Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6552752 .. 6554036

Gene Structure 1285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G18960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGTGAGATCTTGTTCTTCAAAATCAAAGAATCCTTGGACAAACGAAGAAGACACAACCCAAAAGTTTGTGTTTGCGTCTGCGTCCAAAAACGGATGTGCAGCTCCTAAGAAAATAGGACTTAGGAGATGTGGAAAGAGTTGCAGAGTGAGAAAGACTGATCATTCAGGAACCAAACATGAGAGCTTCACTTCTGAAGACGAAGATCTGATCATCAAGATGCACGCAGCAATGGGAAGCAGATGGCAACTTATTGCACAACATTTACCAGGAAAGACAGAAGAAGAAGTGAAGATGTTTTGGAACACAAAACTGAAGAAGAAACTGTCGGAAATGGGGATAGATCATGTCACTCACCGTCCCTTTTCTCACGTACTTGCTGAATACGGCAACATCAATGGTGGTGGAAACCTAAACCCTAATCCCTCGAACCAAGCCGGATCTCTTGGACGCAATCACTCGCTCAATGATGATGGTCATCAACAACAACCTAATGATTCAGGAGATCTCATGTTTCATTTACAAGCAATCAAGCTTATGACAGATTCATCGAACCAAGTCAAGCCTGAGTCTACGTTTGTGTACGCCTCTTCGTCTTCTTCTAACTCGTCTCCTCCATTGTTCTCTTCAACTTGTTCTACCATAGCTCAGGAGAATTCAGAGGTTAACTTCACTTGGTCTGACTTCCTTCTTGACCAAGAAACCTTCCATGAAAACCAACAGAATCATCCTCAAGAACTAGACAGCTTGTTTGGGAACGACTTCTCCGAGGTAACAGCAGCTACAATGGCTAACACATCAACCGTACCATCTCAGATCGAAGAAGAATCTTTGAGCAATGGGTTCGTTGAATCGATTATCGCTAAAGAAAAGGAGTTTTTCTTGGGATTTCCGAGCTATCTGGAACAACCTTTCCACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009555 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051252 GO:0052545 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

307

Amino Acids

34.22

Weight (kDa)

5.71

Isoelectric Point (pI)

53.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	61 - 103	8e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	63 - 110	4.9e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	572
AclWI	GGATC	1 cut(s)	448
AcsI	RAATTY	1 cut(s)	655
AcuI	CTGAAG	2 cut(s)	216, 335
AfaI	GTAC	3 cut(s)	375, 584, 807
AgsI	TTSAA	3 cut(s)	21, 630, 851
AjnI	CCWGG	1 cut(s)	268
AloI	GAACNNNNNNTCC	3 cut(s)	749, 781, 897
AluBI	AGCT	7 cut(s)	104, 186, 535, 647, 747, 782, 897
AluI	AGCT	7 cut(s)	104, 186, 535, 647, 747, 782, 897
Alw26I	GTCTC	1 cut(s)	615
AlwI	GGATC	1 cut(s)	448
ApeKI	GCWGC	3 cut(s)	101, 227, 779
ApoI	RAATTY	1 cut(s)	655
ArsI	GACNNNNNNTTYG	2 cut(s)	734, 766
Asp700I	GAANNNNTTC	1 cut(s)	761
AsuHPI	GGTGA	2 cut(s)	16, 347
BbsI	GAAGAC	3 cut(s)	57, 204, 588
BbvI	GCAGC	3 cut(s)	113, 239, 791
BccI	CCATC	3 cut(s)	237, 467, 817
BceAI	ACGGC	1 cut(s)	403
BcgI	CGANNNNNNTGC	2 cut(s)	826, 860
BciT130I	CCWGG	1 cut(s)	270
BclI	TGATCA	2 cut(s)	160, 210
BcoDI	GTCTC	1 cut(s)	615
BfaI	CTAG	1 cut(s)	740
BglII	AGATCT	3 cut(s)	8, 205, 505
BisI	GCNGC	3 cut(s)	102, 228, 780
BlsI	GCNGC	3 cut(s)	103, 229, 781
Bme1390I	CCNGG	1 cut(s)	270
BmiI	GGNNCC	1 cut(s)	172
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	1 cut(s)	210
BpiI	GAAGAC	3 cut(s)	57, 204, 588
Bpu10I	CCTNAGC	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	717
Bsa29I	ATCGAT	1 cut(s)	854
BsaAI	YACGTR	1 cut(s)	373
BsaBI	GATNNNNATC	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	35, 768
BsaXI	ACNNNNNCTCC	2 cut(s)	749, 779
Bse3DI	GCAATG	2 cut(s)	237, 844
Bse8I	GATNNNNATC	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	270
BseCI	ATCGAT	1 cut(s)	854
BseDI	CCNNGG	2 cut(s)	35, 768
BseGI	GGATG	2 cut(s)	101, 727
BseJI	GATNNNNATC	1 cut(s)	477
BseMI	GCAATG	2 cut(s)	237, 844
BseMII	CTCAG	3 cut(s)	558, 662, 827
BseRI	GAGGAG	1 cut(s)	603
BseXI	GCAGC	3 cut(s)	113, 239, 791
BsgI	GTGCAG	1 cut(s)	120
BshVI	ATCGAT	1 cut(s)	854
BsiSI	CCGG	1 cut(s)	438
BslFI	GGGAC	1 cut(s)	345
BsmAI	GTCTC	1 cut(s)	615
BsmBI	CGTCTC	1 cut(s)	615
BsmFI	GGGAC	1 cut(s)	345
Bsp143I	GATC	8 cut(s)	8, 160, 205, 210, 343, 440, 505, 816
BspCNI	CTCAG	3 cut(s)	559, 661, 826
BspDI	ATCGAT	1 cut(s)	854
BspLI	GGNNCC	1 cut(s)	172
BspPI	GGATC	1 cut(s)	448
BsrDI	GCAATG	2 cut(s)	237, 844
BssECI	CCNNGG	2 cut(s)	35, 768
BssMI	GATC	8 cut(s)	8, 160, 205, 210, 343, 440, 505, 816
BssT1I	CCWWGG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	3 cut(s)	327, 359, 805
Bst6I	CTCTTC	2 cut(s)	595, 631
BstBAI	YACGTR	1 cut(s)	373
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	5 cut(s)	108, 122, 567, 648, 813
BstF5I	GGATG	2 cut(s)	101, 727
BstKTI	GATC	8 cut(s)	11, 163, 208, 213, 346, 443, 508, 819
BstMAI	GTCTC	1 cut(s)	615
BstMBI	GATC	8 cut(s)	8, 160, 205, 210, 343, 440, 505, 816
BstMWI	GCNNNNNNNGC	1 cut(s)	788
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	268
BstV1I	GCAGC	3 cut(s)	113, 239, 791
BstV2I	GAAGAC	3 cut(s)	57, 204, 588
BstX2I	RGATCY	4 cut(s)	8, 205, 440, 505
BstYI	RGATCY	4 cut(s)	8, 205, 440, 505
Bsu15I	ATCGAT	1 cut(s)	854
BsuTUI	ATCGAT	1 cut(s)	854
BtsCI	GGATG	2 cut(s)	101, 727
Cac8I	GCNNGC	1 cut(s)	225
ClaI	ATCGAT	1 cut(s)	854
CseI	GACGC	3 cut(s)	66, 72, 459
Csp6I	GTAC	3 cut(s)	374, 583, 806
CspCI	CAANNNNNGTGG	2 cut(s)	385, 420
CviAII	CATG	4 cut(s)	179, 347, 511, 710
CviQI	GTAC	3 cut(s)	374, 583, 806
DdeI	CTNAG	5 cut(s)	108, 122, 567, 648, 813
DpnI	GATC	8 cut(s)	10, 162, 207, 212, 345, 442, 507, 818
DpnII	GATC	8 cut(s)	8, 160, 205, 210, 343, 440, 505, 816
Eam1104I	CTCTTC	2 cut(s)	595, 631
EarI	CTCTTC	2 cut(s)	595, 631
Eco130I	CCWWGG	1 cut(s)	35
Eco57I	CTGAAG	2 cut(s)	216, 335
EcoRI	GAATTC	1 cut(s)	655
EcoRII	CCWGG	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	35
Esp3I	CGTCTC	1 cut(s)	615
FaeI	CATG	4 cut(s)	182, 350, 514, 713
FaiI	YATR	6 cut(s)	180, 348, 512, 539, 644, 711
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	4 cut(s)	178, 346, 510, 709
FbaI	TGATCA	2 cut(s)	160, 210
FblI	GTMKAC	1 cut(s)	572
Fnu4HI	GCNGC	3 cut(s)	102, 228, 780
FokI	GGATG	2 cut(s)	108, 714
Fsp4HI	GCNGC	3 cut(s)	102, 228, 780
FspBI	CTAG	1 cut(s)	740
GluI	GCNGC	3 cut(s)	102, 228, 780
HapII	CCGG	1 cut(s)	438
HgaI	GACGC	3 cut(s)	66, 72, 459
Hin1II	CATG	4 cut(s)	182, 350, 514, 713
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	7 cut(s)	31, 497, 545, 569, 724, 827, 851
HpaI	GTTAAC	1 cut(s)	667
HpaII	CCGG	1 cut(s)	438
HphI	GGTGA	2 cut(s)	16, 347
Hpy166II	GTNNAC	3 cut(s)	573, 583, 667
Hpy188I	TCNGA	8 cut(s)	196, 210, 331, 661, 682, 769, 816, 894
Hpy188III	TCNNGA	7 cut(s)	168, 217, 501, 650, 692, 734, 902
Hpy8I	GTNNAC	3 cut(s)	573, 583, 667
HpyAV	CCTTC	2 cut(s)	698, 715
HpyCH4III	ACNGT	3 cut(s)	327, 359, 805
HpyCH4IV	ACGT	2 cut(s)	372, 575
HpyCH4V	TGCA	4 cut(s)	101, 144, 223, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	788
HpyF3I	CTNAG	5 cut(s)	108, 122, 567, 648, 813
HpySE526I	ACGT	2 cut(s)	372, 575
Hsp92II	CATG	4 cut(s)	182, 350, 514, 713
Ksp22I	TGATCA	2 cut(s)	160, 210
KspAI	GTTAAC	1 cut(s)	667
Kzo9I	GATC	8 cut(s)	8, 160, 205, 210, 343, 440, 505, 816
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	8 cut(s)	153, 255, 282, 451, 486, 579, 635, 887
Lsp1109I	GCAGC	3 cut(s)	113, 239, 791
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	1 cut(s)	740
MaeII	ACGT	2 cut(s)	372, 575
MaeIII	GTNAC	2 cut(s)	349, 772
MalI	GATC	8 cut(s)	10, 162, 207, 212, 345, 442, 507, 818
MboI	GATC	8 cut(s)	8, 160, 205, 210, 343, 440, 505, 816
MflI	RGATCY	4 cut(s)	8, 205, 440, 505
MluCI	AATT	1 cut(s)	655
MlyI	GAGTC	1 cut(s)	578
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	6 cut(s)	436, 598, 624, 655, 741, 763
MroXI	GAANNNNTTC	1 cut(s)	761
MseI	TTAA	1 cut(s)	666
MslI	CAYNNNNRTG	1 cut(s)	218
MspI	CCGG	1 cut(s)	438
MspR9I	CCNGG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	788
NdeII	GATC	8 cut(s)	8, 160, 205, 210, 343, 440, 505, 816
NlaIII	CATG	4 cut(s)	182, 350, 514, 713
NlaIV	GGNNCC	1 cut(s)	172
NmuCI	GTSAC	1 cut(s)	349
PcsI	WCGNNNNNNNCGW	1 cut(s)	765
PdmI	GAANNNNTTC	1 cut(s)	761
PfeI	GAWTC	6 cut(s)	31, 497, 545, 724, 827, 851
PkrI	GCNGC	3 cut(s)	103, 229, 781
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
Ppu21I	YACGTR	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	172
PsuI	RGATCY	4 cut(s)	8, 205, 440, 505
RsaI	GTAC	3 cut(s)	375, 584, 807
RsaNI	GTAC	3 cut(s)	374, 583, 806
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	666
SatI	GCNGC	3 cut(s)	102, 228, 780
Sau3AI	GATC	8 cut(s)	8, 160, 205, 210, 343, 440, 505, 816
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	1 cut(s)	270
SfaNI	GCATC	1 cut(s)	210
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	732
SmoI	CTYRAG	1 cut(s)	732
Sse9I	AATT	1 cut(s)	655
SspMI	CTAG	1 cut(s)	740
StyD4I	CCNGG	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	3 cut(s)	327, 359, 805
TaiI	ACGT	2 cut(s)	375, 578
TaqI	TCGA	4 cut(s)	428, 551, 819, 854
TasI	AATT	1 cut(s)	655
TfiI	GAWTC	6 cut(s)	31, 497, 545, 724, 827, 851
Tru1I	TTAA	1 cut(s)	666
Tru9I	TTAA	1 cut(s)	666
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	3 cut(s)	101, 227, 779
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	3 cut(s)	506, 537, 726
TspGWI	ACGGA	1 cut(s)	108
XapI	RAATTY	1 cut(s)	655
XmiI	GTMKAC	1 cut(s)	572
XmnI	GAANNNNTTC	1 cut(s)	761
XspI	CTAG	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.