Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3086101 .. 3087914

Gene Structure 1814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G09540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGGAGACATTCTTGCTGTTACAAACAAAAGCTGAGGAAAGGGCTTTGGTCTCCTGAAGAAGACGAGAAGCTTCTTACTCACATCACCAATCACGGCCATGGCTGCTGGAGCTCTGTCCCTAAACTCGCTGGTTTGCAGAGATGTGGGAAGAGTTGTCGACTAAGATGGATCAATTACTTGAGACCTGATTTAAAGAGAGGAGCTTTTTCTCCTGAAGAAGAGAATCTCATCGTCGAACTTCATGCCGTCCTTGGAAACAGATGGTCACAGATTGCGTCAAGGCTTCCGGGTAGAACCGACAACGAGATCAAGAATCTATGGAACTCAAGCATCAAGAAGAAACTGAAACAAAGAGGCATTGACCCAAACACACACAAGCCCATCTCTGAAGTTGAGAGTTTTAGCGACAAAGACAAACCAACAACAAGCAACAACAAAAGAAGCGGTAACGATCACAAGTCTCCTAGTTCCTCTTCTGCGACTAACCAAGACTTCTTCCTCGAAAGGCCATCTGATTTATCCGACTACTTCGGATTTCAGAAGCTTAACTTCAACTCCAATCTAGGACTCTCTGTTACAACTGATTCTTCACTCTGCTCGATGATTCCGCCGCAGTTTAGCCCCGGGAACATGGTTGGTTCTGTCCTTCAGACACCAGTATGCGTAAAGCCCTCGATTAGTCTTCCTCCCGACAACAACAGTTCGAGTCCTATCTCCGGAGGAGATCATGTGAAATTGGCTGCACCAAACTGGGAATTTCAGACAAACAACAATAATACCTCAAATTTCTTCGACAATGGCGGATTCTCATGGTCTATCCCAAATTCTTCTACTTCTTCTTCACAAGTCAAACCAAATCATAACTTCGAAGAAATAAAATGGTCAGAGTATTTGAACACACCGTTCTTCATAGGGAGTACTGTACAGAGTCAAACCTCTCAACCAATCTACATCAAATCAGAAACAGATTACTTAGCCAATGTTTCAAACATGACAGATCCTTGGAGCCAAAACGAGAACTTGGGCACAACTGAAACTAGTGACGTGTTCTCCAAGGATCTTCAGAGAATGGCCGTCTCTTTTGGTCAGTCCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010119 GO:0010154 GO:0010214 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

366

Amino Acids

40.89

Weight (kDa)

8.1

Isoelectric Point (pI)

52.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	1e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	2.3e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 110	1.7e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 119	2.3e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	160
AccIII	TCCGGA	1 cut(s)	719
AciI	CCGC	4 cut(s)	447, 611, 614, 804
AclWI	GGATC	3 cut(s)	179, 995, 1068
AcoI	YGGCCR	2 cut(s)	97, 1074
AcsI	RAATTY	3 cut(s)	758, 787, 826
AcuI	CTGAAG	5 cut(s)	78, 237, 411, 635, 1049
AfaI	GTAC	2 cut(s)	922, 927
AfiI	CCNNNNNNNGG	1 cut(s)	719
AflIII	ACRYGT	1 cut(s)	1047
AgsI	TTSAA	3 cut(s)	556, 898, 990
AhlI	ACTAGT	1 cut(s)	1040
AjiI	CACGTC	1 cut(s)	1048
AluBI	AGCT	5 cut(s)	34, 73, 114, 206, 547
AluI	AGCT	5 cut(s)	34, 73, 114, 206, 547
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	4 cut(s)	57, 178, 468, 1084
AlwI	GGATC	3 cut(s)	179, 995, 1068
Ama87I	CYCGRG	1 cut(s)	626
Aor13HI	TCCGGA	1 cut(s)	719
AoxI	GGCC	3 cut(s)	97, 509, 1074
ApeKI	GCWGC	2 cut(s)	105, 743
ApoI	RAATTY	3 cut(s)	758, 787, 826
AsuC2I	CCSGG	3 cut(s)	291, 627, 628
AsuHPI	GGTGA	1 cut(s)	79
AsuII	TTCGAA	1 cut(s)	870
AvaI	CYCGRG	1 cut(s)	626
BaeGI	GKGCMC	1 cut(s)	1031
BanII	GRGCYC	1 cut(s)	116
BbsI	GAAGAC	2 cut(s)	69, 677
Bbv12I	GWGCWC	1 cut(s)	116
BbvCI	CCTCAGC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	92, 730
BccI	CCATC	4 cut(s)	162, 258, 392, 520
BceAI	ACGGC	3 cut(s)	112, 233, 1061
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BcnI	CCSGG	3 cut(s)	291, 627, 628
BcoDI	GTCTC	4 cut(s)	57, 178, 468, 1084
BcuI	ACTAGT	1 cut(s)	1040
BfaI	CTAG	3 cut(s)	468, 566, 1041
BisI	GCNGC	3 cut(s)	106, 614, 744
BlsI	GCNGC	3 cut(s)	107, 615, 745
BmcAI	AGTACT	1 cut(s)	922
Bme1390I	CCNGG	3 cut(s)	291, 627, 628
BmeT110I	CYCGRG	1 cut(s)	626
BmgBI	CACGTC	1 cut(s)	1048
BmiI	GGNNCC	1 cut(s)	1010
BmrFI	CCNGG	3 cut(s)	291, 627, 628
BmrI	ACTGGG	1 cut(s)	763
BmsI	GCATC	1 cut(s)	342
BmuI	ACTGGG	1 cut(s)	763
BpiI	GAAGAC	2 cut(s)	69, 677
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	870
BpuEI	CTTGAG	2 cut(s)	202, 313
BpuMI	CCSGG	3 cut(s)	291, 627, 628
BsaI	GGTCTC	2 cut(s)	57, 178
BsaJI	CCNNGG	6 cut(s)	100, 253, 625, 626, 1004, 1056
BsaWI	WCCGGW	1 cut(s)	719
BsaXI	ACNNNNNCTCC	6 cut(s)	542, 572, 717, 747, 1037, 1067
Bsc4I	CCNNNNNNNGG	1 cut(s)	719
Bse1I	ACTGG	2 cut(s)	659, 758
BseAI	TCCGGA	1 cut(s)	719
BseDI	CCNNGG	6 cut(s)	100, 253, 625, 626, 1004, 1056
BseLI	CCNNNNNNNGG	1 cut(s)	719
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	2 cut(s)	659, 758
BseRI	GAGGAG	2 cut(s)	216, 738
BseSI	GKGCMC	1 cut(s)	1031
BseXI	GCAGC	2 cut(s)	92, 730
BsgI	GTGCAG	1 cut(s)	729
BshFI	GGCC	3 cut(s)	99, 511, 1076
BsiHKAI	GWGCWC	1 cut(s)	116
BsiHKCI	CYCGRG	1 cut(s)	626
BsiSI	CCGG	3 cut(s)	290, 627, 720
BslFI	GGGAC	2 cut(s)	104, 1078
BslI	CCNNNNNNNGG	1 cut(s)	719
BsmAI	GTCTC	4 cut(s)	57, 178, 468, 1084
BsmBI	CGTCTC	1 cut(s)	1084
BsmFI	GGGAC	2 cut(s)	104, 1078
BsnI	GGCC	3 cut(s)	99, 511, 1076
Bso31I	GGTCTC	2 cut(s)	57, 178
BsoBI	CYCGRG	1 cut(s)	626
Bsp119I	TTCGAA	1 cut(s)	870
Bsp1286I	GDGCHC	2 cut(s)	116, 1031
Bsp13I	TCCGGA	1 cut(s)	719
Bsp1407I	TGTACA	1 cut(s)	925
Bsp143I	GATC	6 cut(s)	171, 309, 454, 727, 1000, 1060
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	4 cut(s)	447, 611, 614, 804
BspANI	GGCC	3 cut(s)	99, 511, 1076
BspCNI	CTCAG	1 cut(s)	27
BspEI	TCCGGA	1 cut(s)	719
BspLI	GGNNCC	1 cut(s)	1010
BspPI	GGATC	3 cut(s)	179, 995, 1068
BspT104I	TTCGAA	1 cut(s)	870
BspTNI	GGTCTC	2 cut(s)	57, 178
BsrGI	TGTACA	1 cut(s)	925
BsrI	ACTGG	2 cut(s)	659, 758
BssECI	CCNNGG	6 cut(s)	100, 253, 625, 626, 1004, 1056
BssMI	GATC	6 cut(s)	171, 309, 454, 727, 1000, 1060
BssT1I	CCWWGG	4 cut(s)	100, 253, 1004, 1056
Bst4CI	ACNGT	3 cut(s)	704, 906, 925
Bst6I	CTCTTC	3 cut(s)	146, 216, 481
BstAUI	TGTACA	1 cut(s)	925
BstBI	TTCGAA	1 cut(s)	870
BstDEI	CTNAG	3 cut(s)	35, 164, 976
BstDSI	CCRYGG	1 cut(s)	100
BstKTI	GATC	6 cut(s)	174, 312, 457, 730, 1003, 1063
BstMAI	GTCTC	4 cut(s)	57, 178, 468, 1084
BstMBI	GATC	6 cut(s)	171, 309, 454, 727, 1000, 1060
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 111
BstSCI	CCNGG	3 cut(s)	289, 625, 626
BstSLI	GKGCMC	1 cut(s)	1031
BstV1I	GCAGC	2 cut(s)	92, 730
BstV2I	GAAGAC	2 cut(s)	69, 677
BstX2I	RGATCY	2 cut(s)	1000, 1060
BstYI	RGATCY	2 cut(s)	1000, 1060
BsuRI	GGCC	3 cut(s)	99, 511, 1076
BtgI	CCRYGG	1 cut(s)	100
BtrI	CACGTC	1 cut(s)	1048
Cfr9I	CCCGGG	1 cut(s)	626
CseI	GACGC	1 cut(s)	267
Csp6I	GTAC	2 cut(s)	921, 926
CviAII	CATG	6 cut(s)	101, 245, 634, 731, 813, 994
CviQI	GTAC	2 cut(s)	921, 926
DdeI	CTNAG	3 cut(s)	35, 164, 976
DpnI	GATC	6 cut(s)	173, 311, 456, 729, 1002, 1062
DpnII	GATC	6 cut(s)	171, 309, 454, 727, 1000, 1060
DraI	TTTAAA	1 cut(s)	195
EaeI	YGGCCR	2 cut(s)	97, 1074
Eam1104I	CTCTTC	3 cut(s)	146, 216, 481
EarI	CTCTTC	3 cut(s)	146, 216, 481
EciI	GGCGGA	2 cut(s)	600, 819
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	4 cut(s)	100, 253, 1004, 1056
Eco24I	GRGCYC	1 cut(s)	116
Eco31I	GGTCTC	2 cut(s)	57, 178
Eco53kI	GAGCTC	1 cut(s)	114
Eco57I	CTGAAG	5 cut(s)	78, 237, 411, 635, 1049
Eco88I	CYCGRG	1 cut(s)	626
EcoICRI	GAGCTC	1 cut(s)	114
EcoT14I	CCWWGG	4 cut(s)	100, 253, 1004, 1056
EcoT38I	GRGCYC	1 cut(s)	116
ErhI	CCWWGG	4 cut(s)	100, 253, 1004, 1056
Esp3I	CGTCTC	1 cut(s)	1084
FaeI	CATG	6 cut(s)	104, 248, 637, 734, 816, 997
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FaqI	GGGAC	2 cut(s)	104, 1078
FatI	CATG	6 cut(s)	100, 244, 633, 730, 812, 993
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	3 cut(s)	106, 614, 744
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	3 cut(s)	106, 614, 744
FspBI	CTAG	3 cut(s)	468, 566, 1041
GluI	GCNGC	3 cut(s)	106, 614, 744
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	3 cut(s)	99, 511, 1076
HapII	CCGG	3 cut(s)	290, 627, 720
HgaI	GACGC	1 cut(s)	267
Hin1II	CATG	6 cut(s)	104, 248, 637, 734, 816, 997
HincII	GTYRAC	1 cut(s)	161
HindII	GTYRAC	1 cut(s)	161
HindIII	AAGCTT	2 cut(s)	71, 545
HinfI	GANTC	8 cut(s)	226, 316, 570, 587, 607, 709, 807, 931
HpaII	CCGG	3 cut(s)	290, 627, 720
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188III	TCNNGA	6 cut(s)	56, 215, 313, 337, 692, 720
Hpy8I	GTNNAC	1 cut(s)	161
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	659
HpyCH4III	ACNGT	3 cut(s)	704, 906, 925
HpyCH4IV	ACGT	1 cut(s)	1047
HpyCH4V	TGCA	2 cut(s)	139, 746
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 111
HpyF3I	CTNAG	3 cut(s)	35, 164, 976
HpySE526I	ACGT	1 cut(s)	1047
Hsp92II	CATG	6 cut(s)	104, 248, 637, 734, 816, 997
Kpn2I	TCCGGA	1 cut(s)	719
Kzo9I	GATC	6 cut(s)	171, 309, 454, 727, 1000, 1060
LmnI	GCTCC	3 cut(s)	111, 203, 1008
Lsp1109I	GCAGC	2 cut(s)	92, 730
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	3 cut(s)	468, 566, 1041
MaeII	ACGT	1 cut(s)	1047
MaeIII	GTNAC	5 cut(s)	20, 267, 449, 577, 1043
MalI	GATC	6 cut(s)	173, 311, 456, 729, 1002, 1062
MboI	GATC	6 cut(s)	171, 309, 454, 727, 1000, 1060
MflI	RGATCY	2 cut(s)	1000, 1060
MhlI	GDGCHC	2 cut(s)	116, 1031
MluCI	AATT	5 cut(s)	175, 737, 758, 787, 826
MlyI	GAGTC	3 cut(s)	564, 718, 940
MmeI	TCCRAC	1 cut(s)	549
MroI	TCCGGA	1 cut(s)	719
MseI	TTAA	2 cut(s)	194, 549
MslI	CAYNNNNRTG	2 cut(s)	99, 661
MspI	CCGG	3 cut(s)	290, 627, 720
MspR9I	CCNGG	3 cut(s)	291, 627, 628
MwoI	GCNNNNNNNGC	2 cut(s)	105, 111
NciI	CCSGG	3 cut(s)	291, 627, 628
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	6 cut(s)	171, 309, 454, 727, 1000, 1060
NlaIII	CATG	6 cut(s)	104, 248, 637, 734, 816, 997
NlaIV	GGNNCC	1 cut(s)	1010
NmuCI	GTSAC	2 cut(s)	267, 1043
NspV	TTCGAA	1 cut(s)	870
PfeI	GAWTC	5 cut(s)	226, 316, 587, 607, 807
PkrI	GCNGC	3 cut(s)	107, 615, 745
PleI	GAGTC	3 cut(s)	564, 717, 939
PpsI	GAGTC	3 cut(s)	564, 717, 939
Psp124BI	GAGCTC	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	1010
PsuI	RGATCY	2 cut(s)	1000, 1060
RsaI	GTAC	2 cut(s)	922, 927
RsaNI	GTAC	2 cut(s)	921, 926
RseI	CAYNNNNRTG	2 cut(s)	99, 661
SacI	GAGCTC	1 cut(s)	116
SalI	GTCGAC	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	194, 549
SatI	GCNGC	3 cut(s)	106, 614, 744
Sau3AI	GATC	6 cut(s)	171, 309, 454, 727, 1000, 1060
ScaI	AGTACT	1 cut(s)	922
SchI	GAGTC	3 cut(s)	564, 718, 940
ScrFI	CCNGG	3 cut(s)	291, 627, 628
SduI	GDGCHC	2 cut(s)	116, 1031
SetI	ASST	9 cut(s)	36, 75, 116, 190, 208, 549, 785, 941, 1050
SfaNI	GCATC	1 cut(s)	342
SfuI	TTCGAA	1 cut(s)	870
SmaI	CCCGGG	1 cut(s)	628
SmiMI	CAYNNNNRTG	2 cut(s)	99, 661
SmlI	CTYRAG	2 cut(s)	181, 328
SmoI	CTYRAG	2 cut(s)	181, 328
SpeI	ACTAGT	1 cut(s)	1040
Sse9I	AATT	5 cut(s)	175, 737, 758, 787, 826
SsiI	CCGC	4 cut(s)	447, 611, 614, 804
SspMI	CTAG	3 cut(s)	468, 566, 1041
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	3 cut(s)	289, 625, 626
StyI	CCWWGG	4 cut(s)	100, 253, 1004, 1056
TaaI	ACNGT	3 cut(s)	704, 906, 925
TaiI	ACGT	1 cut(s)	1050
TaqI	TCGA	8 cut(s)	160, 237, 504, 602, 677, 707, 795, 870
TasI	AATT	5 cut(s)	175, 737, 758, 787, 826
TatI	WGTACW	2 cut(s)	920, 925
TauI	GCSGC	1 cut(s)	616
TfiI	GAWTC	5 cut(s)	226, 316, 587, 607, 807
Tru1I	TTAA	2 cut(s)	194, 549
Tru9I	TTAA	2 cut(s)	194, 549
TseFI	GTSAC	2 cut(s)	267, 1043
TseI	GCWGC	2 cut(s)	105, 743
Tsp45I	GTSAC	2 cut(s)	267, 1043
TspDTI	ATGAA	2 cut(s)	233, 901
TspMI	CCCGGG	1 cut(s)	626
XapI	RAATTY	3 cut(s)	758, 787, 826
XmaI	CCCGGG	1 cut(s)	626
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	3 cut(s)	468, 566, 1041
ZrmI	AGTACT	1 cut(s)	922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.