, 699, 723
SgrAI	CRCCGGYG	1 cut(s)	361
SinI	GGWCC	2 cut(s)	240, 644
SmiMI	CAYNNNNRTG	1 cut(s)	626
SsiI	CCGC	8 cut(s)	51, 132, 197, 264, 282, 536, 654, 681
StyD4I	CCNGG	2 cut(s)	114, 520
StyI	CCWWGG	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	388
TaqI	TCGA	3 cut(s)	298, 305, 595
TauI	GCSGC	1 cut(s)	266
TseFI	GTSAC	3 cut(s)	22, 74, 503
TseI	GCWGC	3 cut(s)	194, 284, 697
Tsp45I	GTSAC	3 cut(s)	22, 74, 503
TspGWI	ACGGA	1 cut(s)	194
VpaK11BI	GGWCC	2 cut(s)	240, 644
XceI	RCATGY	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.