Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1889362 .. 1891276

Gene Structure 1915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G06180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGGGAGAAGACCATGCTGTGAGAAGATAGGATTGAAGAAAGGGCCATGGAGTGCTGAAGAAGATCGAATCTTGATCAATTATATTAGTCTCCATGGCCATCCCAATTGGAGAGCTCTCCCTAAACTAGCCGGGCTACTTCGGTGCGGAAAAAGTTGCAGGCTTCGTTGGATTAATTATTTGAGACCAGACATCAAACGTGGCAATTTCACTCCTCATGAAGAAGATACTATCATCAGCTTACATCAACTCTTAGGCAACAGATGGTCTGCGATAGCTGCAAAATTGCCTGGACGAACAGACAACGAAATTAAAAATGTTTGGCACACTCATTTAAAGAAAAGACTCCACCACAGTCAAGATCAAAACAACAAGGAAGATTTCGTCTCTACTACAGCTGCGGAGATGCCAACCTCTCCGCAACAACAATCTAGTAGTAGTGCCGACATTTCAGCAATTACAACATTGGGAAACAACAATGACATCTCCAATAGCAACAAAGACTCCGCGACGTCATCCGAAGATGTTCTTGCAATTATAGATGAGAGCTTTTGGTCAGAAGTGGTATTGATGGACTGTGACATTTCAGGAAATGAGAAGAATGAGAAAAAGATAGAGAATTGGGAGGGCTCACTAGATAGAAACGATAAGGGATATAACCATGACATGGAGTTTTGGTTTGACCATCTCACTAGTAGTAGTTGTATAATTGGAGAAATGTCCGACATTTCTGAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048580 GO:0048831 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

246

Amino Acids

27.95

Weight (kDa)

5.81

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	1.8e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	1.3e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	1.4e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 125	1.3e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	515
AccB7I	CCANNNNNTGG	1 cut(s)	667
AccII	CGCG	1 cut(s)	509
AciI	CCGC	4 cut(s)	147, 401, 419, 507
AcoI	YGGCCR	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	512
AfiI	CCNNNNNNNGG	1 cut(s)	667
AgsI	TTSAA	1 cut(s)	37
AhlI	ACTAGT	1 cut(s)	692
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	5 cut(s)	116, 240, 278, 398, 549
AluI	AGCT	5 cut(s)	116, 240, 278, 398, 549
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	3 cut(s)	95, 178, 391
AoxI	GGCC	2 cut(s)	44, 97
ApeKI	GCWGC	2 cut(s)	278, 398
AseI	ATTAAT	1 cut(s)	174
Asp700I	GAANNNNTTC	1 cut(s)	525
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	133
BalI	TGGCCA	1 cut(s)	99
BanII	GRGCYC	2 cut(s)	118, 632
BbsI	GAAGAC	1 cut(s)	16
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	265, 385
BccI	CCATC	4 cut(s)	108, 258, 565, 693
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	1 cut(s)	75
BcnI	CCSGG	1 cut(s)	133
BcoDI	GTCTC	3 cut(s)	95, 178, 391
BcuI	ACTAGT	1 cut(s)	692
BfaI	CTAG	4 cut(s)	128, 432, 635, 693
BfmI	CTRYAG	1 cut(s)	393
BisI	GCNGC	2 cut(s)	279, 399
BlsI	GCNGC	2 cut(s)	280, 400
Bme1390I	CCNGG	2 cut(s)	133, 291
BmgT120I	GGNCC	1 cut(s)	44
BmrFI	CCNGG	2 cut(s)	133, 291
BmsI	GCATC	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	512
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	47, 94
BsaXI	ACNNNNNCTCC	4 cut(s)	488, 518, 662, 692
Bsc4I	CCNNNNNNNGG	1 cut(s)	667
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	47, 94
BseGI	GGATG	2 cut(s)	100, 515
BseLI	CCNNNNNNNGG	1 cut(s)	667
BseMII	CTCAG	1 cut(s)	723
BseRI	GAGGAG	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	265, 385
Bsh1236I	CGCG	1 cut(s)	509
BshFI	GGCC	2 cut(s)	46, 99
BsiHKAI	GWGCWC	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	667
BsmAI	GTCTC	3 cut(s)	95, 178, 391
BsmBI	CGTCTC	1 cut(s)	391
BsnI	GGCC	2 cut(s)	46, 99
Bso31I	GGTCTC	1 cut(s)	178
Bsp1286I	GDGCHC	2 cut(s)	118, 632
Bsp143I	GATC	3 cut(s)	64, 75, 361
Bsp19I	CCATGG	2 cut(s)	47, 94
BspACI	CCGC	4 cut(s)	147, 401, 419, 507
BspANI	GGCC	2 cut(s)	46, 99
BspCNI	CTCAG	1 cut(s)	724
BspFNI	CGCG	1 cut(s)	509
BspHI	TCATGA	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	47, 94
BssMI	GATC	3 cut(s)	64, 75, 361
BssNI	GRCGYC	1 cut(s)	512
BssT1I	CCWWGG	2 cut(s)	47, 94
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	356, 578
BstACI	GRCGYC	1 cut(s)	512
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	2 cut(s)	253, 732
BstDSI	CCRYGG	2 cut(s)	47, 94
BstF5I	GGATG	2 cut(s)	100, 515
BstFNI	CGCG	1 cut(s)	509
BstKTI	GATC	3 cut(s)	67, 78, 364
BstMAI	GTCTC	3 cut(s)	95, 178, 391
BstMBI	GATC	3 cut(s)	64, 75, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	2 cut(s)	131, 289
BstSFI	CTRYAG	1 cut(s)	393
BstUI	CGCG	1 cut(s)	509
BstV1I	GCAGC	2 cut(s)	265, 385
BstV2I	GAAGAC	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	46, 99
BtgI	CCRYGG	2 cut(s)	47, 94
BtsCI	GGATG	2 cut(s)	100, 515
Cac8I	GCNNGC	1 cut(s)	161
CciI	TCATGA	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	44
CviAII	CATG	6 cut(s)	15, 48, 95, 218, 662, 667
DdeI	CTNAG	2 cut(s)	253, 732
DpnI	GATC	3 cut(s)	66, 77, 363
DpnII	GATC	3 cut(s)	64, 75, 361
DraI	TTTAAA	1 cut(s)	336
EaeI	YGGCCR	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	2 cut(s)	47, 94
Eco24I	GRGCYC	2 cut(s)	118, 632
Eco31I	GGTCTC	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	47, 94
EcoT38I	GRGCYC	2 cut(s)	118, 632
ErhI	CCWWGG	2 cut(s)	47, 94
Esp3I	CGTCTC	1 cut(s)	391
FaeI	CATG	6 cut(s)	18, 51, 98, 221, 665, 670
FalI	AAGNNNNNCTT	2 cut(s)	513, 545
FatI	CATG	6 cut(s)	14, 47, 94, 217, 661, 666
FbaI	TGATCA	1 cut(s)	75
Fnu4HI	GCNGC	2 cut(s)	279, 399
FokI	GGATG	2 cut(s)	87, 502
FriOI	GRGCYC	2 cut(s)	118, 632
Fsp4HI	GCNGC	2 cut(s)	279, 399
FspBI	CTAG	4 cut(s)	128, 432, 635, 693
GluI	GCNGC	2 cut(s)	279, 399
HaeIII	GGCC	2 cut(s)	46, 99
HapII	CCGG	1 cut(s)	132
Hin1I	GRCGYC	1 cut(s)	512
Hin1II	CATG	6 cut(s)	18, 51, 98, 221, 665, 670
HinfI	GANTC	3 cut(s)	69, 345, 503
HpaII	CCGG	1 cut(s)	132
Hpy188I	TCNGA	4 cut(s)	520, 559, 724, 733
Hpy188III	TCNNGA	4 cut(s)	73, 218, 359, 588
Hpy99I	CGWCG	1 cut(s)	514
HpyCH4III	ACNGT	2 cut(s)	356, 578
HpyCH4IV	ACGT	2 cut(s)	199, 512
HpyCH4V	TGCA	3 cut(s)	159, 281, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	2 cut(s)	253, 732
HpySE526I	ACGT	2 cut(s)	199, 512
Hsp92I	GRCGYC	1 cut(s)	512
Hsp92II	CATG	6 cut(s)	18, 51, 98, 221, 665, 670
Ksp22I	TGATCA	1 cut(s)	75
Kzo9I	GATC	3 cut(s)	64, 75, 361
LpnPI	CCDG	6 cut(s)	145, 145, 201, 276, 303, 573
Lsp1109I	GCAGC	2 cut(s)	265, 385
LweI	GCATC	1 cut(s)	396
MaeI	CTAG	4 cut(s)	128, 432, 635, 693
MaeII	ACGT	2 cut(s)	199, 512
MaeIII	GTNAC	1 cut(s)	578
MalI	GATC	3 cut(s)	66, 77, 363
MboI	GATC	3 cut(s)	64, 75, 361
MfeI	CAATTG	1 cut(s)	106
MhlI	GDGCHC	2 cut(s)	118, 632
MlsI	TGGCCA	1 cut(s)	99
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	2 cut(s)	339, 497
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	3 cut(s)	225, 424, 619
Mox20I	TGGCCA	1 cut(s)	99
MroXI	GAANNNNTTC	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	3 cut(s)	174, 312, 335
Msp20I	TGGCCA	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	2 cut(s)	133, 291
MunI	CAATTG	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	509
MwoI	GCNNNNNNNGC	1 cut(s)	278
NciI	CCSGG	1 cut(s)	133
NcoI	CCATGG	2 cut(s)	47, 94
NdeII	GATC	3 cut(s)	64, 75, 361
NlaIII	CATG	6 cut(s)	18, 51, 98, 221, 665, 670
NmuCI	GTSAC	1 cut(s)	578
PagI	TCATGA	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	1 cut(s)	69
PflMI	CCANNNNNTGG	1 cut(s)	667
PkrI	GCNGC	2 cut(s)	280, 400
PleI	GAGTC	2 cut(s)	339, 497
PpsI	GAGTC	2 cut(s)	339, 497
PshBI	ATTAAT	1 cut(s)	174
Psp124BI	GAGCTC	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	398
SacI	GAGCTC	1 cut(s)	118
SaqAI	TTAA	3 cut(s)	174, 312, 335
SatI	GCNGC	2 cut(s)	279, 399
Sau3AI	GATC	3 cut(s)	64, 75, 361
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	2 cut(s)	339, 497
ScrFI	CCNGG	2 cut(s)	133, 291
SduI	GDGCHC	2 cut(s)	118, 632
SetI	ASST	8 cut(s)	118, 202, 242, 280, 400, 416, 515, 551
SfaNI	GCATC	1 cut(s)	396
SfcI	CTRYAG	1 cut(s)	393
SpeI	ACTAGT	1 cut(s)	692
SsiI	CCGC	4 cut(s)	147, 401, 419, 507
SspMI	CTAG	4 cut(s)	128, 432, 635, 693
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	2 cut(s)	131, 289
StyI	CCWWGG	2 cut(s)	47, 94
TaaI	ACNGT	2 cut(s)	356, 578
TaiI	ACGT	2 cut(s)	202, 515
TaqI	TCGA	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	69
Tru1I	TTAA	3 cut(s)	174, 312, 335
Tru9I	TTAA	3 cut(s)	174, 312, 335
TseFI	GTSAC	1 cut(s)	578
TseI	GCWGC	2 cut(s)	278, 398
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	1 cut(s)	234
Van91I	CCANNNNNTGG	1 cut(s)	667
VspI	ATTAAT	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	4 cut(s)	128, 432, 635, 693
ZraI	GACGTC	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.