AT1G16440

intracellular signal transduction

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
N/A
Physical Location & Seq
Forward (+)
5615808 .. 5617672
1865 bp
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UTR
Exon/CDS
Intron
AT1G16440.1

Sequence Viewer

Length: 1500 bp
ATGTTATTGAAACCCGGAAATAAGCTTGTCTCGCCGGAGACGAGTCATCATCGTGACTCTGCCTCAAACTCATCAAACCATAAATGTCAACAACAAAAACCGCGTAAAGATAAGCAGAAGCAAGTTGAGCAAAACACAAAGAAGATTGAAGAACATCAAATAAAATCAGAGTCGACTCTGTTAATCAGCAATCACAACGTTAACATGAGCTCCCAAAGCAACAACAGCGAAAGCACATCCACTAATAATTCCTCTAAGCCTCACACGGGAGGAGATATTAGGTGGGACGCAGTGAATTCCTTGAAATCTAGAGGAATCAAGCTTGGAATCAGCGATTTTCGTGTTTTGAAACGGCTAGGCTACGGAGATATCGGTAGTGTTTATCTTGTTGAACTCAAAGGGGCAAATCCCACGACGTATTTCGCGATGAAAGTGATGGACAAGGCTTCTCTTGTGAGCAGGAACAAGCTGTTGAGAGCTCAGACTGAAAGAGAGATCTTGTCTCAGCTTGATCATCCTTTCTTGCCTACTCTTTACTCTCACTTCGAAACTGATAAATTCTATTGCTTGGTGATGGAGTTTTGTAGTGGTGGAAATCTCTATTCCTTGAGACAGAAGCAACCCAACAAGTGTTTCACAGAAGACGCTGCAAGGTTCTTTGCATCAGAAGTGTTATTAGCATTAGAGTACTTACATATGCTCGGAATCGTATACCGAGATTTAAAGCCAGAGAACGTTCTGGTTCGAGACGACGGTCACATTATGCTCTCCGATTTCGATTTATCCCTCCGATGTTCAGTCAACCCAACACTTGTCAAATCTTTCAACGGCGGTGGAACCACCGGAATCATTGACGACAATGCGGCGGTACAAGGATGTTACCAACCATCCGCATTCTTCCCACGAATGCTCCAATCCTCGAAGAAAAACCGTAAATCCAAATCCGATTTCGATGGATCGTTACCAGAACTCATGGCAGAGCCGACAAACGTGAAATCAATGTCTTTTGTCGGAACACACGAGTATTTAGCGCCGGAGATTATCAAAAACGAAGGTCACGGAAGCGCCGTCGATTGGTGGACGTTCGGGATATTCATCTACGAGCTTCTTCATGGAGCAACACCATTTAAAGGACAAGGAAACAAAGCCACGCTTTATAATGTAATCGGACAACCTCTTAGATTCCCGGAATATTCTCAGGTTAGCTCGACGGCGAAGGATTTGATCAAAGGTTTATTGGTAAAAGAGCCGCAAAACAGAATTGCGTATAAGCGAGGCGCGACGGAGATCAAGCAACATCCATTTTTTGAAGGTGTGAATTGGGCGTTGATTCGTGGAGAAACACCGCCACATTTGCCGGAGCCGGTGGATTTCTCGTGTTATGTGAAGAAGGAGAAGGAGTCTTTGCCGCCGGCGGCAACGGAAAAGAAGAGCAAGATGTTTGATGAAGCTAATAAGAGCGGTAGTGATCCTGATTACATTGTTTTTGAATATTTTTAG

Protein Analysis

499

Amino Acids

56.13

Weight (kDa)

8.68

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 113 - 268 1.5e-34 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 115 - 265 7.1e-20 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 332 - 436 3.1e-23 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 333 - 424 1.7e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1158
AccBSI CCGCTC 1 cut(s) 1461
AccI GTMKAC 2 cut(s) 173, 711
AccII CGCG 3 cut(s) 103, 425, 1280
AclI AACGTT 2 cut(s) 198, 735
AclWI GGATC 2 cut(s) 964, 1463
AcsI RAATTY 2 cut(s) 295, 557
AfaI GTAC 2 cut(s) 689, 870
AfiI CCNNNNNNNGG 3 cut(s) 266, 1074, 1130
AgsI TTSAA 8 cut(s) 10, 149, 304, 349, 392, 826, 1310, 1490
AjuI GAANNNNNNNTTGG 4 cut(s) 617, 649, 932, 964
AluBI AGCT 9 cut(s) 25, 210, 322, 469, 479, 508, 1105, 1206, 1451
AluI AGCT 9 cut(s) 25, 210, 322, 469, 479, 508, 1105, 1206, 1451
Alw21I GWGCWC 2 cut(s) 212, 481
Alw26I GTCTC 5 cut(s) 32, 34, 507, 604, 741
AlwI GGATC 2 cut(s) 964, 1463
ApeKI GCWGC 1 cut(s) 647
ApoI RAATTY 2 cut(s) 295, 557
AspLEI GCGC 3 cut(s) 1033, 1067, 1280
AsuC2I CCSGG 2 cut(s) 15, 1187
AsuHPI GGTGA 1 cut(s) 583
AsuII TTCGAA 1 cut(s) 546
BanII GRGCYC 2 cut(s) 212, 481
BauI CACGAG 2 cut(s) 1019, 1375
BbsI GAAGAC 1 cut(s) 648
Bbv12I GWGCWC 2 cut(s) 212, 481
BbvI GCAGC 1 cut(s) 634
BccI CCATC 4 cut(s) 430, 568, 895, 947
BceAI ACGGC 4 cut(s) 368, 844, 1052, 1227
BclI TGATCA 2 cut(s) 511, 1224
BcnI CCSGG 2 cut(s) 15, 1187
BcoDI GTCTC 5 cut(s) 32, 34, 507, 604, 741
BfaI CTAG 2 cut(s) 309, 356
BfoI RGCGCY 2 cut(s) 1034, 1068
BglII AGATCT 1 cut(s) 495
BisI GCNGC 5 cut(s) 648, 864, 1250, 1409, 1416
BlsI GCNGC 5 cut(s) 649, 865, 1251, 1410, 1417
BmcAI AGTACT 1 cut(s) 689
Bme1390I CCNGG 2 cut(s) 15, 1187
BmiI GGNNCC 2 cut(s) 838, 1362
BmrFI CCNGG 2 cut(s) 15, 1187
BmsI GCATC 1 cut(s) 671
BoxI GACNNNNGTC 1 cut(s) 753
BpiI GAAGAC 1 cut(s) 648
Bpu14I TTCGAA 1 cut(s) 546
BpuEI CTTGAG 1 cut(s) 628
BpuMI CCSGG 2 cut(s) 15, 1187
BsaBI GATNNNNATC 1 cut(s) 1094
BsaWI WCCGGW 1 cut(s) 842
BsaXI ACNNNNNCTCC 6 cut(s) 194, 224, 894, 924, 1385, 1415
Bsc4I CCNNNNNNNGG 3 cut(s) 266, 1074, 1130
Bse118I RCCGGY 2 cut(s) 1363, 1411
Bse8I GATNNNNATC 1 cut(s) 1094
BseGI GGATG 5 cut(s) 236, 514, 881, 887, 1297
BseJI GATNNNNATC 1 cut(s) 1094
BseLI CCNNNNNNNGG 3 cut(s) 266, 1074, 1130
BseMII CTCAG 3 cut(s) 494, 518, 1211
BseRI GAGGAG 1 cut(s) 285
BseXI GCAGC 1 cut(s) 634
Bsh1236I CGCG 3 cut(s) 103, 425, 1280
BsiHKAI GWGCWC 2 cut(s) 212, 481
BsiSI CCGG 8 cut(s) 15, 35, 843, 1034, 1187, 1358, 1364, 1412
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 3 cut(s) 266, 1074, 1130
BsmAI GTCTC 5 cut(s) 32, 34, 507, 604, 741
BsmBI CGTCTC 2 cut(s) 32, 741
BsmFI GGGAC 1 cut(s) 299
BsmI GAATGC 2 cut(s) 893, 912
Bsp119I TTCGAA 1 cut(s) 546
Bsp1286I GDGCHC 2 cut(s) 212, 481
Bsp143I GATC 6 cut(s) 495, 511, 956, 1224, 1287, 1468
Bsp68I TCGCGA 1 cut(s) 425
BspCNI CTCAG 3 cut(s) 493, 517, 1210
BspFNI CGCG 3 cut(s) 103, 425, 1280
BspLI GGNNCC 2 cut(s) 838, 1362
BspPI GGATC 2 cut(s) 964, 1463
BspQI GCTCTTC 1 cut(s) 1424
BspT104I TTCGAA 1 cut(s) 546
BsrBI CCGCTC 1 cut(s) 1461
BsrFI RCCGGY 2 cut(s) 1363, 1411
BssAI RCCGGY 2 cut(s) 1363, 1411
BssMI GATC 6 cut(s) 495, 511, 956, 1224, 1287, 1468
BssNAI GTATAC 1 cut(s) 712
BssSI CACGAG 2 cut(s) 1019, 1375
Bst1107I GTATAC 1 cut(s) 712
Bst2BI CACGAG 2 cut(s) 1019, 1375
Bst4CI ACNGT 2 cut(s) 755, 932
Bst6I CTCTTC 1 cut(s) 1424
BstBI TTCGAA 1 cut(s) 546
BstC8I GCNNGC 1 cut(s) 1413
BstDEI CTNAG 5 cut(s) 255, 480, 504, 1178, 1197
BstF5I GGATG 5 cut(s) 236, 514, 881, 887, 1297
BstFNI CGCG 3 cut(s) 103, 425, 1280
BstH2I RGCGCY 2 cut(s) 1034, 1068
BstHHI GCGC 3 cut(s) 1033, 1067, 1280
BstKTI GATC 6 cut(s) 498, 514, 959, 1227, 1290, 1471
BstMAI GTCTC 5 cut(s) 32, 34, 507, 604, 741
BstMBI GATC 6 cut(s) 495, 511, 956, 1224, 1287, 1468
BstMWI GCNNNNNNNGC 5 cut(s) 31, 127, 216, 225, 1354
BstPAI GACNNNNGTC 1 cut(s) 753
BstSCI CCNGG 2 cut(s) 13, 1185
BstUI CGCG 3 cut(s) 103, 425, 1280
BstV1I GCAGC 1 cut(s) 634
BstV2I GAAGAC 1 cut(s) 648
BstX2I RGATCY 1 cut(s) 495
BstYI RGATCY 1 cut(s) 495
BstZ17I GTATAC 1 cut(s) 712
BtgZI GCGATG 1 cut(s) 440
BtsCI GGATG 5 cut(s) 236, 514, 881, 887, 1297
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 297
BtuMI TCGCGA 1 cut(s) 425
Cac8I GCNNGC 1 cut(s) 1413
CfoI GCGC 3 cut(s) 1033, 1067, 1280
Cfr10I RCCGGY 2 cut(s) 1363, 1411
CseI GACGC 2 cut(s) 296, 653
Csp6I GTAC 2 cut(s) 688, 869
CspCI CAANNNNNGTGG 2 cut(s) 814, 849
CviAII CATG 3 cut(s) 205, 973, 1112
CviQI GTAC 2 cut(s) 688, 869
DdeI CTNAG 5 cut(s) 255, 480, 504, 1178, 1197
DpnI GATC 6 cut(s) 497, 513, 958, 1226, 1289, 1470
DpnII GATC 6 cut(s) 495, 511, 956, 1224, 1287, 1468
DraI TTTAAA 2 cut(s) 723, 1129
Eam1104I CTCTTC 1 cut(s) 1424
EarI CTCTTC 1 cut(s) 1424
Ecl136II GAGCTC 2 cut(s) 210, 479
Eco24I GRGCYC 2 cut(s) 212, 481
Eco32I GATATC 1 cut(s) 370
Eco53kI GAGCTC 2 cut(s) 210, 479
EcoICRI GAGCTC 2 cut(s) 210, 479
EcoRI GAATTC 1 cut(s) 295
EcoRV GATATC 1 cut(s) 370
EcoT38I GRGCYC 2 cut(s) 212, 481
Esp3I CGTCTC 2 cut(s) 32, 741
FaeI CATG 3 cut(s) 208, 976, 1115
FalI AAGNNNNNCTT 2 cut(s) 1137, 1169
FaqI GGGAC 1 cut(s) 299
FatI CATG 3 cut(s) 204, 972, 1111
FauNDI CATATG 1 cut(s) 696
FbaI TGATCA 2 cut(s) 511, 1224
FblI GTMKAC 2 cut(s) 173, 711
Fnu4HI GCNGC 5 cut(s) 648, 864, 1250, 1409, 1416
FokI GGATG 5 cut(s) 223, 501, 874, 888, 1284
FriOI GRGCYC 2 cut(s) 212, 481
Fsp4HI GCNGC 5 cut(s) 648, 864, 1250, 1409, 1416
FspBI CTAG 2 cut(s) 309, 356
GlaI GCGC 3 cut(s) 1032, 1066, 1279
GluI GCNGC 5 cut(s) 648, 864, 1250, 1409, 1416
HaeII RGCGCY 2 cut(s) 1034, 1068
HapII CCGG 8 cut(s) 15, 35, 843, 1034, 1187, 1358, 1364, 1412
HgaI GACGC 2 cut(s) 296, 653
HhaI GCGC 3 cut(s) 1033, 1067, 1280
Hin1II CATG 3 cut(s) 208, 976, 1115
Hin6I GCGC 3 cut(s) 1031, 1065, 1278
HinP1I GCGC 3 cut(s) 1031, 1065, 1278
HincII GTYRAC 4 cut(s) 89, 174, 202, 802
HindII GTYRAC 4 cut(s) 89, 174, 202, 802
HindIII AAGCTT 2 cut(s) 23, 320
HpaI GTTAAC 1 cut(s) 202
HpaII CCGG 8 cut(s) 15, 35, 843, 1034, 1187, 1358, 1364, 1412
HphI GGTGA 1 cut(s) 583
Hpy166II GTNNAC 6 cut(s) 89, 174, 202, 712, 802, 1080
Hpy188I TCNGA 9 cut(s) 169, 483, 667, 704, 772, 791, 946, 1013, 1169
Hpy188III TCNNGA 6 cut(s) 53, 309, 424, 746, 1087, 1472
Hpy8I GTNNAC 6 cut(s) 89, 174, 202, 712, 802, 1080
Hpy99I CGWCG 5 cut(s) 418, 755, 1073, 1213, 1285
HpyAV CCTTC 5 cut(s) 1046, 1210, 1304, 1384, 1390
HpyCH4III ACNGT 2 cut(s) 755, 932
HpyCH4IV ACGT 5 cut(s) 198, 416, 735, 990, 1082
HpyCH4V TGCA 2 cut(s) 650, 662
HpyF10VI GCNNNNNNNGC 5 cut(s) 31, 127, 216, 225, 1354
HpyF3I CTNAG 5 cut(s) 255, 480, 504, 1178, 1197
HpySE526I ACGT 5 cut(s) 198, 416, 735, 990, 1082
Hsp92II CATG 3 cut(s) 208, 976, 1115
HspAI GCGC 3 cut(s) 1031, 1065, 1278
KroI GCCGGC 1 cut(s) 1411
KroNI GCCGGC 1 cut(s) 1413
Ksp22I TGATCA 2 cut(s) 511, 1224
KspAI GTTAAC 1 cut(s) 202
Kzo9I GATC 6 cut(s) 495, 511, 956, 1224, 1287, 1468
LguI GCTCTTC 1 cut(s) 1424
LmnI GCTCC 4 cut(s) 215, 915, 1115, 1360
Lsp1109I GCAGC 1 cut(s) 634
LweI GCATC 1 cut(s) 671
MaeI CTAG 2 cut(s) 309, 356
MaeII ACGT 5 cut(s) 198, 416, 735, 990, 1082
MaeIII GTNAC 5 cut(s) 53, 755, 878, 960, 1055
MalI GATC 6 cut(s) 497, 513, 958, 1226, 1289, 1470
MbiI CCGCTC 1 cut(s) 1461
MboI GATC 6 cut(s) 495, 511, 956, 1224, 1287, 1468
MboII GAAGA 8 cut(s) 154, 161, 653, 889, 934, 1100, 1399, 1441
MflI RGATCY 1 cut(s) 495
MhlI GDGCHC 2 cut(s) 212, 481
MluCI AATT 5 cut(s) 247, 295, 557, 1260, 1318
MlyI GAGTC 5 cut(s) 50, 52, 169, 179, 1409
MmeI TCCRAC 1 cut(s) 991
MnlI CCTC 9 cut(s) 73, 262, 263, 270, 305, 797, 928, 1185, 1268
MreI CGCCGGCG 1 cut(s) 1411
MroNI GCCGGC 1 cut(s) 1411
MseI TTAA 4 cut(s) 182, 201, 722, 1128
MslI CAYNNNNRTG 1 cut(s) 51
MspI CCGG 8 cut(s) 15, 35, 843, 1034, 1187, 1358, 1364, 1412
MspR9I CCNGG 2 cut(s) 15, 1187
Mva1269I GAATGC 2 cut(s) 893, 912
MvnI CGCG 3 cut(s) 103, 425, 1280
MwoI GCNNNNNNNGC 5 cut(s) 31, 127, 216, 225, 1354
NaeI GCCGGC 1 cut(s) 1413
NciI CCSGG 2 cut(s) 15, 1187
NdeI CATATG 1 cut(s) 696
NdeII GATC 6 cut(s) 495, 511, 956, 1224, 1287, 1468
NgoMIV GCCGGC 1 cut(s) 1411
NlaIII CATG 3 cut(s) 208, 976, 1115
NlaIV GGNNCC 2 cut(s) 838, 1362
NmuCI GTSAC 3 cut(s) 53, 755, 1055
NruI TCGCGA 1 cut(s) 425
NspV TTCGAA 1 cut(s) 546
PciSI GCTCTTC 1 cut(s) 1424
PcsI WCGNNNNNNNCGW 4 cut(s) 38, 422, 1017, 1065
PctI GAATGC 2 cut(s) 893, 912
PdiI GCCGGC 1 cut(s) 1413
PfeI GAWTC 6 cut(s) 315, 327, 705, 846, 1182, 1330
PfoI TCCNGGA 1 cut(s) 1185
PkrI GCNGC 5 cut(s) 649, 865, 1251, 1410, 1417
PleI GAGTC 5 cut(s) 50, 51, 169, 178, 1408
PpsI GAGTC 5 cut(s) 50, 51, 169, 178, 1408
PshAI GACNNNNGTC 1 cut(s) 753
PsiI TTATAA 1 cut(s) 1158
Psp124BI GAGCTC 2 cut(s) 212, 481
Psp1406I AACGTT 2 cut(s) 198, 735
PspN4I GGNNCC 2 cut(s) 838, 1362
PsuI RGATCY 1 cut(s) 495
RruI TCGCGA 1 cut(s) 425
RsaI GTAC 2 cut(s) 689, 870
RsaNI GTAC 2 cut(s) 688, 869
RseI CAYNNNNRTG 1 cut(s) 51
SacI GAGCTC 2 cut(s) 212, 481
SalI GTCGAC 1 cut(s) 172
SapI GCTCTTC 1 cut(s) 1424
SaqAI TTAA 4 cut(s) 182, 201, 722, 1128
SatI GCNGC 5 cut(s) 648, 864, 1250, 1409, 1416
Sau3AI GATC 6 cut(s) 495, 511, 956, 1224, 1287, 1468
ScaI AGTACT 1 cut(s) 689
SchI GAGTC 5 cut(s) 50, 52, 169, 179, 1409
ScrFI CCNGG 2 cut(s) 15, 1187
SduI GDGCHC 2 cut(s) 212, 481
SfaNI GCATC 1 cut(s) 671
SfuI TTCGAA 1 cut(s) 546
SgrAI CRCCGGYG 1 cut(s) 1411
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 607
SmoI CTYRAG 1 cut(s) 607
Sse9I AATT 5 cut(s) 247, 295, 557, 1260, 1318
SspI AATATT 2 cut(s) 1193, 1493
SspMI CTAG 2 cut(s) 309, 356
SstI GAGCTC 2 cut(s) 212, 481
StyD4I CCNGG 2 cut(s) 13, 1185
TaaI ACNGT 2 cut(s) 755, 932
TaiI ACGT 5 cut(s) 201, 419, 738, 993, 1085
TaqI TCGA 8 cut(s) 173, 546, 745, 777, 920, 951, 1071, 1208
TasI AATT 5 cut(s) 247, 295, 557, 1260, 1318
TatI WGTACW 1 cut(s) 687
TauI GCSGC 4 cut(s) 866, 1252, 1411, 1418
TfiI GAWTC 6 cut(s) 315, 327, 705, 846, 1182, 1330
Tru1I TTAA 4 cut(s) 182, 201, 722, 1128
Tru9I TTAA 4 cut(s) 182, 201, 722, 1128
TscAI CASTG 1 cut(s) 297
TseFI GTSAC 3 cut(s) 53, 755, 1055
TseI GCWGC 1 cut(s) 647
Tsp45I GTSAC 3 cut(s) 53, 755, 1055
TspDTI ATGAA 4 cut(s) 443, 1084, 1100, 1461
TspGWI ACGGA 4 cut(s) 378, 1074, 1298, 1436
TspRI CASTG 1 cut(s) 297
XapI RAATTY 2 cut(s) 295, 557
XbaI TCTAGA 1 cut(s) 308
XmiI GTMKAC 2 cut(s) 173, 711
XspI CTAG 2 cut(s) 309, 356
ZrmI AGTACT 1 cut(s) 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.