AT1G15080

Lipid phosphate phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
N/A
Physical Location & Seq
Forward (+)
5187549 .. 5189673
2125 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15080.1

Sequence Viewer

Length: 873 bp
ATGCCTGAAATTCATTTGGGTGCTCATACAATAAGATCCCATGGAGTAACAGTCGCGAGGTTCCACATGCATGACTGGCTCATTCTTCTGCTGCTAATAGTCATTGAAATTGTTCTTAATGTCATCGAACCCTTTCATCGTTTTGTTGGAGAAGATATGCTCACTGATCTCAGATACCCTCTGCAGGACAACACAATTCCTTTCTGGGCTGTCCCGTTGATAGCTGTTGTGCTACCTTTTGCTGTCATTTGTGTTTACTACTTCATTAGAAATGATGTTTATGACCTGCATCATGCAATACTAGGGCTTTTGTTCTCTGTACTTATAACCGGTGTCATAACCGATGCTATAAAGGACGCTGTTGGTCGACCTCGTCCTGATTTCTTTTGGCGTTGTTTCCCTGACGGTATAGGGATCTTTCACAATGTCACGAAGAATGTTCTATGTACTGGAGCTAAGGATGTGGTCAAAGAGGGACACAAGAGCTTCCCCAGCGGCCACACATCTTGGTCGTTTGCTGGTCTAGGATTTCTATCGTTATACTTGTCTGGGAAAATCAGGGTGTTTGACCAGAGAGGGCATGTTGCAAAGCTCTGCATTGTGATTTTACCTCTACTGGTTGCAGCATTGGTTGGTGTATCCAGAGTTGATGACTATTGGCATCACTGGCAAGATGTTTTTGGAGGAGCTATCATAGGATTGACTGTGGCCACATTTTGTTATCTGCAATTTTTCCCTCCTCCATACGATCCAGACGGTTGGGGACCTCATGCCTACTTCCAGATGCTGGCAGACTCAAGAAATGATGTCCAAGATTCAGCAGGAATGAATCATCTAAGCGTGAGGCAAACAGAGCTAGAGAGCGTACGTTGA

Protein Analysis

290

Amino Acids

32.7

Weight (kDa)

6.21

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 100 - 245 1.2e-30 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 326
Acc36I ACCTGC 1 cut(s) 294
AccB7I CCANNNNNTGG 1 cut(s) 787
AccI GTMKAC 1 cut(s) 367
AccII CGCG 1 cut(s) 56
AciI CCGC 1 cut(s) 495
AclWI GGATC 3 cut(s) 30, 422, 743
AcoI YGGCCR 2 cut(s) 496, 708
AcsI RAATTY 1 cut(s) 9
AfaI GTAC 3 cut(s) 321, 448, 867
AfiI CCNNNNNNNGG 2 cut(s) 184, 787
AgeI ACCGGT 1 cut(s) 329
AgsI TTSAA 1 cut(s) 107
AluBI AGCT 6 cut(s) 224, 455, 486, 592, 689, 856
AluI AGCT 6 cut(s) 224, 455, 486, 592, 689, 856
Alw21I GWGCWC 1 cut(s) 25
AlwI GGATC 3 cut(s) 30, 422, 743
AlwNI CAGNNNCTG 1 cut(s) 787
AoxI GGCC 2 cut(s) 496, 708
ApeKI GCWGC 2 cut(s) 91, 623
ApoI RAATTY 1 cut(s) 9
AsiGI ACCGGT 1 cut(s) 329
Asp700I GAANNNNTTC 2 cut(s) 111, 132
AspS9I GGNCC 1 cut(s) 764
AvaII GGWCC 1 cut(s) 764
BalI TGGCCA 1 cut(s) 710
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 2 cut(s) 78, 635
BciVI GTATCC 1 cut(s) 649
BfaI CTAG 3 cut(s) 302, 524, 857
BfmI CTRYAG 1 cut(s) 182
BfuAI ACCTGC 1 cut(s) 294
BfuI GTATCC 1 cut(s) 649
BisI GCNGC 3 cut(s) 92, 496, 624
BlsI GCNGC 3 cut(s) 93, 497, 625
Bme18I GGWCC 1 cut(s) 764
BmgT120I GGNCC 1 cut(s) 764
BmiI GGNNCC 2 cut(s) 62, 765
BmsI GCATC 4 cut(s) 298, 334, 670, 774
BpmI CTGGAG 1 cut(s) 471
Bpu10I CCTNAGC 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 781
BsaBI GATNNNNATC 1 cut(s) 532
BsaJI CCNNGG 1 cut(s) 40
BsaWI WCCGGW 1 cut(s) 329
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 787
Bse118I RCCGGY 1 cut(s) 329
Bse1I ACTGG 4 cut(s) 80, 454, 621, 671
Bse8I GATNNNNATC 1 cut(s) 532
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 1 cut(s) 466
BseJI GATNNNNATC 1 cut(s) 532
BseLI CCNNNNNNNGG 2 cut(s) 184, 787
BseMII CTCAG 1 cut(s) 184
BseNI ACTGG 4 cut(s) 80, 454, 621, 671
BseRI GAGGAG 2 cut(s) 699, 729
BseXI GCAGC 2 cut(s) 78, 635
BseYI CCCAGC 1 cut(s) 491
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 2 cut(s) 498, 710
BshTI ACCGGT 1 cut(s) 329
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 1 cut(s) 330
BsiWI CGTACG 1 cut(s) 865
BslFI GGGAC 3 cut(s) 197, 489, 777
BslI CCNNNNNNNGG 2 cut(s) 184, 787
BsmFI GGGAC 3 cut(s) 197, 489, 777
BsnI GGCC 2 cut(s) 498, 710
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 4 cut(s) 35, 166, 414, 748
Bsp19I CCATGG 1 cut(s) 40
Bsp68I TCGCGA 1 cut(s) 56
BspACI CCGC 1 cut(s) 495
BspANI GGCC 2 cut(s) 498, 710
BspCNI CTCAG 1 cut(s) 183
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 2 cut(s) 62, 765
BspMAI CTGCAG 1 cut(s) 186
BspMI ACCTGC 1 cut(s) 294
BspPI GGATC 3 cut(s) 30, 422, 743
BsrFI RCCGGY 1 cut(s) 329
BsrI ACTGG 4 cut(s) 80, 454, 621, 671
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 4 cut(s) 35, 166, 414, 748
BssT1I CCWWGG 1 cut(s) 40
Bst4CI ACNGT 4 cut(s) 52, 407, 706, 758
BstC8I GCNNGC 1 cut(s) 789
BstDEI CTNAG 3 cut(s) 170, 456, 836
BstDSI CCRYGG 1 cut(s) 40
BstF5I GGATG 1 cut(s) 466
BstFNI CGCG 1 cut(s) 56
BstKTI GATC 4 cut(s) 38, 169, 417, 751
BstMBI GATC 4 cut(s) 35, 166, 414, 748
BstMWI GCNNNNNNNGC 4 cut(s) 76, 492, 667, 853
BstNSI RCATGY 2 cut(s) 70, 584
BstSFI CTRYAG 1 cut(s) 182
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 2 cut(s) 78, 635
BstX2I RGATCY 2 cut(s) 35, 414
BstXI CCANNNNNNTGG 1 cut(s) 759
BstYI RGATCY 2 cut(s) 35, 414
BsuI GTATCC 1 cut(s) 649
BsuRI GGCC 2 cut(s) 498, 710
BtgI CCRYGG 1 cut(s) 40
BtsCI GGATG 1 cut(s) 466
BtsIMutI CAGTG 2 cut(s) 162, 664
BtuMI TCGCGA 1 cut(s) 56
BveI ACCTGC 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 789
CaiI CAGNNNCTG 1 cut(s) 787
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 764
CseI GACGC 1 cut(s) 365
Csp6I GTAC 3 cut(s) 320, 447, 866
CspAI ACCGGT 1 cut(s) 329
CspCI CAANNNNNGTGG 2 cut(s) 488, 523
CviAII CATG 6 cut(s) 41, 67, 71, 293, 581, 770
CviQI GTAC 3 cut(s) 320, 447, 866
DdeI CTNAG 3 cut(s) 170, 456, 836
DpnI GATC 4 cut(s) 37, 168, 416, 750
DpnII GATC 4 cut(s) 35, 166, 414, 748
EaeI YGGCCR 2 cut(s) 496, 708
Eco130I CCWWGG 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 764
EcoO109I RGGNCCY 1 cut(s) 764
EcoT14I CCWWGG 1 cut(s) 40
EcoT22I ATGCAT 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 6 cut(s) 44, 70, 74, 296, 584, 773
FaqI GGGAC 3 cut(s) 197, 489, 777
FatI CATG 6 cut(s) 40, 66, 70, 292, 580, 769
FblI GTMKAC 1 cut(s) 367
Fnu4HI GCNGC 3 cut(s) 92, 496, 624
FokI GGATG 1 cut(s) 473
Fsp4HI GCNGC 3 cut(s) 92, 496, 624
FspBI CTAG 3 cut(s) 302, 524, 857
GluI GCNGC 3 cut(s) 92, 496, 624
GsaI CCCAGC 1 cut(s) 495
GsuI CTGGAG 1 cut(s) 471
HaeIII GGCC 2 cut(s) 498, 710
HapII CCGG 1 cut(s) 330
HgaI GACGC 1 cut(s) 365
Hin1II CATG 6 cut(s) 44, 70, 74, 296, 584, 773
HincII GTYRAC 1 cut(s) 368
HindII GTYRAC 1 cut(s) 368
HinfI GANTC 3 cut(s) 794, 815, 829
HpaII CCGG 1 cut(s) 330
Hpy166II GTNNAC 2 cut(s) 256, 368
Hpy188I TCNGA 1 cut(s) 173
Hpy188III TCNNGA 7 cut(s) 55, 377, 430, 642, 752, 781, 798
Hpy8I GTNNAC 2 cut(s) 256, 368
HpyCH4III ACNGT 4 cut(s) 52, 407, 706, 758
HpyCH4IV ACGT 1 cut(s) 868
HpyCH4V TGCA 8 cut(s) 70, 184, 289, 296, 587, 597, 623, 727
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 492, 667, 853
HpyF3I CTNAG 3 cut(s) 170, 456, 836
HpySE526I ACGT 1 cut(s) 868
Hsp92II CATG 6 cut(s) 44, 70, 74, 296, 584, 773
Kzo9I GATC 4 cut(s) 35, 166, 414, 748
LmnI GCTCC 2 cut(s) 452, 686
Lsp1109I GCAGC 2 cut(s) 78, 635
LweI GCATC 4 cut(s) 298, 334, 670, 774
MaeI CTAG 3 cut(s) 302, 524, 857
MaeII ACGT 1 cut(s) 868
MaeIII GTNAC 2 cut(s) 46, 427
MalI GATC 4 cut(s) 37, 168, 416, 750
MboI GATC 4 cut(s) 35, 166, 414, 748
MboII GAAGA 3 cut(s) 77, 164, 445
MflI RGATCY 2 cut(s) 35, 414
MhlI GDGCHC 1 cut(s) 25
MlsI TGGCCA 1 cut(s) 710
MluCI AATT 4 cut(s) 9, 108, 195, 728
MluNI TGGCCA 1 cut(s) 710
MlyI GAGTC 1 cut(s) 788
MmeI TCCRAC 1 cut(s) 127
Mox20I TGGCCA 1 cut(s) 710
Mph1103I ATGCAT 1 cut(s) 72
MroXI GAANNNNTTC 2 cut(s) 111, 132
MscI TGGCCA 1 cut(s) 710
MseI TTAA 1 cut(s) 117
MslI CAYNNNNRTG 2 cut(s) 18, 69
Msp20I TGGCCA 1 cut(s) 710
MspA1I CMGCKG 1 cut(s) 495
MspI CCGG 1 cut(s) 330
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 4 cut(s) 76, 492, 667, 853
NcoI CCATGG 1 cut(s) 40
NdeII GATC 4 cut(s) 35, 166, 414, 748
NlaIII CATG 6 cut(s) 44, 70, 74, 296, 584, 773
NlaIV GGNNCC 2 cut(s) 62, 765
NmuCI GTSAC 1 cut(s) 427
NruI TCGCGA 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 72
NspI RCATGY 2 cut(s) 70, 584
PdmI GAANNNNTTC 2 cut(s) 111, 132
PfeI GAWTC 2 cut(s) 815, 829
Pfl23II CGTACG 1 cut(s) 865
PflFI GACNNNGTC 1 cut(s) 372
PflMI CCANNNNNTGG 1 cut(s) 787
PinAI ACCGGT 1 cut(s) 329
PkrI GCNGC 3 cut(s) 93, 497, 625
PleI GAGTC 1 cut(s) 788
PpsI GAGTC 1 cut(s) 788
PpuMI RGGWCCY 1 cut(s) 764
PsiI TTATAA 1 cut(s) 326
Psp5II RGGWCCY 1 cut(s) 764
PspFI CCCAGC 1 cut(s) 491
PspLI CGTACG 1 cut(s) 865
PspN4I GGNNCC 2 cut(s) 62, 765
PspPI GGNCC 1 cut(s) 764
PspPPI RGGWCCY 1 cut(s) 764
PstI CTGCAG 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 787
PsuI RGATCY 2 cut(s) 35, 414
PsyI GACNNNGTC 1 cut(s) 372
RruI TCGCGA 1 cut(s) 56
RsaI GTAC 3 cut(s) 321, 448, 867
RsaNI GTAC 3 cut(s) 320, 447, 866
RseI CAYNNNNRTG 2 cut(s) 18, 69
SalI GTCGAC 1 cut(s) 366
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 3 cut(s) 92, 496, 624
Sau3AI GATC 4 cut(s) 35, 166, 414, 748
Sau96I GGNCC 1 cut(s) 764
SchI GAGTC 1 cut(s) 788
SduI GDGCHC 1 cut(s) 25
SfaNI GCATC 4 cut(s) 298, 334, 670, 774
SfcI CTRYAG 1 cut(s) 182
SinI GGWCC 1 cut(s) 764
SmiMI CAYNNNNRTG 2 cut(s) 18, 69
SmlI CTYRAG 1 cut(s) 796
SmoI CTYRAG 1 cut(s) 796
Sse9I AATT 4 cut(s) 9, 108, 195, 728
SsiI CCGC 1 cut(s) 495
SspMI CTAG 3 cut(s) 302, 524, 857
StyI CCWWGG 1 cut(s) 40
TaaI ACNGT 4 cut(s) 52, 407, 706, 758
TaiI ACGT 1 cut(s) 871
TaqI TCGA 2 cut(s) 126, 367
TasI AATT 4 cut(s) 9, 108, 195, 728
TatI WGTACW 2 cut(s) 319, 446
TauI GCSGC 1 cut(s) 498
TfiI GAWTC 2 cut(s) 815, 829
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 2 cut(s) 169, 671
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 2 cut(s) 91, 623
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 3 cut(s) 125, 253, 842
TspRI CASTG 2 cut(s) 169, 671
Tth111I GACNNNGTC 1 cut(s) 372
Van91I CCANNNNNTGG 1 cut(s) 787
VpaK11BI GGWCC 1 cut(s) 764
XapI RAATTY 1 cut(s) 9
XceI RCATGY 2 cut(s) 70, 584
XmiI GTMKAC 1 cut(s) 367
XmnI GAANNNNTTC 2 cut(s) 111, 132
XspI CTAG 3 cut(s) 302, 524, 857
Zsp2I ATGCAT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.