AT1G18570
MYB Family

Transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
N/A
Physical Location & Seq
Forward (+)
6389399 .. 6391386
1988 bp
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UTR
Exon/CDS
Intron
AT1G18570.1

Sequence Viewer

Length: 1059 bp
ATGGTGCGGACACCGTGTTGCAAAGCTGAACTAGGGTTAAAGAAAGGAGCTTGGACTCCCGAGGAAGATCAGAAGCTTCTCTCTTACCTTAACCGCCACGGTGAAGGTGGATGGCGAACTCTCCCCGAAAAAGCTGGACTCAAGAGATGCGGCAAAAGCTGCAGACTGAGATGGGCCAATTATCTTAGACCTGACATCAAAAGAGGAGAGTTCACTGAAGACGAAGAACGTTCAATCATCTCTCTTCACGCCCTTCACGGCAACAAATGGTCTGCTATAGCTCGTGGACTACCAGGAAGAACCGATAACGAGATCAAGAACTACTGGAACACTCATATCAAAAAACGTTTGATCAAGAAAGGTATTGATCCAGTTACACACAAGGGCATAACCTCCGGTACCGACAAATCAGAAAACCTCCCGGAGAAACAAAATGTTAATCTGACAACTAGTGACCATGATCTTGATAATGACAAGGCGAAGAAGAACAACAAGAATTTTGGATTATCATCGGCTAGTTTCTTGAACAAAGTAGCTAATAGGTTCGGAAAGAGAATCAATCAGAGTGTTCTGTCTGAGATTATCGGAAGTGGAGGCCCACTTGCTTCTACTAGTCACACTACTAATACTACAACTACAAGTGTTTCCGTTGACTCTGAATCAGTTAAGTCAACGAGTTCTTCCTTCGCACCAACCTCGAATCTTCTCTGCCATGGGACCGTTGCAACAACACCAGTTTCATCGAACTTTGACGTTGATGGTAACGTTAATCTGACGTGTTCTTCGTCCACGTTCTCTGATTCCTCCGTTAACAATCCTCTAATGTACTGCGATAATTTCGTTGGTAATAACAACGTTGATGATGAGGATACTATCGGGTTCTCCACATTTCTGAATGATGAAGATTTCATGATGTTGGAGGAGTCTTGTGTTGAAAACACTGCGTTCATGAAAGAACTTACGAGGTTTCTTCACGAGGATGAAAACGACGTCGTTGATGTGACGCCGGTCTATGAACGTCAAGACTTGTTTGACGAAATTGATAACTATTTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000162 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0002213 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006082 GO:0006109 GO:0006355 GO:0006357 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009267 GO:0009308 GO:0009309 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009759 GO:0009819 GO:0009867 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010104 GO:0010105 GO:0010438 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010675 GO:0014070 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023051 GO:0023052 GO:0023057 GO:0030054 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0031930 GO:0032502 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042343 GO:0042401 GO:0042430 GO:0042435 GO:0042493 GO:0042545 GO:0042594 GO:0042742 GO:0042762 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043436 GO:0043455 GO:0043565 GO:0044106 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0045087 GO:0045229 GO:0045893 GO:0045935 GO:0046219 GO:0046394 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0055044 GO:0060255 GO:0062012 GO:0065007 GO:0065009 GO:0070297 GO:0070298 GO:0070727 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071496 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1900376 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:1902680 GO:1903506 GO:1903508 GO:1905255 GO:2000070 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

352

Amino Acids

39.15

Weight (kDa)

5.56

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 15 - 62 4.3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 18 - 77 3.4e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 112 1.9e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 1.6e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 993
Acc65I GGTACC 1 cut(s) 398
AccB1I GGYRCC 1 cut(s) 398
AciI CCGC 3 cut(s) 7, 94, 150
AclI AACGTT 4 cut(s) 229, 346, 765, 855
AclWI GGATC 1 cut(s) 362
AcsI RAATTY 1 cut(s) 496
AcuI CTGAAG 1 cut(s) 237
AcyI GRCGYC 2 cut(s) 990, 1004
AfaI GTAC 2 cut(s) 400, 827
AflIII ACRYGT 1 cut(s) 776
AgsI TTSAA 3 cut(s) 234, 526, 935
AhlI ACTAGT 2 cut(s) 449, 611
AjiI CACGTC 1 cut(s) 777
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 7 cut(s) 26, 50, 76, 134, 159, 281, 536
AluI AGCT 7 cut(s) 26, 50, 76, 134, 159, 281, 536
AlwI GGATC 1 cut(s) 362
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 2 cut(s) 174, 595
ApeKI GCWGC 1 cut(s) 159
ApoI RAATTY 1 cut(s) 496
ArsI GACNNNNNNTTYG 2 cut(s) 766, 798
Asp718I GGTACC 1 cut(s) 398
AspS9I GGNCC 3 cut(s) 174, 596, 717
AsuC2I CCSGG 1 cut(s) 422
AsuHPI GGTGA 1 cut(s) 113
AvaI CYCGRG 1 cut(s) 59
AvaII GGWCC 1 cut(s) 717
BanI GGYRCC 1 cut(s) 398
BauI CACGAG 2 cut(s) 282, 974
BbsI GAAGAC 1 cut(s) 225
BbvI GCAGC 1 cut(s) 146
BccI CCATC 3 cut(s) 105, 165, 752
BceAI ACGGC 1 cut(s) 274
BcgI CGANNNNNNTGC 2 cut(s) 678, 712
BciT130I CCWGG 1 cut(s) 294
BciVI GTATCC 1 cut(s) 862
BclI TGATCA 1 cut(s) 351
BcnI CCSGG 1 cut(s) 422
BcuI ACTAGT 2 cut(s) 449, 611
BfaI CTAG 4 cut(s) 32, 450, 516, 612
BfmI CTRYAG 2 cut(s) 160, 276
BfuI GTATCC 1 cut(s) 862
BisI GCNGC 2 cut(s) 151, 160
BlsI GCNGC 2 cut(s) 152, 161
Bme1390I CCNGG 2 cut(s) 294, 422
Bme18I GGWCC 1 cut(s) 717
BmeT110I CYCGRG 1 cut(s) 59
BmgBI CACGTC 1 cut(s) 777
BmgT120I GGNCC 3 cut(s) 174, 596, 717
BmiI GGNNCC 2 cut(s) 400, 718
BmrFI CCNGG 2 cut(s) 294, 422
BmsI GCATC 1 cut(s) 137
BoxI GACNNNNGTC 1 cut(s) 1007
BpiI GAAGAC 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 422
BsaBI GATNNNNATC 1 cut(s) 508
BsaHI GRCGYC 2 cut(s) 990, 1004
BsaJI CCNNGG 3 cut(s) 60, 97, 712
BsaWI WCCGGW 1 cut(s) 395
Bse118I RCCGGY 1 cut(s) 1006
Bse1I ACTGG 3 cut(s) 329, 371, 734
Bse8I GATNNNNATC 1 cut(s) 508
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 3 cut(s) 60, 97, 712
BseGI GGATG 2 cut(s) 116, 985
BseJI GATNNNNATC 1 cut(s) 508
BseMII CTCAG 2 cut(s) 158, 567
BseNI ACTGG 3 cut(s) 329, 371, 734
BseRI GAGGAG 2 cut(s) 219, 935
BseXI GCAGC 1 cut(s) 146
BshFI GGCC 2 cut(s) 176, 597
BshNI GGYRCC 1 cut(s) 398
BsiHKCI CYCGRG 1 cut(s) 59
BsiSI CCGG 3 cut(s) 396, 422, 1007
BslFI GGGAC 1 cut(s) 730
BsmFI GGGAC 1 cut(s) 730
BsnI GGCC 2 cut(s) 176, 597
BsoBI CYCGRG 1 cut(s) 59
Bsp143I GATC 5 cut(s) 67, 312, 351, 367, 460
Bsp19I CCATGG 1 cut(s) 712
BspACI CCGC 3 cut(s) 7, 94, 150
BspANI GGCC 2 cut(s) 176, 597
BspCNI CTCAG 2 cut(s) 159, 568
BspHI TCATGA 2 cut(s) 909, 948
BspLI GGNNCC 2 cut(s) 400, 718
BspMAI CTGCAG 1 cut(s) 164
BspPI GGATC 1 cut(s) 362
BspT107I GGYRCC 1 cut(s) 398
BsrFI RCCGGY 1 cut(s) 1006
BsrI ACTGG 3 cut(s) 329, 371, 734
BssAI RCCGGY 1 cut(s) 1006
BssECI CCNNGG 3 cut(s) 60, 97, 712
BssMI GATC 5 cut(s) 67, 312, 351, 367, 460
BssNI GRCGYC 2 cut(s) 990, 1004
BssSI CACGAG 2 cut(s) 282, 974
BssT1I CCWWGG 1 cut(s) 712
Bst2BI CACGAG 2 cut(s) 282, 974
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 3 cut(s) 15, 101, 721
Bst6I CTCTTC 1 cut(s) 249
BstACI GRCGYC 2 cut(s) 990, 1004
BstAPI GCANNNNNTGC 1 cut(s) 159
BstDEI CTNAG 3 cut(s) 167, 185, 576
BstDSI CCRYGG 2 cut(s) 97, 712
BstF5I GGATG 2 cut(s) 116, 985
BstKTI GATC 5 cut(s) 70, 315, 354, 370, 463
BstMBI GATC 5 cut(s) 67, 312, 351, 367, 460
BstMWI GCNNNNNNNGC 2 cut(s) 156, 159
BstNI CCWGG 1 cut(s) 294
BstPAI GACNNNNGTC 1 cut(s) 1007
BstSCI CCNGG 2 cut(s) 292, 420
BstSFI CTRYAG 2 cut(s) 160, 276
BstV1I GCAGC 1 cut(s) 146
BstV2I GAAGAC 1 cut(s) 225
BsuI GTATCC 1 cut(s) 862
BsuRI GGCC 2 cut(s) 176, 597
BtgI CCRYGG 2 cut(s) 97, 712
BtrI CACGTC 1 cut(s) 777
BtsCI GGATG 2 cut(s) 116, 985
BtsI GCAGTG 1 cut(s) 939
BtsIMutI CAGTG 2 cut(s) 213, 939
CciI TCATGA 2 cut(s) 909, 948
Cfr10I RCCGGY 1 cut(s) 1006
Cfr13I GGNCC 3 cut(s) 174, 596, 717
CseI GACGC 1 cut(s) 1012
Csp6I GTAC 2 cut(s) 399, 826
CviAII CATG 4 cut(s) 458, 713, 910, 949
CviQI GTAC 2 cut(s) 399, 826
DdeI CTNAG 3 cut(s) 167, 185, 576
DpnI GATC 5 cut(s) 69, 314, 353, 369, 462
DpnII GATC 5 cut(s) 67, 312, 351, 367, 460
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 712
Eco47I GGWCC 1 cut(s) 717
Eco57I CTGAAG 1 cut(s) 237
Eco88I CYCGRG 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 712
ErhI CCWWGG 1 cut(s) 712
FaeI CATG 4 cut(s) 461, 716, 913, 952
FaiI YATR 8 cut(s) 278, 336, 389, 459, 714, 911, 950, 1014
FaqI GGGAC 1 cut(s) 730
FatI CATG 4 cut(s) 457, 712, 909, 948
FbaI TGATCA 1 cut(s) 351
Fnu4HI GCNGC 2 cut(s) 151, 160
FokI GGATG 2 cut(s) 123, 992
Fsp4HI GCNGC 2 cut(s) 151, 160
FspBI CTAG 4 cut(s) 32, 450, 516, 612
GluI GCNGC 2 cut(s) 151, 160
HaeIII GGCC 2 cut(s) 176, 597
HapII CCGG 3 cut(s) 396, 422, 1007
HgaI GACGC 1 cut(s) 1012
Hin1I GRCGYC 2 cut(s) 990, 1004
Hin1II CATG 4 cut(s) 461, 716, 913, 952
HincII GTYRAC 3 cut(s) 652, 672, 811
HindII GTYRAC 3 cut(s) 652, 672, 811
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 8 cut(s) 55, 138, 555, 653, 659, 700, 800, 923
HpaI GTTAAC 1 cut(s) 811
HpaII CCGG 3 cut(s) 396, 422, 1007
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 6 cut(s) 213, 287, 652, 672, 789, 811
Hpy8I GTNNAC 6 cut(s) 213, 287, 652, 672, 789, 811
Hpy99I CGWCG 2 cut(s) 992, 995
HpyAV CCTTC 3 cut(s) 98, 263, 694
HpyCH4III ACNGT 3 cut(s) 15, 101, 721
HpyCH4IV ACGT 9 cut(s) 229, 346, 753, 765, 776, 791, 855, 990, 1018
HpyCH4V TGCA 3 cut(s) 21, 162, 725
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 159
HpyF3I CTNAG 3 cut(s) 167, 185, 576
HpySE526I ACGT 9 cut(s) 229, 346, 753, 765, 776, 791, 855, 990, 1018
Hsp92I GRCGYC 2 cut(s) 990, 1004
Hsp92II CATG 4 cut(s) 461, 716, 913, 952
KpnI GGTACC 1 cut(s) 402
Ksp22I TGATCA 1 cut(s) 351
KspAI GTTAAC 1 cut(s) 811
Kzo9I GATC 5 cut(s) 67, 312, 351, 367, 460
LmnI GCTCC 1 cut(s) 47
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 1 cut(s) 137
MaeI CTAG 4 cut(s) 32, 450, 516, 612
MaeII ACGT 9 cut(s) 229, 346, 753, 765, 776, 791, 855, 990, 1018
MaeIII GTNAC 5 cut(s) 373, 452, 614, 761, 1000
MalI GATC 5 cut(s) 69, 314, 353, 369, 462
MboI GATC 5 cut(s) 67, 312, 351, 367, 460
MluCI AATT 4 cut(s) 178, 496, 835, 1038
MlyI GAGTC 4 cut(s) 49, 132, 647, 932
MmeI TCCRAC 1 cut(s) 897
MseI TTAA 6 cut(s) 38, 90, 438, 666, 768, 810
MslI CAYNNNNRTG 1 cut(s) 978
MspI CCGG 3 cut(s) 396, 422, 1007
MspR9I CCNGG 2 cut(s) 294, 422
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 2 cut(s) 156, 159
NciI CCSGG 1 cut(s) 422
NcoI CCATGG 1 cut(s) 712
NdeII GATC 5 cut(s) 67, 312, 351, 367, 460
NlaIII CATG 4 cut(s) 461, 716, 913, 952
NlaIV GGNNCC 2 cut(s) 400, 718
NmuCI GTSAC 3 cut(s) 452, 614, 1000
PagI TCATGA 2 cut(s) 909, 948
PcsI WCGNNNNNNNCGW 1 cut(s) 782
PfeI GAWTC 4 cut(s) 555, 659, 700, 800
PfoI TCCNGGA 1 cut(s) 420
PkrI GCNGC 2 cut(s) 152, 161
PleI GAGTC 4 cut(s) 49, 132, 647, 931
PpsI GAGTC 4 cut(s) 49, 132, 647, 931
PshAI GACNNNNGTC 1 cut(s) 1007
Psp1406I AACGTT 4 cut(s) 229, 346, 765, 855
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 2 cut(s) 400, 718
PspPI GGNCC 3 cut(s) 174, 596, 717
PstI CTGCAG 1 cut(s) 164
RsaI GTAC 2 cut(s) 400, 827
RsaNI GTAC 2 cut(s) 399, 826
RseI CAYNNNNRTG 1 cut(s) 978
SaqAI TTAA 6 cut(s) 38, 90, 438, 666, 768, 810
SatI GCNGC 2 cut(s) 151, 160
Sau3AI GATC 5 cut(s) 67, 312, 351, 367, 460
Sau96I GGNCC 3 cut(s) 174, 596, 717
SchI GAGTC 4 cut(s) 49, 132, 647, 932
ScrFI CCNGG 2 cut(s) 294, 422
SfaNI GCATC 1 cut(s) 137
SfcI CTRYAG 2 cut(s) 160, 276
SinI GGWCC 1 cut(s) 717
SmiMI CAYNNNNRTG 1 cut(s) 978
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
SpeI ACTAGT 2 cut(s) 449, 611
Sse9I AATT 4 cut(s) 178, 496, 835, 1038
SsiI CCGC 3 cut(s) 7, 94, 150
SspMI CTAG 4 cut(s) 32, 450, 516, 612
StyD4I CCNGG 2 cut(s) 292, 420
StyI CCWWGG 1 cut(s) 712
TaaI ACNGT 3 cut(s) 15, 101, 721
TaiI ACGT 9 cut(s) 232, 349, 756, 768, 779, 794, 858, 993, 1021
TaqI TCGA 2 cut(s) 698, 743
TasI AATT 4 cut(s) 178, 496, 835, 1038
TatI WGTACW 1 cut(s) 825
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 4 cut(s) 555, 659, 700, 800
Tru1I TTAA 6 cut(s) 38, 90, 438, 666, 768, 810
Tru9I TTAA 6 cut(s) 38, 90, 438, 666, 768, 810
TscAI CASTG 2 cut(s) 220, 946
TseFI GTSAC 3 cut(s) 452, 614, 1000
TseI GCWGC 1 cut(s) 159
Tsp45I GTSAC 3 cut(s) 452, 614, 1000
TspDTI ATGAA 7 cut(s) 729, 898, 915, 937, 965, 996, 1029
TspGWI ACGGA 2 cut(s) 637, 796
TspRI CASTG 2 cut(s) 220, 946
VpaK11BI GGWCC 1 cut(s) 717
XapI RAATTY 1 cut(s) 496
XcmI CCANNNNNNNNNTGG 1 cut(s) 104
XspI CTAG 4 cut(s) 32, 450, 516, 612
ZraI GACGTC 1 cut(s) 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.