Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7789133 .. 7792139

Gene Structure 3007 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G22070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGAGATGATGAGCTCTTCTTCTTCTACTACTCAAGTTGTATCATTCAGAGACATGGGGATGTATGAACCATTTCAACAGTTATCTGGTTGGGAGAGTCCTTTCAAATCAGATATCAACAATATTACTAGTAATCAGAATAACAATCAGAGTTCTTCAACAACACTTGAGGTTGATGCTAGACCAGAAGCAGATGATAACAATAGAGTGAATTATACTTCTGTGTATAATAACTCTCTTGAAGCAGAACCGTCGAGTAATAATGATCAGGACGAAGACCGGATCAATGATAAGATGAAACGGCGTTTGGCTCAGAACCGAGAAGCTGCTCGCAAAAGTCGTTTGAGAAAGAAGGCCCATGTTCAACAGTTAGAAGAAAGCCGGTTGAAGTTGTCACAGCTCGAGCAGGAACTTGTAAGAGCTAGGCAGCAGGGATTATGCGTACGCAATTCTTCAGATACTAGTTATCTAGGACCAGCTGGGAATATGAACTCAGGTATTGCTGCATTTGAGATGGAATACACACACTGGCTAGAAGAGCAAAACAGGAGAGTTAGTGAGATTCGAACAGCGCTCCAAGCTCATATAGGTGACATTGAGCTCAAAATGTTGGTAGATAGTTGCTTGAACCACTACGCAAATCTCTTCCGCATGAAAGCTGATGCTGCAAAGGCTGATGTGTTCTTCTTGATGTCGGGAATGTGGCGAACTTCAACTGAACGCTTCTTCCAATGGATTGGAGGTTTCCGCCCATCCGAGCTTTTAAATGTTGTGATGCCATACGTTGAGCCCTTAACCGATCAGCAACTGTTGGAGGTGCGTAACCTGCAACAGTCGTCTCAGCAAGCAGAGGAGGCTCTCTCTCAAGGCTTAGATAAACTTCAGCAGGGTTTGGTCGAAAGCATAGCAATTCAGATAAAAGTTGTTGAGTCTGTGAATCACGGGGCTCCAATGGCTTCAGCCATGGAGAATCTTCAAGCATTGGAGAGTTTTGTGAACCAGGCGGATCATCTGAGACAACAGACCCTGCAGCAAATGAGTAAGATATTGACGACAAGACAGGCTGCTCGAGGGTTGCTCGCTCTAGGAGAATACTTCCACAGGCTGCGTGCTCTTAGTTCTCTCTGGGCAGCTCGTCCACGAGAACACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

384

Amino Acids

43.75

Weight (kDa)

5.85

Isoelectric Point (pI)

59.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	97 - 136	3.5e-06	bZIP transcription factor
DOG1	PF14144	185 - 259	3.2e-29	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	834
AciI	CCGC	3 cut(s)	649, 748, 1004
AclWI	GGATC	2 cut(s)	290, 1014
AcuI	CTGAAG	3 cut(s)	438, 866, 942
AfaI	GTAC	1 cut(s)	444
AfeI	AGCGCT	1 cut(s)	573
AgsI	TTSAA	9 cut(s)	77, 106, 159, 242, 365, 388, 628, 714, 977
AhlI	ACTAGT	2 cut(s)	128, 461
AjnI	CCWGG	1 cut(s)	999
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AloI	GAACNNNNNNTCC	2 cut(s)	711, 743
Alw21I	GWGCWC	3 cut(s)	17, 603, 1114
Alw26I	GTCTC	3 cut(s)	45, 843, 1009
AlwI	GGATC	2 cut(s)	290, 1014
AlwNI	CAGNNNCTG	2 cut(s)	808, 1027
Ama87I	CYCGRG	2 cut(s)	401, 1068
Aor51HI	AGCGCT	1 cut(s)	573
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	8 cut(s)	326, 427, 503, 665, 1030, 1064, 1105, 1130
Asp700I	GAANNNNTTC	1 cut(s)	72
AspLEI	GCGC	1 cut(s)	574
AspS9I	GGNCC	2 cut(s)	355, 473
AsuHPI	GGTGA	1 cut(s)	602
AsuII	TTCGAA	1 cut(s)	565
AvaI	CYCGRG	2 cut(s)	401, 1068
AvaII	GGWCC	1 cut(s)	473
BanII	GRGCYC	4 cut(s)	17, 603, 792, 949
BauI	CACGAG	1 cut(s)	1140
BbsI	GAAGAC	1 cut(s)	282
Bbv12I	GWGCWC	3 cut(s)	17, 603, 1114
BbvI	GCAGC	8 cut(s)	313, 439, 490, 652, 1042, 1051, 1092, 1142
BccI	CCATC	2 cut(s)	508, 760
BceAI	ACGGC	1 cut(s)	317
BcgI	CGANNNNNNTGC	2 cut(s)	234, 268
BciT130I	CCWGG	1 cut(s)	1001
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	3 cut(s)	45, 843, 1009
BcuI	ACTAGT	2 cut(s)	128, 461
BfaI	CTAG	7 cut(s)	129, 180, 423, 462, 470, 533, 1085
BfmI	CTRYAG	1 cut(s)	1028
BfoI	RGCGCY	1 cut(s)	575
BfuAI	ACCTGC	1 cut(s)	834
BisI	GCNGC	8 cut(s)	327, 428, 504, 666, 1031, 1065, 1106, 1131
BlsI	GCNGC	8 cut(s)	328, 429, 505, 667, 1032, 1066, 1107, 1132
Bme1390I	CCNGG	1 cut(s)	1001
Bme18I	GGWCC	1 cut(s)	473
BmeT110I	CYCGRG	2 cut(s)	401, 1068
BmgT120I	GGNCC	2 cut(s)	355, 473
BmiI	GGNNCC	1 cut(s)	948
BmrFI	CCNGG	1 cut(s)	1001
BmsI	GCATC	3 cut(s)	166, 652, 765
BpiI	GAAGAC	1 cut(s)	282
BplI	GAGNNNNNCTC	4 cut(s)	845, 877, 1062, 1094
Bpu14I	TTCGAA	1 cut(s)	565
BpuEI	CTTGAG	3 cut(s)	18, 188, 849
BsaJI	CCNNGG	1 cut(s)	963
BsaWI	WCCGGW	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	541, 571
Bse118I	RCCGGY	1 cut(s)	381
Bse1I	ACTGG	1 cut(s)	533
BseBI	CCWGG	1 cut(s)	1001
BseDI	CCNNGG	1 cut(s)	963
BseGI	GGATG	2 cut(s)	66, 752
BseMII	CTCAG	4 cut(s)	326, 507, 854, 1004
BseNI	ACTGG	1 cut(s)	533
BseRI	GAGGAG	1 cut(s)	866
BseXI	GCAGC	8 cut(s)	313, 439, 490, 652, 1042, 1051, 1092, 1142
BseYI	CCCAGC	1 cut(s)	479
BshFI	GGCC	1 cut(s)	356
BsiHKAI	GWGCWC	3 cut(s)	17, 603, 1114
BsiHKCI	CYCGRG	2 cut(s)	401, 1068
BsiSI	CCGG	2 cut(s)	280, 382
BsiWI	CGTACG	1 cut(s)	442
BsmAI	GTCTC	3 cut(s)	45, 843, 1009
BsmBI	CGTCTC	1 cut(s)	843
BsnI	GGCC	1 cut(s)	356
BsoBI	CYCGRG	2 cut(s)	401, 1068
Bsp119I	TTCGAA	1 cut(s)	565
Bsp1286I	GDGCHC	5 cut(s)	17, 603, 792, 949, 1114
Bsp143I	GATC	4 cut(s)	265, 282, 799, 1006
Bsp19I	CCATGG	1 cut(s)	963
BspACI	CCGC	3 cut(s)	649, 748, 1004
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	4 cut(s)	325, 506, 853, 1005
BspLI	GGNNCC	1 cut(s)	948
BspMAI	CTGCAG	1 cut(s)	1032
BspMI	ACCTGC	1 cut(s)	834
BspPI	GGATC	2 cut(s)	290, 1014
BspQI	GCTCTTC	2 cut(s)	22, 531
BspT104I	TTCGAA	1 cut(s)	565
BsrFI	RCCGGY	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	533
BssAI	RCCGGY	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	963
BssMI	GATC	4 cut(s)	265, 282, 799, 1006
BssSI	CACGAG	1 cut(s)	1140
BssT1I	CCWWGG	1 cut(s)	963
Bst2BI	CACGAG	1 cut(s)	1140
Bst2UI	CCWGG	1 cut(s)	1001
Bst4CI	ACNGT	5 cut(s)	81, 252, 369, 810, 834
Bst6I	CTCTTC	3 cut(s)	22, 531, 650
BstBI	TTCGAA	1 cut(s)	565
BstC8I	GCNNGC	4 cut(s)	331, 846, 1080, 1110
BstDEI	CTNAG	6 cut(s)	312, 493, 840, 871, 1013, 1115
BstDSI	CCRYGG	1 cut(s)	963
BstF5I	GGATG	2 cut(s)	66, 752
BstH2I	RGCGCY	1 cut(s)	575
BstHHI	GCGC	1 cut(s)	574
BstKTI	GATC	4 cut(s)	268, 285, 802, 1009
BstMAI	GTCTC	3 cut(s)	45, 843, 1009
BstMBI	GATC	4 cut(s)	265, 282, 799, 1006
BstMWI	GCNNNNNNNGC	7 cut(s)	538, 578, 665, 671, 826, 854, 953
BstNI	CCWGG	1 cut(s)	1001
BstSCI	CCNGG	1 cut(s)	999
BstSFI	CTRYAG	1 cut(s)	1028
BstV1I	GCAGC	8 cut(s)	313, 439, 490, 652, 1042, 1051, 1092, 1142
BstV2I	GAAGAC	1 cut(s)	282
BstXI	CCANNNNNNTGG	1 cut(s)	737
BsuRI	GGCC	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	963
BtsCI	GGATG	2 cut(s)	66, 752
BtsIMutI	CAGTG	1 cut(s)	526
BveI	ACCTGC	1 cut(s)	834
Cac8I	GCNNGC	4 cut(s)	331, 846, 1080, 1110
CaiI	CAGNNNCTG	2 cut(s)	808, 1027
CfoI	GCGC	1 cut(s)	574
Cfr10I	RCCGGY	1 cut(s)	381
Cfr13I	GGNCC	2 cut(s)	355, 473
Csp6I	GTAC	1 cut(s)	443
CviAII	CATG	4 cut(s)	55, 359, 652, 964
CviQI	GTAC	1 cut(s)	443
DdeI	CTNAG	6 cut(s)	312, 493, 840, 871, 1013, 1115
DpnI	GATC	4 cut(s)	267, 284, 801, 1008
DpnII	GATC	4 cut(s)	265, 282, 799, 1006
DraI	TTTAAA	1 cut(s)	765
Eam1104I	CTCTTC	3 cut(s)	22, 531, 650
EarI	CTCTTC	3 cut(s)	22, 531, 650
EciI	GGCGGA	2 cut(s)	737, 1019
Ecl136II	GAGCTC	2 cut(s)	15, 601
Eco130I	CCWWGG	1 cut(s)	963
Eco24I	GRGCYC	4 cut(s)	17, 603, 792, 949
Eco32I	GATATC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	473
Eco47III	AGCGCT	1 cut(s)	573
Eco53kI	GAGCTC	2 cut(s)	15, 601
Eco57I	CTGAAG	3 cut(s)	438, 866, 942
Eco88I	CYCGRG	2 cut(s)	401, 1068
EcoICRI	GAGCTC	2 cut(s)	15, 601
EcoRII	CCWGG	1 cut(s)	999
EcoRV	GATATC	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	963
EcoT38I	GRGCYC	4 cut(s)	17, 603, 792, 949
ErhI	CCWWGG	1 cut(s)	963
Esp3I	CGTCTC	1 cut(s)	843
FaeI	CATG	4 cut(s)	58, 362, 655, 967
FatI	CATG	4 cut(s)	54, 358, 651, 963
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	8 cut(s)	327, 428, 504, 666, 1031, 1065, 1106, 1131
FokI	GGATG	2 cut(s)	73, 739
FriOI	GRGCYC	4 cut(s)	17, 603, 792, 949
Fsp4HI	GCNGC	8 cut(s)	327, 428, 504, 666, 1031, 1065, 1106, 1131
FspBI	CTAG	7 cut(s)	129, 180, 423, 462, 470, 533, 1085
GlaI	GCGC	1 cut(s)	573
GluI	GCNGC	8 cut(s)	327, 428, 504, 666, 1031, 1065, 1106, 1131
GsaI	CCCAGC	1 cut(s)	483
HaeII	RGCGCY	1 cut(s)	575
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	2 cut(s)	280, 382
HhaI	GCGC	1 cut(s)	574
Hin1II	CATG	4 cut(s)	58, 362, 655, 967
Hin6I	GCGC	1 cut(s)	572
HinP1I	GCGC	1 cut(s)	572
HinfI	GANTC	5 cut(s)	97, 562, 929, 937, 970
HpaII	CCGG	2 cut(s)	280, 382
HphI	GGTGA	1 cut(s)	602
Hpy166II	GTNNAC	2 cut(s)	997, 1139
Hpy188I	TCNGA	9 cut(s)	50, 112, 138, 150, 315, 457, 757, 915, 1014
Hpy188III	TCNNGA	4 cut(s)	239, 269, 688, 696
Hpy8I	GTNNAC	2 cut(s)	997, 1139
Hpy99I	CGWCG	1 cut(s)	256
HpyAV	CCTTC	1 cut(s)	346
HpyCH4III	ACNGT	5 cut(s)	81, 252, 369, 810, 834
HpyCH4IV	ACGT	1 cut(s)	783
HpyCH4V	TGCA	4 cut(s)	506, 668, 829, 1030
HpyF10VI	GCNNNNNNNGC	7 cut(s)	538, 578, 665, 671, 826, 854, 953
HpyF3I	CTNAG	6 cut(s)	312, 493, 840, 871, 1013, 1115
HpySE526I	ACGT	1 cut(s)	783
Hsp92II	CATG	4 cut(s)	58, 362, 655, 967
HspAI	GCGC	1 cut(s)	572
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	4 cut(s)	265, 282, 799, 1006
LguI	GCTCTTC	2 cut(s)	22, 531
LmnI	GCTCC	2 cut(s)	579, 952
Lsp1109I	GCAGC	8 cut(s)	313, 439, 490, 652, 1042, 1051, 1092, 1142
LweI	GCATC	3 cut(s)	166, 652, 765
MaeI	CTAG	7 cut(s)	129, 180, 423, 462, 470, 533, 1085
MaeII	ACGT	1 cut(s)	783
MaeIII	GTNAC	3 cut(s)	393, 590, 821
MalI	GATC	4 cut(s)	267, 284, 801, 1008
MboI	GATC	4 cut(s)	265, 282, 799, 1006
MhlI	GDGCHC	5 cut(s)	17, 603, 792, 949, 1114
MluCI	AATT	3 cut(s)	211, 448, 909
MlyI	GAGTC	2 cut(s)	106, 938
MmeI	TCCRAC	1 cut(s)	792
MnlI	CCTC	6 cut(s)	163, 734, 808, 844, 847, 1064
MroXI	GAANNNNTTC	1 cut(s)	72
MseI	TTAA	2 cut(s)	764, 794
MslI	CAYNNNNRTG	2 cut(s)	59, 588
MspA1I	CMGCKG	1 cut(s)	479
MspI	CCGG	2 cut(s)	280, 382
MspR9I	CCNGG	1 cut(s)	1001
MvaI	CCWGG	1 cut(s)	1001
MwoI	GCNNNNNNNGC	7 cut(s)	538, 578, 665, 671, 826, 854, 953
NcoI	CCATGG	1 cut(s)	963
NdeII	GATC	4 cut(s)	265, 282, 799, 1006
NlaIII	CATG	4 cut(s)	58, 362, 655, 967
NlaIV	GGNNCC	1 cut(s)	948
NmuCI	GTSAC	2 cut(s)	393, 590
NspV	TTCGAA	1 cut(s)	565
PaeR7I	CTCGAG	2 cut(s)	401, 1068
PciSI	GCTCTTC	2 cut(s)	22, 531
PcsI	WCGNNNNNNNCGW	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	3 cut(s)	562, 937, 970
Pfl23II	CGTACG	1 cut(s)	442
PkrI	GCNGC	8 cut(s)	328, 429, 505, 667, 1032, 1066, 1107, 1132
PleI	GAGTC	2 cut(s)	105, 937
PpsI	GAGTC	2 cut(s)	105, 937
Psp124BI	GAGCTC	2 cut(s)	17, 603
Psp6I	CCWGG	1 cut(s)	999
PspFI	CCCAGC	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	999
PspLI	CGTACG	1 cut(s)	442
PspN4I	GGNNCC	1 cut(s)	948
PspPI	GGNCC	2 cut(s)	355, 473
PspXI	VCTCGAGB	2 cut(s)	401, 1068
PstI	CTGCAG	1 cut(s)	1032
PstNI	CAGNNNCTG	2 cut(s)	808, 1027
PvuII	CAGCTG	1 cut(s)	479
RsaI	GTAC	1 cut(s)	444
RsaNI	GTAC	1 cut(s)	443
RseI	CAYNNNNRTG	2 cut(s)	59, 588
SacI	GAGCTC	2 cut(s)	17, 603
SapI	GCTCTTC	2 cut(s)	22, 531
SaqAI	TTAA	2 cut(s)	764, 794
SatI	GCNGC	8 cut(s)	327, 428, 504, 666, 1031, 1065, 1106, 1131
Sau3AI	GATC	4 cut(s)	265, 282, 799, 1006
Sau96I	GGNCC	2 cut(s)	355, 473
SchI	GAGTC	2 cut(s)	106, 938
ScrFI	CCNGG	1 cut(s)	1001
SduI	GDGCHC	5 cut(s)	17, 603, 792, 949, 1114
SfaNI	GCATC	3 cut(s)	166, 652, 765
SfcI	CTRYAG	1 cut(s)	1028
Sfr274I	CTCGAG	2 cut(s)	401, 1068
SfuI	TTCGAA	1 cut(s)	565
SinI	GGWCC	1 cut(s)	473
SlaI	CTCGAG	2 cut(s)	401, 1068
SmiMI	CAYNNNNRTG	2 cut(s)	59, 588
SmlI	CTYRAG	5 cut(s)	33, 167, 401, 864, 1068
SmoI	CTYRAG	5 cut(s)	33, 167, 401, 864, 1068
SpeI	ACTAGT	2 cut(s)	128, 461
Sse9I	AATT	3 cut(s)	211, 448, 909
SsiI	CCGC	3 cut(s)	649, 748, 1004
SspI	AATATT	1 cut(s)	124
SspMI	CTAG	7 cut(s)	129, 180, 423, 462, 470, 533, 1085
SstI	GAGCTC	2 cut(s)	17, 603
StyD4I	CCNGG	1 cut(s)	999
StyI	CCWWGG	1 cut(s)	963
TaaI	ACNGT	5 cut(s)	81, 252, 369, 810, 834
TaiI	ACGT	1 cut(s)	786
TaqI	TCGA	5 cut(s)	254, 402, 565, 897, 1069
TasI	AATT	3 cut(s)	211, 448, 909
TfiI	GAWTC	3 cut(s)	562, 937, 970
Tru1I	TTAA	2 cut(s)	764, 794
Tru9I	TTAA	2 cut(s)	764, 794
TscAI	CASTG	1 cut(s)	533
TseFI	GTSAC	2 cut(s)	393, 590
TseI	GCWGC	8 cut(s)	326, 427, 503, 665, 1030, 1064, 1105, 1130
Tsp45I	GTSAC	2 cut(s)	393, 590
TspDTI	ATGAA	4 cut(s)	81, 311, 503, 668
TspRI	CASTG	1 cut(s)	533
VpaK11BI	GGWCC	1 cut(s)	473
XhoI	CTCGAG	2 cut(s)	401, 1068
XmnI	GAANNNNTTC	1 cut(s)	72
XspI	CTAG	7 cut(s)	129, 180, 423, 462, 470, 533, 1085

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.