Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4391671 .. 4392393

Gene Structure 723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G12890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTTGAAATCAAGTAACAAGAGAAAAAGCAAAGAAGAGAAGAAGTTACAAGAAGGGAAGTACCTTGGAGTGAGGAGACGTCCATGGGGAAGATATGCAGCTGAAATCAGAAACCCTTTTACTAAAGAAAGACATTGGCTTGGAACGTTTGATACAGCCGAAGAAGCTGCTTTTGCATATGACGTTGCTGCTCGATCCATCAGCGGCTCTCTAGCTACAACAAACTTCTTCTACACTGAAAACACCTCTTTAGAAAGACATCCACAACAGTCTTTGGAGCCTCATATGACTTGGGGATCTTCTAGTCTCTGTCTTCTTCAAGATCAGCCTTTTGAAAACAACCATTTTGTTGCTGATCCTATCTCTTCTTCTTTTTCTCAAAAACAAGAGTCTTCTACCAATCTCACTAACACTTTCTCACATTGTTATAATGATGGTGATCATGTTGGCCAAAGCAAAGAGATTTCTTTACCTAATGATATGTCAAACAGTTTATTCGGTCATCAGGACAAAGTCGGTGAACATGACAATGCAGACCATATGAAGTTTGGCTCAGTTCTCAGCGACGAACCTCTCTGCTTTGAGTATGACTACATTGGGAATTATCTTCAGAGTTTTCTCAAAGATGTCAACGACGATGCTCCACAGTTTCTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

219

Amino Acids

25.01

Weight (kDa)

5.45

Isoelectric Point (pI)

55.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	20 - 69	5.9e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	429
AatII	GACGTC	1 cut(s)	82
AciI	CCGC	1 cut(s)	204
AclI	AACGTT	1 cut(s)	146
AclWI	GGATC	3 cut(s)	189, 304, 350
AcoI	YGGCCR	1 cut(s)	448
AcuI	CTGAAG	1 cut(s)	593
AcyI	GRCGYC	1 cut(s)	79
AfaI	GTAC	1 cut(s)	62
AgsI	TTSAA	3 cut(s)	7, 320, 335
AluBI	AGCT	3 cut(s)	101, 167, 215
AluI	AGCT	3 cut(s)	101, 167, 215
Alw26I	GTCTC	2 cut(s)	70, 311
AlwI	GGATC	3 cut(s)	189, 304, 350
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	3 cut(s)	98, 167, 188
AsuHPI	GGTGA	2 cut(s)	449, 530
BalI	TGGCCA	1 cut(s)	450
BbsI	GAAGAC	2 cut(s)	305, 384
BbvI	GCAGC	3 cut(s)	110, 154, 175
BccI	CCATC	2 cut(s)	206, 428
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BclI	TGATCA	1 cut(s)	439
BcoDI	GTCTC	2 cut(s)	70, 311
BfaI	CTAG	2 cut(s)	212, 303
BisI	GCNGC	4 cut(s)	99, 168, 189, 205
BlsI	GCNGC	4 cut(s)	100, 169, 190, 206
BmiI	GGNNCC	1 cut(s)	279
BmsI	GCATC	1 cut(s)	628
BpiI	GAAGAC	2 cut(s)	305, 384
BsaBI	GATNNNNATC	1 cut(s)	438
BsaHI	GRCGYC	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	64, 83
Bse8I	GATNNNNATC	1 cut(s)	438
BseDI	CCNNGG	2 cut(s)	64, 83
BseGI	GGATG	1 cut(s)	259
BseJI	GATNNNNATC	1 cut(s)	438
BseMII	CTCAG	2 cut(s)	567, 574
BseRI	GAGGAG	1 cut(s)	88
BseXI	GCAGC	3 cut(s)	110, 154, 175
BshFI	GGCC	1 cut(s)	450
BsmAI	GTCTC	2 cut(s)	70, 311
BsmBI	CGTCTC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	450
Bsp143I	GATC	5 cut(s)	194, 296, 322, 355, 439
Bsp19I	CCATGG	1 cut(s)	83
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	1 cut(s)	450
BspCNI	CTCAG	2 cut(s)	566, 573
BspLI	GGNNCC	1 cut(s)	279
BspPI	GGATC	3 cut(s)	189, 304, 350
BssECI	CCNNGG	2 cut(s)	64, 83
BssMI	GATC	5 cut(s)	194, 296, 322, 355, 439
BssNI	GRCGYC	1 cut(s)	79
BssT1I	CCWWGG	2 cut(s)	64, 83
Bst4CI	ACNGT	3 cut(s)	270, 491, 648
Bst6I	CTCTTC	2 cut(s)	30, 370
BstACI	GRCGYC	1 cut(s)	79
BstDEI	CTNAG	2 cut(s)	553, 560
BstDSI	CCRYGG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	5 cut(s)	197, 299, 325, 358, 442
BstMAI	GTCTC	2 cut(s)	70, 311
BstMBI	GATC	5 cut(s)	194, 296, 322, 355, 439
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 173
BstV1I	GCAGC	3 cut(s)	110, 154, 175
BstV2I	GAAGAC	2 cut(s)	305, 384
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
BsuRI	GGCC	1 cut(s)	450
BtgI	CCRYGG	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	3 cut(s)	84, 443, 524
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	2 cut(s)	553, 560
DpnI	GATC	5 cut(s)	196, 298, 324, 357, 441
DpnII	GATC	5 cut(s)	194, 296, 322, 355, 439
EaeI	YGGCCR	1 cut(s)	448
Eam1104I	CTCTTC	2 cut(s)	30, 370
EarI	CTCTTC	2 cut(s)	30, 370
Eco130I	CCWWGG	2 cut(s)	64, 83
Eco57I	CTGAAG	1 cut(s)	593
EcoT14I	CCWWGG	2 cut(s)	64, 83
ErhI	CCWWGG	2 cut(s)	64, 83
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	3 cut(s)	87, 446, 527
FatI	CATG	3 cut(s)	83, 442, 523
FauNDI	CATATG	3 cut(s)	178, 285, 540
FbaI	TGATCA	1 cut(s)	439
Fnu4HI	GCNGC	4 cut(s)	99, 168, 189, 205
FokI	GGATG	1 cut(s)	246
Fsp4HI	GCNGC	4 cut(s)	99, 168, 189, 205
FspBI	CTAG	2 cut(s)	212, 303
GluI	GCNGC	4 cut(s)	99, 168, 189, 205
HaeIII	GGCC	1 cut(s)	450
Hin1I	GRCGYC	1 cut(s)	79
Hin1II	CATG	3 cut(s)	87, 446, 527
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HinfI	GANTC	1 cut(s)	389
HphI	GGTGA	2 cut(s)	449, 530
Hpy166II	GTNNAC	2 cut(s)	521, 631
Hpy188I	TCNGA	2 cut(s)	110, 612
Hpy188III	TCNNGA	2 cut(s)	320, 506
Hpy8I	GTNNAC	2 cut(s)	521, 631
Hpy99I	CGWCG	2 cut(s)	569, 638
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	3 cut(s)	270, 491, 648
HpyCH4IV	ACGT	3 cut(s)	79, 146, 183
HpyCH4V	TGCA	3 cut(s)	98, 176, 533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 173
HpyF3I	CTNAG	2 cut(s)	553, 560
HpySE526I	ACGT	3 cut(s)	79, 146, 183
Hsp92I	GRCGYC	1 cut(s)	79
Hsp92II	CATG	3 cut(s)	87, 446, 527
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	5 cut(s)	194, 296, 322, 355, 439
LmnI	GCTCC	2 cut(s)	277, 646
LpnPI	CCDG	1 cut(s)	491
Lsp1109I	GCAGC	3 cut(s)	110, 154, 175
LweI	GCATC	1 cut(s)	628
MaeI	CTAG	2 cut(s)	212, 303
MaeII	ACGT	3 cut(s)	79, 146, 183
MaeIII	GTNAC	2 cut(s)	14, 45
MalI	GATC	5 cut(s)	196, 298, 324, 357, 441
MboI	GATC	5 cut(s)	194, 296, 322, 355, 439
MflI	RGATCY	1 cut(s)	296
MlsI	TGGCCA	1 cut(s)	450
MluCI	AATT	1 cut(s)	601
MluNI	TGGCCA	1 cut(s)	450
MlyI	GAGTC	1 cut(s)	398
MnlI	CCTC	4 cut(s)	66, 256, 291, 582
Mox20I	TGGCCA	1 cut(s)	450
MscI	TGGCCA	1 cut(s)	450
MslI	CAYNNNNRTG	1 cut(s)	528
Msp20I	TGGCCA	1 cut(s)	450
MspA1I	CMGCKG	2 cut(s)	101, 204
MwoI	GCNNNNNNNGC	2 cut(s)	164, 173
NcoI	CCATGG	1 cut(s)	83
NdeI	CATATG	3 cut(s)	178, 285, 540
NdeII	GATC	5 cut(s)	194, 296, 322, 355, 439
NlaIII	CATG	3 cut(s)	87, 446, 527
NlaIV	GGNNCC	1 cut(s)	279
PflFI	GACNNNGTC	1 cut(s)	512
PkrI	GCNGC	4 cut(s)	100, 169, 190, 206
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PsiI	TTATAA	1 cut(s)	429
Psp1406I	AACGTT	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	279
PsrI	GAACNNNNNNTAC	2 cut(s)	136, 168
PsuI	RGATCY	1 cut(s)	296
PsyI	GACNNNGTC	1 cut(s)	512
PvuII	CAGCTG	1 cut(s)	101
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	528
SatI	GCNGC	4 cut(s)	99, 168, 189, 205
Sau3AI	GATC	5 cut(s)	194, 296, 322, 355, 439
SchI	GAGTC	1 cut(s)	398
SfaNI	GCATC	1 cut(s)	628
SmiMI	CAYNNNNRTG	1 cut(s)	528
Sse9I	AATT	1 cut(s)	601
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	2 cut(s)	212, 303
StyI	CCWWGG	2 cut(s)	64, 83
TaaI	ACNGT	3 cut(s)	270, 491, 648
TaiI	ACGT	3 cut(s)	82, 149, 186
TaqI	TCGA	1 cut(s)	193
TaqII	GACCGA	1 cut(s)	488
TasI	AATT	1 cut(s)	601
TauI	GCSGC	1 cut(s)	207
TscAI	CASTG	1 cut(s)	241
TseI	GCWGC	3 cut(s)	98, 167, 188
TspDTI	ATGAA	1 cut(s)	557
TspRI	CASTG	1 cut(s)	241
Tth111I	GACNNNGTC	1 cut(s)	512
XcmI	CCANNNNNNNNNTGG	1 cut(s)	545
XspI	CTAG	2 cut(s)	212, 303
ZraI	GACGTC	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.