Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1882907 .. 1883992

Gene Structure 1086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G06160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAATATCAAACTAACTTCTTAAGTGGAGAGTTTTCCCCGGAGAACTCTTCTTCAAGCTCATGGAGCTCACAAGAATCATTCTTGTGGGAAGAGAGTTTCTTACATCAATCATTTGACCAATCCTTCCTTTTATCTAGCCCTACTGATAACTACTGTGATGACTTCTTTGCATTTGAATCATCAATCATAAAAGAAGAAGGAAAAGAAGCCACCGTGGCGGCCGAGGAGGAGGAGAAGTCATACAGAGGAGTGAGGAAACGGCCGTGGGGGAAATTCGCGGCCGAGATAAGAGACTCAACGAGGAAAGGGATAAGAGTGTGGCTTGGGACATTCGACACCGCGGAGGCGGCGGCTCTCGCTTATGATCAGGCGGCTTTCGCTTTGAAAGGCAGCCTCGCAGTACTCAATTTCCCCGCGGATGTCGTTGAAGAATCTCTCCGGAAGATGGAGAATGTGAATCTCAATGATGGAGAGTCTCCGGTGATAGCCTTGAAGAGAAAACACTCCATGAGAAACCGTCCTAGAGGAAAGAAGAAATCTTCTTCTTCTTCGACGTTGACATCTTCTCCTTCTTCCTCCTCCTCCTATTCATCTTCTTCGTCTTCTTCTTCTTTGTCGTCAAGAAGTAGAAAACAGAGTGTTGTTATGACGCAAGAAAGTAATACAACACTTGTGGTTCTTGAGGATTTAGGTGCTGAATACTTAGAAGAGCTTATGAGATCATGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002376 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009814 GO:0009861 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

244

Amino Acids

27.09

Weight (kDa)

5.12

Isoelectric Point (pI)

72.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	81 - 131	1.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	281, 344, 419
AccIII	TCCGGA	1 cut(s)	441
AciI	CCGC	9 cut(s)	221, 281, 342, 344, 350, 353, 374, 417, 419
AcoI	YGGCCR	3 cut(s)	222, 263, 282
AcsI	RAATTY	1 cut(s)	275
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	448
AflII	CTTAAG	1 cut(s)	22
AgsI	TTSAA	5 cut(s)	57, 179, 388, 431, 496
AluBI	AGCT	3 cut(s)	60, 69, 715
AluI	AGCT	3 cut(s)	60, 69, 715
Alw21I	GWGCWC	1 cut(s)	71
Alw26I	GTCTC	2 cut(s)	288, 483
Aor13HI	TCCGGA	1 cut(s)	441
AoxI	GGCC	3 cut(s)	222, 263, 282
ApeKI	GCWGC	1 cut(s)	393
ApoI	RAATTY	1 cut(s)	275
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	496
BanII	GRGCYC	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	597
Bbv12I	GWGCWC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	405
BccI	CCATC	2 cut(s)	442, 464
BceAI	ACGGC	2 cut(s)	250, 278
BclI	TGATCA	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	2 cut(s)	288, 483
BfaI	CTAG	2 cut(s)	138, 525
BfrI	CTTAAG	1 cut(s)	22
BglI	GCCNNNNNGGC	1 cut(s)	218
BisI	GCNGC	6 cut(s)	222, 282, 351, 354, 375, 394
BlsI	GCNGC	6 cut(s)	223, 283, 352, 355, 376, 395
BmcAI	AGTACT	1 cut(s)	405
Bme1390I	CCNGG	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	41
BpiI	GAAGAC	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	704
BpuMI	CCSGG	1 cut(s)	41
BsaJI	CCNNGG	6 cut(s)	39, 216, 225, 266, 342, 417
BsaWI	WCCGGW	2 cut(s)	441, 481
BsaXI	ACNNNNNCTCC	4 cut(s)	224, 254, 553, 583
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
BseAI	TCCGGA	1 cut(s)	441
BseDI	CCNNGG	6 cut(s)	39, 216, 225, 266, 342, 417
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseRI	GAGGAG	6 cut(s)	242, 245, 248, 264, 571, 574
BseX3I	CGGCCG	3 cut(s)	222, 263, 282
BseXI	GCAGC	1 cut(s)	405
Bsh1236I	CGCG	3 cut(s)	281, 344, 419
Bsh1285I	CGRYCG	3 cut(s)	225, 266, 285
BshFI	GGCC	3 cut(s)	224, 265, 284
BsiEI	CGRYCG	3 cut(s)	225, 266, 285
BsiHKAI	GWGCWC	1 cut(s)	71
BsiSI	CCGG	3 cut(s)	41, 442, 482
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	2 cut(s)	288, 483
BsmFI	GGGAC	1 cut(s)	343
BsnI	GGCC	3 cut(s)	224, 265, 284
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp13I	TCCGGA	1 cut(s)	441
Bsp143I	GATC	2 cut(s)	367, 722
BspACI	CCGC	9 cut(s)	221, 281, 342, 344, 350, 353, 374, 417, 419
BspANI	GGCC	3 cut(s)	224, 265, 284
BspEI	TCCGGA	1 cut(s)	441
BspFNI	CGCG	3 cut(s)	281, 344, 419
BspQI	GCTCTTC	1 cut(s)	705
BspTI	CTTAAG	1 cut(s)	22
BssECI	CCNNGG	6 cut(s)	39, 216, 225, 266, 342, 417
BssMI	GATC	2 cut(s)	367, 722
Bst4CI	ACNGT	3 cut(s)	158, 217, 521
Bst6I	CTCTTC	4 cut(s)	55, 87, 491, 705
BstAFI	CTTAAG	1 cut(s)	22
BstDEI	CTNAG	1 cut(s)	706
BstDSI	CCRYGG	4 cut(s)	216, 266, 342, 417
BstF5I	GGATG	1 cut(s)	427
BstFNI	CGCG	3 cut(s)	281, 344, 419
BstKTI	GATC	2 cut(s)	370, 725
BstMAI	GTCTC	2 cut(s)	288, 483
BstMBI	GATC	2 cut(s)	367, 722
BstMCI	CGRYCG	3 cut(s)	225, 266, 285
BstMWI	GCNNNNNNNGC	5 cut(s)	66, 218, 350, 359, 380
BstSCI	CCNGG	1 cut(s)	39
BstUI	CGCG	3 cut(s)	281, 344, 419
BstV1I	GCAGC	1 cut(s)	405
BstV2I	GAAGAC	1 cut(s)	597
BstZI	CGGCCG	3 cut(s)	222, 263, 282
BsuRI	GGCC	3 cut(s)	224, 265, 284
BtgI	CCRYGG	4 cut(s)	216, 266, 342, 417
BtsCI	GGATG	1 cut(s)	427
Cfr42I	CCGCGG	2 cut(s)	345, 420
CseI	GACGC	1 cut(s)	661
Csp6I	GTAC	1 cut(s)	404
CspCI	CAANNNNNGTGG	2 cut(s)	657, 692
CviAII	CATG	3 cut(s)	63, 511, 726
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	1 cut(s)	706
DpnI	GATC	2 cut(s)	369, 724
DpnII	GATC	2 cut(s)	367, 722
EaeI	YGGCCR	3 cut(s)	222, 263, 282
EagI	CGGCCG	3 cut(s)	222, 263, 282
Eam1104I	CTCTTC	4 cut(s)	55, 87, 491, 705
EarI	CTCTTC	4 cut(s)	55, 87, 491, 705
Ecl136II	GAGCTC	1 cut(s)	69
EclXI	CGGCCG	3 cut(s)	222, 263, 282
Eco24I	GRGCYC	1 cut(s)	71
Eco52I	CGGCCG	3 cut(s)	222, 263, 282
Eco53kI	GAGCTC	1 cut(s)	69
EcoICRI	GAGCTC	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	71
FaeI	CATG	3 cut(s)	66, 514, 729
FaiI	YATR	8 cut(s)	64, 191, 244, 366, 512, 650, 719, 727
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	3 cut(s)	62, 510, 725
FauI	CCCGC	1 cut(s)	424
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	6 cut(s)	222, 282, 351, 354, 375, 394
FokI	GGATG	1 cut(s)	434
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	6 cut(s)	222, 282, 351, 354, 375, 394
FspBI	CTAG	2 cut(s)	138, 525
GluI	GCNGC	6 cut(s)	222, 282, 351, 354, 375, 394
HaeIII	GGCC	3 cut(s)	224, 265, 284
HapII	CCGG	3 cut(s)	41, 442, 482
HgaI	GACGC	1 cut(s)	661
Hin1II	CATG	3 cut(s)	66, 514, 729
HincII	GTYRAC	1 cut(s)	561
HindII	GTYRAC	1 cut(s)	561
HinfI	GANTC	6 cut(s)	77, 179, 296, 434, 460, 476
HpaII	CCGG	3 cut(s)	41, 442, 482
HphI	GGTGA	1 cut(s)	496
Hpy166II	GTNNAC	1 cut(s)	561
Hpy188III	TCNNGA	4 cut(s)	442, 624, 683, 732
Hpy8I	GTNNAC	1 cut(s)	561
Hpy99I	CGWCG	1 cut(s)	559
HpyAV	CCTTC	3 cut(s)	136, 194, 582
HpyCH4III	ACNGT	3 cut(s)	158, 217, 521
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	1 cut(s)	173
HpyF10VI	GCNNNNNNNGC	5 cut(s)	66, 218, 350, 359, 380
HpyF3I	CTNAG	1 cut(s)	706
HpySE526I	ACGT	1 cut(s)	557
Hsp92II	CATG	3 cut(s)	66, 514, 729
Kpn2I	TCCGGA	1 cut(s)	441
Ksp22I	TGATCA	1 cut(s)	367
KspI	CCGCGG	2 cut(s)	345, 420
Kzo9I	GATC	2 cut(s)	367, 722
LguI	GCTCTTC	1 cut(s)	705
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	4 cut(s)	54, 356, 455, 495
Lsp1109I	GCAGC	1 cut(s)	405
MaeI	CTAG	2 cut(s)	138, 525
MaeII	ACGT	1 cut(s)	557
MalI	GATC	2 cut(s)	369, 724
MboI	GATC	2 cut(s)	367, 722
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	2 cut(s)	275, 409
MlyI	GAGTC	2 cut(s)	290, 485
MroI	TCCGGA	1 cut(s)	441
MseI	TTAA	1 cut(s)	23
MslI	CAYNNNNRTG	1 cut(s)	85
MspA1I	CMGCKG	2 cut(s)	344, 419
MspCI	CTTAAG	1 cut(s)	22
MspI	CCGG	3 cut(s)	41, 442, 482
MspR9I	CCNGG	1 cut(s)	41
MvnI	CGCG	3 cut(s)	281, 344, 419
MwoI	GCNNNNNNNGC	5 cut(s)	66, 218, 350, 359, 380
NciI	CCSGG	1 cut(s)	41
NdeII	GATC	2 cut(s)	367, 722
NlaIII	CATG	3 cut(s)	66, 514, 729
NmeAIII	GCCGAG	2 cut(s)	250, 310
PciSI	GCTCTTC	1 cut(s)	705
PfeI	GAWTC	4 cut(s)	77, 179, 434, 460
PkrI	GCNGC	6 cut(s)	223, 283, 352, 355, 376, 395
PleI	GAGTC	2 cut(s)	290, 484
PpsI	GAGTC	2 cut(s)	290, 484
Psp124BI	GAGCTC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
RseI	CAYNNNNRTG	1 cut(s)	85
SacI	GAGCTC	1 cut(s)	71
SacII	CCGCGG	2 cut(s)	345, 420
SapI	GCTCTTC	1 cut(s)	705
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	6 cut(s)	222, 282, 351, 354, 375, 394
Sau3AI	GATC	2 cut(s)	367, 722
ScaI	AGTACT	1 cut(s)	405
SchI	GAGTC	2 cut(s)	290, 485
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	5 cut(s)	62, 71, 560, 697, 717
Sfr303I	CCGCGG	2 cut(s)	345, 420
SgrBI	CCGCGG	2 cut(s)	345, 420
SmiMI	CAYNNNNRTG	1 cut(s)	85
SmlI	CTYRAG	2 cut(s)	22, 683
SmoI	CTYRAG	2 cut(s)	22, 683
Sse9I	AATT	2 cut(s)	275, 409
SsiI	CCGC	9 cut(s)	221, 281, 342, 344, 350, 353, 374, 417, 419
SspMI	CTAG	2 cut(s)	138, 525
SstI	GAGCTC	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	39
TaaI	ACNGT	3 cut(s)	158, 217, 521
TaiI	ACGT	1 cut(s)	560
TaqI	TCGA	2 cut(s)	336, 554
TasI	AATT	2 cut(s)	275, 409
TatI	WGTACW	1 cut(s)	403
TauI	GCSGC	5 cut(s)	224, 284, 353, 356, 377
TfiI	GAWTC	4 cut(s)	77, 179, 434, 460
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TseI	GCWGC	1 cut(s)	393
TspDTI	ATGAA	1 cut(s)	582
Vha464I	CTTAAG	1 cut(s)	22
XapI	RAATTY	1 cut(s)	275
XspI	CTAG	2 cut(s)	138, 525
ZrmI	AGTACT	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.