AT1G18710
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
N/A
Physical Location & Seq
Forward (+)
6450585 .. 6453263
2679 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G18710.1

Sequence Viewer

Length: 804 bp
ATGGGGAGGACGACATGGTTCGACGTCGACGGGATGAAGAAAGGAGAGTGGACGGCAGAGGAAGACCAGAAGCTCGGCGCTTACATCAACGAGCATGGCGTTTGTGATTGGCGTTCCCTCCCCAAAAGAGCTGGTTTGCAGAGATGTGGAAAGAGCTGCAGATTAAGGTGGCTTAACTATCTAAAGCCTGGGATTAGAAGAGGCAAATTCACTCCTCAAGAAGAAGAAGAAATCATCCAACTTCATGCTGTTCTCGGAAACAGGTGGGCAGCCATGGCGAAGAAGATGCAGAATCGAACAGACAATGATATCAAGAACCATTGGAACTCTTGTCTCAAGAAAAGACTTTCGAGAAAGGGAATCGACCCTATGACCCACGAGCCCATCATCAAACACCTCACCGTCAATACCACTAACGCAGATTGTGGTAACTCTTCCACCACGACGTCCCCGTCGACGACGGAAAGCTCTCCTTCCTCCGGCTCGTCTCGTCTTCTTAACAAACTCGCCGCAGGTATCTCATCTAGACAACATAGTCTCGATAGGATCAAGTACATCTTGTCGAATTCAATAATCGAAAGCAGTGATCAAGCAAAAGAGGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAAGAGATTCAATGATGGGTCAGAAGATTGACGGTAGTGAAGGAGAAGATATTCAGATTTGGGGCGAGGAGGAAGTTAGGCGTTTAATGGAGATTGATGCAATGGATATGTACGAGATGACTTCGTACGACGCTGTCATGTACGAGAGTAGTCACATACTTGATCATCTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

267

Amino Acids

30.59

Weight (kDa)

5.49

Isoelectric Point (pI)

65.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 4.6e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.2e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 7.8e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 120 5.6e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 451, 534
AatII GACGTC 2 cut(s) 27, 449
Acc36I ACCTGC 1 cut(s) 503
AccI GTMKAC 2 cut(s) 27, 455
AciI CCGC 1 cut(s) 510
AclWI GGATC 1 cut(s) 554
AcsI RAATTY 2 cut(s) 206, 565
AcyI GRCGYC 2 cut(s) 24, 446
AfaI GTAC 4 cut(s) 554, 740, 755, 770
AfiI CCNNNNNNNGG 1 cut(s) 479
AgsI TTSAA 2 cut(s) 570, 639
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 4 cut(s) 73, 131, 156, 468
AluI AGCT 4 cut(s) 73, 131, 156, 468
Alw26I GTCTC 3 cut(s) 338, 492, 542
AlwI GGATC 1 cut(s) 554
ApeKI GCWGC 2 cut(s) 156, 269
ApoI RAATTY 2 cut(s) 206, 565
Asp700I GAANNNNTTC 1 cut(s) 678
AspLEI GCGC 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 391
BanII GRGCYC 1 cut(s) 384
BauI CACGAG 1 cut(s) 377
BbsI GAAGAC 2 cut(s) 69, 485
BbvI GCAGC 2 cut(s) 143, 281
BccI CCATC 2 cut(s) 392, 637
BceAI ACGGC 1 cut(s) 69
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BciT130I CCWGG 1 cut(s) 189
BclI TGATCA 2 cut(s) 586, 790
BcoDI GTCTC 3 cut(s) 338, 492, 542
BfaI CTAG 1 cut(s) 525
BfmI CTRYAG 1 cut(s) 157
BfoI RGCGCY 1 cut(s) 81
BfuAI ACCTGC 1 cut(s) 503
BisI GCNGC 3 cut(s) 157, 270, 510
BlsI GCNGC 3 cut(s) 158, 271, 511
Bme1390I CCNGG 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 189
BmsI GCATC 2 cut(s) 276, 715
BpiI GAAGAC 2 cut(s) 69, 485
BpuEI CTTGAG 2 cut(s) 201, 320
BsaHI GRCGYC 2 cut(s) 24, 446
BsaJI CCNNGG 2 cut(s) 188, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 479
Bse3DI GCAATG 1 cut(s) 735
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 2 cut(s) 188, 273
BseGI GGATG 2 cut(s) 39, 234
BseLI CCNNNNNNNGG 1 cut(s) 479
BseMI GCAATG 1 cut(s) 735
BseRI GAGGAG 2 cut(s) 204, 710
BseXI GCAGC 2 cut(s) 143, 281
BsiSI CCGG 1 cut(s) 480
BsiWI CGTACG 1 cut(s) 753
BslFI GGGAC 1 cut(s) 433
BslI CCNNNNNNNGG 1 cut(s) 479
BsmAI GTCTC 3 cut(s) 338, 492, 542
BsmBI CGTCTC 1 cut(s) 492
BsmFI GGGAC 1 cut(s) 433
Bsp1286I GDGCHC 1 cut(s) 384
Bsp143I GATC 3 cut(s) 546, 586, 790
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 1 cut(s) 510
BspMAI CTGCAG 1 cut(s) 161
BspMI ACCTGC 1 cut(s) 503
BspPI GGATC 1 cut(s) 554
BsrDI GCAATG 1 cut(s) 735
BssECI CCNNGG 2 cut(s) 188, 273
BssMI GATC 3 cut(s) 546, 586, 790
BssNI GRCGYC 2 cut(s) 24, 446
BssSI CACGAG 1 cut(s) 377
BssT1I CCWWGG 1 cut(s) 273
Bst2BI CACGAG 1 cut(s) 377
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 403, 662
Bst6I CTCTTC 2 cut(s) 193, 439
BstACI GRCGYC 2 cut(s) 24, 446
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 2 cut(s) 39, 234
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 3 cut(s) 549, 589, 793
BstMAI GTCTC 3 cut(s) 338, 492, 542
BstMBI GATC 3 cut(s) 546, 586, 790
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 2 cut(s) 143, 281
BstV2I GAAGAC 2 cut(s) 69, 485
BtgI CCRYGG 1 cut(s) 273
BtsCI GGATG 2 cut(s) 39, 234
BtsI GCAGTG 1 cut(s) 589
BtsIMutI CAGTG 1 cut(s) 589
BveI ACCTGC 1 cut(s) 503
CfoI GCGC 1 cut(s) 80
CseI GACGC 1 cut(s) 767
Csp6I GTAC 4 cut(s) 553, 739, 754, 769
CviAII CATG 5 cut(s) 15, 95, 245, 274, 766
CviJI RGCY 9 cut(s) 73, 131, 156, 172, 187, 272, 382, 468, 483
CviKI_1 RGCY 9 cut(s) 73, 131, 156, 172, 187, 272, 382, 468, 483
CviQI GTAC 4 cut(s) 553, 739, 754, 769
DpnI GATC 3 cut(s) 548, 588, 792
DpnII GATC 3 cut(s) 546, 586, 790
DrdI GACNNNNNNGTC 2 cut(s) 451, 534
DseDI GACNNNNNNGTC 2 cut(s) 451, 534
Eam1104I CTCTTC 2 cut(s) 193, 439
EarI CTCTTC 2 cut(s) 193, 439
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 384
Eco32I GATATC 1 cut(s) 310
EcoRI GAATTC 1 cut(s) 565
EcoRII CCWGG 1 cut(s) 187
EcoRV GATATC 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 273
Esp3I CGTCTC 1 cut(s) 492
FaeI CATG 5 cut(s) 18, 98, 248, 277, 769
FaiI YATR 9 cut(s) 16, 96, 246, 275, 371, 534, 737, 767, 785
FalI AAGNNNNNCTT 4 cut(s) 457, 489, 542, 574
FaqI GGGAC 1 cut(s) 433
FatI CATG 5 cut(s) 14, 94, 244, 273, 765
FbaI TGATCA 2 cut(s) 586, 790
FblI GTMKAC 2 cut(s) 27, 455
Fnu4HI GCNGC 3 cut(s) 157, 270, 510
FokI GGATG 2 cut(s) 46, 221
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 3 cut(s) 157, 270, 510
FspBI CTAG 1 cut(s) 525
GlaI GCGC 1 cut(s) 79
GluI GCNGC 3 cut(s) 157, 270, 510
HaeII RGCGCY 1 cut(s) 81
HapII CCGG 1 cut(s) 480
HgaI GACGC 1 cut(s) 767
HhaI GCGC 1 cut(s) 80
Hin1I GRCGYC 2 cut(s) 24, 446
Hin1II CATG 5 cut(s) 18, 98, 248, 277, 769
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HincII GTYRAC 2 cut(s) 28, 456
HindII GTYRAC 2 cut(s) 28, 456
HinfI GANTC 3 cut(s) 292, 360, 635
HpaII CCGG 1 cut(s) 480
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 3 cut(s) 28, 51, 456
Hpy188I TCNGA 3 cut(s) 257, 651, 684
Hpy188III TCNNGA 6 cut(s) 218, 313, 337, 351, 525, 539
Hpy8I GTNNAC 3 cut(s) 28, 51, 456
Hpy99I CGWCG 8 cut(s) 26, 29, 32, 448, 457, 460, 463, 761
HpyAV CCTTC 2 cut(s) 483, 662
HpyCH4III ACNGT 2 cut(s) 403, 662
HpyCH4IV ACGT 2 cut(s) 24, 446
HpyCH4V TGCA 4 cut(s) 139, 159, 289, 728
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpySE526I ACGT 2 cut(s) 24, 446
Hsp92I GRCGYC 2 cut(s) 24, 446
Hsp92II CATG 5 cut(s) 18, 98, 248, 277, 769
HspAI GCGC 1 cut(s) 78
Ksp22I TGATCA 2 cut(s) 586, 790
Kzo9I GATC 3 cut(s) 546, 586, 790
LpnPI CCDG 7 cut(s) 80, 117, 174, 201, 247, 493, 498
Lsp1109I GCAGC 2 cut(s) 143, 281
LweI GCATC 2 cut(s) 276, 715
MaeI CTAG 1 cut(s) 525
MaeII ACGT 2 cut(s) 24, 446
MaeIII GTNAC 2 cut(s) 428, 779
MalI GATC 3 cut(s) 548, 588, 792
MboI GATC 3 cut(s) 546, 586, 790
MhlI GDGCHC 1 cut(s) 384
MluCI AATT 2 cut(s) 206, 565
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 9 cut(s) 52, 128, 194, 225, 407, 487, 592, 688, 691
MroXI GAANNNNTTC 1 cut(s) 678
MseI TTAA 4 cut(s) 164, 174, 498, 713
MspI CCGG 1 cut(s) 480
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 275
NcoI CCATGG 1 cut(s) 273
NdeII GATC 3 cut(s) 546, 586, 790
NlaIII CATG 5 cut(s) 18, 98, 248, 277, 769
NmeAIII GCCGAG 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 779
PcsI WCGNNNNNNNCGW 3 cut(s) 96, 449, 452
PdmI GAANNNNTTC 1 cut(s) 678
PfeI GAWTC 3 cut(s) 292, 360, 635
Pfl23II CGTACG 1 cut(s) 753
PflFI GACNNNGTC 1 cut(s) 761
PkrI GCNGC 3 cut(s) 158, 271, 511
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspLI CGTACG 1 cut(s) 753
PstI CTGCAG 1 cut(s) 161
PsyI GACNNNGTC 1 cut(s) 761
RsaI GTAC 4 cut(s) 554, 740, 755, 770
RsaNI GTAC 4 cut(s) 553, 739, 754, 769
SalI GTCGAC 2 cut(s) 26, 454
SaqAI TTAA 4 cut(s) 164, 174, 498, 713
SatI GCNGC 3 cut(s) 157, 270, 510
Sau3AI GATC 3 cut(s) 546, 586, 790
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 1 cut(s) 384
SfaNI GCATC 2 cut(s) 276, 715
SfcI CTRYAG 1 cut(s) 157
SgrDI CGTCGACG 2 cut(s) 26, 454
SmlI CTYRAG 2 cut(s) 216, 335
SmoI CTYRAG 2 cut(s) 216, 335
Sse9I AATT 2 cut(s) 206, 565
SsiI CCGC 1 cut(s) 510
SspMI CTAG 1 cut(s) 525
StyD4I CCNGG 1 cut(s) 187
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 2 cut(s) 403, 662
TaiI ACGT 2 cut(s) 27, 449
TaqI TCGA 9 cut(s) 21, 27, 295, 350, 363, 455, 540, 563, 576
TasI AATT 2 cut(s) 206, 565
TatI WGTACW 1 cut(s) 552
TauI GCSGC 1 cut(s) 512
TfiI GAWTC 3 cut(s) 292, 360, 635
Tru1I TTAA 4 cut(s) 164, 174, 498, 713
Tru9I TTAA 4 cut(s) 164, 174, 498, 713
TscAI CASTG 1 cut(s) 589
TseFI GTSAC 1 cut(s) 779
TseI GCWGC 2 cut(s) 156, 269
Tsp45I GTSAC 1 cut(s) 779
TspDTI ATGAA 2 cut(s) 50, 233
TspGWI ACGGA 1 cut(s) 476
TspRI CASTG 1 cut(s) 589
Tth111I GACNNNGTC 1 cut(s) 761
XapI RAATTY 2 cut(s) 206, 565
XbaI TCTAGA 1 cut(s) 524
XmiI GTMKAC 2 cut(s) 27, 455
XmnI GAANNNNTTC 1 cut(s) 678
XspI CTAG 1 cut(s) 525
ZraI GACGTC 2 cut(s) 25, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.