AT1G19086
TCP Family

protein refolding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
N/A
Physical Location & Seq
Forward (+)
6588542 .. 6589338
797 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19086.1

Sequence Viewer

Length: 462 bp
ATGGTTCGTTTGTCGTTATTCCTTGTTCAAATTGGTTTGGGTTTGCTCATGGTTCCCGACGGTCCTCAGCCTACGACTGAACAAGTTGAAGAAACCATGGAGAAATATTGTGAACAAGGTGACAAGAAAATTGAGGAAATCAACAAGCGCTTGAGGACGGGCCAGAGAAAACCAATATCCACTAGTGAGAATATTGAGAAAGGAGAGCACTGGGATCATGACACTAGTTGCTCGGATGATGAGGATGTTGGTGATACTGAAAGCTATCATGTTCCAAGTGCAATGAGGGATTTTCTAGATATAGATAGCGAGGCATTCCTTAGCAATTCAGGTAGAGACATGAAGAACATTCTTAACAAGGTCAAGGAATCTGAGAAAAAAGTCCAGGTAACTTATCTCTGCTCTGGTTTGTTTGATGAGATAAGTTCAGAGTCTTTCTTATTCGAGAAAAGGTTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cpn60_TCP1

Protein Analysis

153

Amino Acids

17.53

Weight (kDa)

4.68

Isoelectric Point (pI)

55.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 222
AfeI AGCGCT 1 cut(s) 149
AgsI TTSAA 2 cut(s) 29, 89
AhlI ACTAGT 2 cut(s) 182, 224
AjnI CCWGG 1 cut(s) 384
AluBI AGCT 1 cut(s) 264
AluI AGCT 1 cut(s) 264
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 330
AlwI GGATC 1 cut(s) 222
Aor51HI AGCGCT 1 cut(s) 149
AoxI GGCC 1 cut(s) 160
AspLEI GCGC 1 cut(s) 150
AspS9I GGNCC 2 cut(s) 62, 160
AsuHPI GGTGA 2 cut(s) 131, 263
AvaII GGWCC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 210
BbvCI CCTCAGC 1 cut(s) 66
BciT130I CCWGG 1 cut(s) 386
BcoDI GTCTC 1 cut(s) 330
BcuI ACTAGT 2 cut(s) 182, 224
BfaI CTAG 3 cut(s) 183, 225, 296
BfoI RGCGCY 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 386
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 2 cut(s) 62, 160
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 386
BmrI ACTGGG 1 cut(s) 220
BmuI ACTGGG 1 cut(s) 220
Bpu10I CCTNAGC 2 cut(s) 66, 320
BpuEI CTTGAG 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 96
Bse1I ACTGG 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 288
BseBI CCWGG 1 cut(s) 386
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 2 cut(s) 241, 250
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 2 cut(s) 80, 363
BseNI ACTGG 1 cut(s) 215
BshFI GGCC 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 330
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 1 cut(s) 214
Bsp19I CCATGG 1 cut(s) 96
BspANI GGCC 1 cut(s) 162
BspCNI CTCAG 2 cut(s) 79, 364
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 54
BspPI GGATC 1 cut(s) 222
BsrDI GCAATG 1 cut(s) 288
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 1 cut(s) 214
BssT1I CCWWGG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 1 cut(s) 62
BstDEI CTNAG 3 cut(s) 66, 320, 372
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 2 cut(s) 241, 250
BstH2I RGCGCY 1 cut(s) 151
BstHHI GCGC 1 cut(s) 150
BstKTI GATC 1 cut(s) 217
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 1 cut(s) 214
BstNI CCWGG 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 384
BsuRI GGCC 1 cut(s) 162
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 2 cut(s) 241, 250
BtsIMutI CAGTG 1 cut(s) 208
CciI TCATGA 1 cut(s) 217
CfoI GCGC 1 cut(s) 150
Cfr13I GGNCC 2 cut(s) 62, 160
CviAII CATG 5 cut(s) 49, 97, 218, 269, 340
CviJI RGCY 3 cut(s) 70, 162, 264
CviKI_1 RGCY 3 cut(s) 70, 162, 264
DdeI CTNAG 3 cut(s) 66, 320, 372
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 62
Eco47III AGCGCT 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 384
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 5 cut(s) 52, 100, 221, 272, 343
FaiI YATR 6 cut(s) 50, 98, 219, 270, 302, 341
FatI CATG 5 cut(s) 48, 96, 217, 268, 339
FokI GGATG 2 cut(s) 248, 257
FspBI CTAG 3 cut(s) 183, 225, 296
GlaI GCGC 1 cut(s) 149
HaeII RGCGCY 1 cut(s) 151
HaeIII GGCC 1 cut(s) 162
HhaI GCGC 1 cut(s) 150
Hin1II CATG 5 cut(s) 52, 100, 221, 272, 343
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HinfI GANTC 2 cut(s) 368, 431
HphI GGTGA 2 cut(s) 131, 263
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 3 cut(s) 235, 373, 430
Hpy188III TCNNGA 4 cut(s) 56, 218, 296, 445
Hpy8I GTNNAC 1 cut(s) 113
Hpy99I CGWCG 1 cut(s) 62
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 281
HpyF3I CTNAG 3 cut(s) 66, 320, 372
Hsp92II CATG 5 cut(s) 52, 100, 221, 272, 343
HspAI GCGC 1 cut(s) 148
Kzo9I GATC 1 cut(s) 214
LpnPI CCDG 6 cut(s) 176, 196, 315, 371, 390, 398
MaeI CTAG 3 cut(s) 183, 225, 296
MaeIII GTNAC 2 cut(s) 119, 388
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 2 cut(s) 101, 355
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 3 cut(s) 30, 129, 325
MlyI GAGTC 1 cut(s) 440
MnlI CCTC 6 cut(s) 75, 127, 147, 235, 279, 304
MseI TTAA 1 cut(s) 354
MspR9I CCNGG 1 cut(s) 386
Mva1269I GAATGC 1 cut(s) 314
MvaI CCWGG 1 cut(s) 386
NcoI CCATGG 1 cut(s) 96
NdeII GATC 1 cut(s) 214
NlaIII CATG 5 cut(s) 52, 100, 221, 272, 343
NlaIV GGNNCC 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 119
PagI TCATGA 1 cut(s) 217
PctI GAATGC 1 cut(s) 314
PfeI GAWTC 1 cut(s) 368
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
Psp6I CCWGG 1 cut(s) 384
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 2 cut(s) 62, 160
SaqAI TTAA 1 cut(s) 354
Sau3AI GATC 1 cut(s) 214
Sau96I GGNCC 2 cut(s) 62, 160
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 1 cut(s) 386
SduI GDGCHC 1 cut(s) 210
SetI ASST 6 cut(s) 121, 266, 334, 363, 390, 455
SinI GGWCC 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
SpeI ACTAGT 2 cut(s) 182, 224
Sse9I AATT 3 cut(s) 30, 129, 325
SspI AATATT 2 cut(s) 107, 193
SspMI CTAG 3 cut(s) 183, 225, 296
StyD4I CCNGG 1 cut(s) 384
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 1 cut(s) 444
TasI AATT 3 cut(s) 30, 129, 325
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 1 cut(s) 215
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 356
TspRI CASTG 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 62
XbaI TCTAGA 1 cut(s) 295
XspI CTAG 3 cut(s) 183, 225, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.