Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7835781 .. 7837411

Gene Structure 1631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G22190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGACAACTTCTATGGATTTTTACAGTAACAAAACGTTTCAACAATCTGATCCATTCGGTGGTGAATTAATGGAAGCGCTTTTACCTTTTATCAAAAGCCCTTCCAACGATTCATCCGCGTTTGCGTTCTCTCTACCCGCTCCAATTTCATACGGGTCGGATCTCCACTCATTTTCTCACCATCTTAGTCCTAAACCGGTCTCAATGAAACAAACCGGTACTTCCGCGGCTAAACCGACGAAGCTATACAGAGGAGTGAGACAACGTCACTGGGGAAAATGGGTGGCTGAGATTCGTTTACCGAGGAATCGAACTCGACTTTGGCTCGGAACATTCGACACGGCGGAGGAAGCTGCTTTAGCTTATGACAAGGCGGCGTATAAGCTCCGAGGAGATTTTGCGCGGCTTAATTTCCCTGATCTCCGTCATAACGACGAGTATCAACCTCTTCAATCATCAGTCGACGCTAAGCTTGAAGCTATTTGTCAAAACTTAGCTGAGACGACGCAGAAACAGGTGAGATCAACGAAGAAGTCTTCTTCTCGGAAACGTTCATCAACCGTCGCAGTGAAACTACCGGAGGAGGACTACTCTAGCGCCGGATCTTCGCCGCTGTTAACGGAGAGTTATGGATCTGGTGGATCTTCTTCGCCGTTGTCGGAGCTGACGTTTGGTGATACGGAGGAGGAGATTCAGCCGCCGTGGAACGAGAACGCGTTGGAGAAGTATCCGTCGTACGAGATCGATTGGGATTCGATTCTTCAGTGTTCGAGTCTTGTAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033554 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045595 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071369 GO:0071470 GO:0071472 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

261

Amino Acids

29.14

Weight (kDa)

6.0

Isoelectric Point (pI)

63.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	82 - 131	2.5e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	59
AccBSI	CCGCTC	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	462
AccII	CGCG	4 cut(s)	119, 227, 403, 716
AciI	CCGC	9 cut(s)	117, 138, 225, 227, 344, 374, 403, 611, 698
AclI	AACGTT	2 cut(s)	35, 550
AclWI	GGATC	5 cut(s)	44, 168, 610, 640, 649
AcuI	CTGAAG	1 cut(s)	746
AfaI	GTAC	2 cut(s)	220, 737
AfeI	AGCGCT	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	59
AflIII	ACRYGT	1 cut(s)	714
AgeI	ACCGGT	2 cut(s)	196, 215
AgsI	TTSAA	3 cut(s)	41, 452, 476
AjuI	GAANNNNNNNTTGG	2 cut(s)	304, 336
AluBI	AGCT	8 cut(s)	244, 353, 362, 385, 472, 479, 497, 664
AluI	AGCT	8 cut(s)	244, 353, 362, 385, 472, 479, 497, 664
Alw26I	GTCTC	3 cut(s)	205, 253, 494
AlwI	GGATC	5 cut(s)	44, 168, 610, 640, 649
Aor51HI	AGCGCT	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	353
AseI	ATTAAT	1 cut(s)	68
AsiGI	ACCGGT	2 cut(s)	196, 215
AspLEI	GCGC	3 cut(s)	79, 403, 599
AsuHPI	GGTGA	4 cut(s)	74, 170, 529, 686
BarI	GAAGNNNNNNTAC	2 cut(s)	66, 98
BbsI	GAAGAC	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	1 cut(s)	189
BceAI	ACGGC	3 cut(s)	357, 637, 685
BciVI	GTATCC	1 cut(s)	738
BcoDI	GTCTC	3 cut(s)	205, 253, 494
BfaI	CTAG	1 cut(s)	594
BfoI	RGCGCY	2 cut(s)	80, 600
BfuI	GTATCC	1 cut(s)	738
BisI	GCNGC	6 cut(s)	228, 354, 375, 404, 611, 698
BlpI	GCTNAGC	1 cut(s)	468
BlsI	GCNGC	6 cut(s)	229, 355, 376, 405, 612, 699
BmrI	ACTGGG	1 cut(s)	280
BmuI	ACTGGG	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	528
BplI	GAGNNNNNCTC	2 cut(s)	575, 607
Bpu1102I	GCTNAGC	1 cut(s)	468
Bsa29I	ATCGAT	1 cut(s)	744
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	4 cut(s)	225, 302, 388, 701
BsaWI	WCCGGW	3 cut(s)	196, 215, 577
BsaXI	ACNNNNNCTCC	2 cut(s)	653, 683
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse118I	RCCGGY	2 cut(s)	196, 215
Bse1I	ACTGG	1 cut(s)	275
BseCI	ATCGAT	1 cut(s)	744
BseDI	CCNNGG	4 cut(s)	225, 302, 388, 701
BseGI	GGATG	1 cut(s)	113
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	2 cut(s)	279, 489
BseNI	ACTGG	1 cut(s)	275
BseRI	GAGGAG	5 cut(s)	267, 405, 596, 698, 701
BseXI	GCAGC	1 cut(s)	340
Bsh1236I	CGCG	4 cut(s)	119, 227, 403, 716
BshTI	ACCGGT	2 cut(s)	196, 215
BshVI	ATCGAT	1 cut(s)	744
BsiSI	CCGG	4 cut(s)	197, 216, 578, 600
BsiWI	CGTACG	1 cut(s)	735
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	3 cut(s)	205, 253, 494
BsmBI	CGTCTC	1 cut(s)	494
Bso31I	GGTCTC	1 cut(s)	205
Bsp143I	GATC	8 cut(s)	49, 160, 418, 521, 602, 632, 641, 741
Bsp1720I	GCTNAGC	1 cut(s)	468
BspACI	CCGC	9 cut(s)	117, 138, 225, 227, 344, 374, 403, 611, 698
BspCNI	CTCAG	2 cut(s)	280, 490
BspDI	ATCGAT	1 cut(s)	744
BspFNI	CGCG	4 cut(s)	119, 227, 403, 716
BspPI	GGATC	5 cut(s)	44, 168, 610, 640, 649
BspTNI	GGTCTC	1 cut(s)	205
BsrBI	CCGCTC	1 cut(s)	140
BsrFI	RCCGGY	2 cut(s)	196, 215
BsrI	ACTGG	1 cut(s)	275
BssAI	RCCGGY	2 cut(s)	196, 215
BssECI	CCNNGG	4 cut(s)	225, 302, 388, 701
BssMI	GATC	8 cut(s)	49, 160, 418, 521, 602, 632, 641, 741
Bst4CI	ACNGT	2 cut(s)	26, 562
Bst6I	CTCTTC	1 cut(s)	453
BstDEI	CTNAG	5 cut(s)	185, 288, 468, 493, 498
BstDSI	CCRYGG	2 cut(s)	225, 701
BstF5I	GGATG	1 cut(s)	113
BstFNI	CGCG	4 cut(s)	119, 227, 403, 716
BstH2I	RGCGCY	2 cut(s)	80, 600
BstHHI	GCGC	3 cut(s)	79, 403, 599
BstKTI	GATC	8 cut(s)	52, 163, 421, 524, 605, 635, 644, 744
BstMAI	GTCTC	3 cut(s)	205, 253, 494
BstMBI	GATC	8 cut(s)	49, 160, 418, 521, 602, 632, 641, 741
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 359
BstUI	CGCG	4 cut(s)	119, 227, 403, 716
BstV1I	GCAGC	1 cut(s)	340
BstV2I	GAAGAC	1 cut(s)	528
BstX2I	RGATCY	4 cut(s)	160, 602, 632, 641
BstYI	RGATCY	4 cut(s)	160, 602, 632, 641
Bsu15I	ATCGAT	1 cut(s)	744
BsuI	GTATCC	1 cut(s)	738
BsuTUI	ATCGAT	1 cut(s)	744
BtgI	CCRYGG	2 cut(s)	225, 701
BtsCI	GGATG	1 cut(s)	113
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	3 cut(s)	268, 573, 770
CfoI	GCGC	3 cut(s)	79, 403, 599
Cfr10I	RCCGGY	2 cut(s)	196, 215
Cfr42I	CCGCGG	1 cut(s)	228
ClaI	ATCGAT	1 cut(s)	744
CseI	GACGC	2 cut(s)	473, 514
Csp6I	GTAC	2 cut(s)	219, 736
CspAI	ACCGGT	2 cut(s)	196, 215
CviQI	GTAC	2 cut(s)	219, 736
DdeI	CTNAG	5 cut(s)	185, 288, 468, 493, 498
DpnI	GATC	8 cut(s)	51, 162, 420, 523, 604, 634, 643, 743
DpnII	GATC	8 cut(s)	49, 160, 418, 521, 602, 632, 641, 741
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
EciI	GGCGGA	1 cut(s)	359
Eco31I	GGTCTC	1 cut(s)	205
Eco47III	AGCGCT	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	746
Esp3I	CGTCTC	1 cut(s)	494
FaiI	YATR	7 cut(s)	14, 151, 247, 366, 381, 429, 630
FauI	CCCGC	1 cut(s)	145
FblI	GTMKAC	1 cut(s)	462
Fnu4HI	GCNGC	6 cut(s)	228, 354, 375, 404, 611, 698
FokI	GGATG	1 cut(s)	100
Fsp4HI	GCNGC	6 cut(s)	228, 354, 375, 404, 611, 698
FspBI	CTAG	1 cut(s)	594
GlaI	GCGC	3 cut(s)	78, 402, 598
GluI	GCNGC	6 cut(s)	228, 354, 375, 404, 611, 698
HaeII	RGCGCY	2 cut(s)	80, 600
HapII	CCGG	4 cut(s)	197, 216, 578, 600
HgaI	GACGC	2 cut(s)	473, 514
HhaI	GCGC	3 cut(s)	79, 403, 599
Hin6I	GCGC	3 cut(s)	77, 401, 597
HinP1I	GCGC	3 cut(s)	77, 401, 597
HincII	GTYRAC	2 cut(s)	463, 618
HindII	GTYRAC	2 cut(s)	463, 618
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	7 cut(s)	110, 292, 307, 691, 752, 757, 772
HpaI	GTTAAC	1 cut(s)	618
HpaII	CCGG	4 cut(s)	197, 216, 578, 600
HphI	GGTGA	4 cut(s)	74, 170, 529, 686
Hpy166II	GTNNAC	3 cut(s)	299, 463, 618
Hpy188I	TCNGA	6 cut(s)	49, 160, 329, 389, 546, 661
Hpy8I	GTNNAC	3 cut(s)	299, 463, 618
Hpy99I	CGWCG	6 cut(s)	241, 437, 467, 508, 566, 736
HpyAV	CCTTC	1 cut(s)	111
HpyCH4III	ACNGT	2 cut(s)	26, 562
HpyCH4IV	ACGT	4 cut(s)	35, 265, 550, 668
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 359
HpyF3I	CTNAG	5 cut(s)	185, 288, 468, 493, 498
HpySE526I	ACGT	4 cut(s)	35, 265, 550, 668
HspAI	GCGC	3 cut(s)	77, 401, 597
KspAI	GTTAAC	1 cut(s)	618
KspI	CCGCGG	1 cut(s)	228
Kzo9I	GATC	8 cut(s)	49, 160, 418, 521, 602, 632, 641, 741
LmnI	GCTCC	3 cut(s)	145, 390, 661
LpnPI	CCDG	8 cut(s)	210, 229, 256, 429, 500, 591, 613, 621
Lsp1109I	GCAGC	1 cut(s)	340
MaeI	CTAG	1 cut(s)	594
MaeII	ACGT	4 cut(s)	35, 265, 550, 668
MaeIII	GTNAC	2 cut(s)	26, 266
MalI	GATC	8 cut(s)	51, 162, 420, 523, 604, 634, 643, 743
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	8 cut(s)	49, 160, 418, 521, 602, 632, 641, 741
MboII	GAAGA	8 cut(s)	440, 528, 531, 541, 597, 636, 639, 752
MflI	RGATCY	4 cut(s)	160, 602, 632, 641
MluCI	AATT	4 cut(s)	65, 144, 409, 781
MluI	ACGCGT	1 cut(s)	714
MlyI	GAGTC	1 cut(s)	781
MmeI	TCCRAC	4 cut(s)	129, 138, 639, 699
MnlI	CCTC	9 cut(s)	245, 297, 340, 383, 456, 574, 577, 676, 679
MseI	TTAA	3 cut(s)	68, 408, 617
MspA1I	CMGCKG	2 cut(s)	227, 613
MspI	CCGG	4 cut(s)	197, 216, 578, 600
MvnI	CGCG	4 cut(s)	119, 227, 403, 716
MwoI	GCNNNNNNNGC	2 cut(s)	350, 359
NdeII	GATC	8 cut(s)	49, 160, 418, 521, 602, 632, 641, 741
NmuCI	GTSAC	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	2 cut(s)	333, 665
PfeI	GAWTC	6 cut(s)	110, 292, 307, 691, 752, 757
Pfl23II	CGTACG	1 cut(s)	735
PflFI	GACNNNGTC	1 cut(s)	264
PflMI	CCANNNNNTGG	1 cut(s)	59
PinAI	ACCGGT	2 cut(s)	196, 215
PkrI	GCNGC	6 cut(s)	229, 355, 376, 405, 612, 699
PleI	GAGTC	1 cut(s)	780
PpsI	GAGTC	1 cut(s)	780
PshBI	ATTAAT	1 cut(s)	68
Psp1406I	AACGTT	2 cut(s)	35, 550
PspLI	CGTACG	1 cut(s)	735
PsuI	RGATCY	4 cut(s)	160, 602, 632, 641
PsyI	GACNNNGTC	1 cut(s)	264
RsaI	GTAC	2 cut(s)	220, 737
RsaNI	GTAC	2 cut(s)	219, 736
SacII	CCGCGG	1 cut(s)	228
SalI	GTCGAC	1 cut(s)	461
SaqAI	TTAA	3 cut(s)	68, 408, 617
SatI	GCNGC	6 cut(s)	228, 354, 375, 404, 611, 698
Sau3AI	GATC	8 cut(s)	49, 160, 418, 521, 602, 632, 641, 741
SchI	GAGTC	1 cut(s)	781
Sfr303I	CCGCGG	1 cut(s)	228
SgrBI	CCGCGG	1 cut(s)	228
Sse9I	AATT	4 cut(s)	65, 144, 409, 781
SsiI	CCGC	9 cut(s)	117, 138, 225, 227, 344, 374, 403, 611, 698
SspMI	CTAG	1 cut(s)	594
TaaI	ACNGT	2 cut(s)	26, 562
TaiI	ACGT	4 cut(s)	38, 268, 553, 671
TaqI	TCGA	7 cut(s)	310, 316, 336, 462, 744, 755, 770
TasI	AATT	4 cut(s)	65, 144, 409, 781
TauI	GCSGC	5 cut(s)	230, 377, 406, 613, 700
TfiI	GAWTC	6 cut(s)	110, 292, 307, 691, 752, 757
Tru1I	TTAA	3 cut(s)	68, 408, 617
Tru9I	TTAA	3 cut(s)	68, 408, 617
TscAI	CASTG	3 cut(s)	275, 573, 770
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	4 cut(s)	102, 138, 221, 543
TspGWI	ACGGA	4 cut(s)	413, 635, 695, 720
TspRI	CASTG	3 cut(s)	275, 573, 770
Tth111I	GACNNNGTC	1 cut(s)	264
Van91I	CCANNNNNTGG	1 cut(s)	59
VspI	ATTAAT	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	462
XspI	CTAG	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.