Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

8714365 .. 8715378

Gene Structure 1014 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G24590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGAAGAAGCAATCATGAGACTCGAAGGTGCCGAGCACAGAGAAACCAACATCCATTCTTTGAAAAGAAAGCCATCAAGAACTTCCTCGACAGCTCCTGGCTCTCCCGGAGGAGTAACTACCGCAAAAGCTGCCTCCGGCGCCGGCGCTTCCGGTGTCTCTACGATAAGGTACCGAGGCGTGAGGCGTAGGCCATGGGGTCGTTACGCAGCTGAAATACGGGACCCATTGTCCAAGGAGAGACGATGGCTCGGAACATTTGACACGGCCGAGGAAGCAGCTTGCGCATATGACTGCGCCGCTCGAGCCATGCGTGGTCTTAAAGCTCGAACCAACTTCGTCTACCCAATGCCTTCTCTCGACTCTTATCACCACCGTATTTTCTCGTCTCCTCCAATGAATATGTTCCTTCTACGAGACGTGTTAAACTCTCAGTCTCTTTCTCCGTTAACCACTTTCGCTTACCCGCCTTGTAATCTTTCTAACGTAAACGACGTTGTTCACGAGTCCTTCACTAACGTCAACGATGTCTGTGAAGATCTCTCGCCTAAAGCTAAGAGGTCAAGTACCATTGAGAACGAGAGCCTGATATCAAATATCTTTGAACCAGAACCAGCTAGTTCTGGTCTTCTTCAAGAAATTGTTCAAGGCTTCTTACCAAAACCTATCTCTCAACATGCTTCTATACCTCCAAAGAGCAACCAACAGTCGGTTGGTGTTTTCCCGACGATGCCAGAGAGCGGTTTTCAGACAGATGTTCGTTTAGCTGACTTCCATGTCGAAGGAAACGGATTCGGTCAGGTTAAATATCATGGAGAGTTAGGTTGGGCTGATCATGAGAATGGGTTTGATTCAGCTAAGATGCAGCAGAACGGAAATGGTGGAATGTTTTATCAGTATTGCTTTCATGATGATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009880 GO:0009889 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

306

Amino Acids

33.83

Weight (kDa)

6.37

Isoelectric Point (pI)

56.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	57 - 106	2.2e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	776
Acc16I	TGCGCA	1 cut(s)	286
Acc65I	GGTACC	1 cut(s)	171
AccB1I	GGYRCC	3 cut(s)	29, 140, 171
AccBSI	CCGCTC	2 cut(s)	302, 741
AccI	GTMKAC	1 cut(s)	342
AciI	CCGC	4 cut(s)	123, 300, 467, 741
AcoI	YGGCCR	1 cut(s)	267
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	2 cut(s)	173, 568
AfiI	CCNNNNNNNGG	2 cut(s)	709, 740
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	4 cut(s)	64, 605, 635, 647
AhdI	GACNNNNNGTC	1 cut(s)	229
AjiI	CACGTC	1 cut(s)	421
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	9 cut(s)	95, 131, 212, 281, 326, 554, 617, 767, 857
AluI	AGCT	9 cut(s)	95, 131, 212, 281, 326, 554, 617, 767, 857
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	6 cut(s)	13, 163, 235, 393, 411, 441
AlwNI	CAGNNNCTG	1 cut(s)	98
Ama87I	CYCGRG	1 cut(s)	303
AoxI	GGCC	2 cut(s)	191, 267
ApeKI	GCWGC	4 cut(s)	131, 209, 278, 865
Asp700I	GAANNNNTTC	2 cut(s)	404, 642
Asp718I	GGTACC	1 cut(s)	171
AspLEI	GCGC	4 cut(s)	143, 149, 287, 299
AspS9I	GGNCC	1 cut(s)	223
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	362
AvaI	CYCGRG	1 cut(s)	303
AvaII	GGWCC	1 cut(s)	223
BanI	GGYRCC	3 cut(s)	29, 140, 171
BauI	CACGAG	1 cut(s)	503
BbsI	GAAGAC	1 cut(s)	620
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	4 cut(s)	118, 221, 290, 877
BccI	CCATC	2 cut(s)	82, 240
BceAI	ACGGC	1 cut(s)	282
BciT130I	CCWGG	1 cut(s)	99
BclI	TGATCA	1 cut(s)	832
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	6 cut(s)	13, 163, 235, 393, 411, 441
BfaI	CTAG	1 cut(s)	618
BfoI	RGCGCY	2 cut(s)	144, 150
BglII	AGATCT	1 cut(s)	538
BisI	GCNGC	5 cut(s)	132, 210, 279, 300, 866
BlsI	GCNGC	5 cut(s)	133, 211, 280, 301, 867
Bme1390I	CCNGG	2 cut(s)	99, 108
Bme18I	GGWCC	1 cut(s)	223
BmeRI	GACNNNNNGTC	1 cut(s)	229
BmeT110I	CYCGRG	1 cut(s)	303
BmgBI	CACGTC	1 cut(s)	421
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	5 cut(s)	31, 142, 173, 224, 225
BmrFI	CCNGG	2 cut(s)	99, 108
BmsI	GCATC	2 cut(s)	720, 852
BpiI	GAAGAC	1 cut(s)	620
BpuMI	CCSGG	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	4 cut(s)	175, 194, 234, 270
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	2 cut(s)	709, 740
Bse118I	RCCGGY	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	4 cut(s)	175, 194, 234, 270
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	2 cut(s)	709, 740
BseMII	CTCAG	1 cut(s)	446
BseRI	GAGGAG	2 cut(s)	126, 381
BseX3I	CGGCCG	1 cut(s)	267
BseXI	GCAGC	4 cut(s)	118, 221, 290, 877
Bsh1285I	CGRYCG	1 cut(s)	270
BshFI	GGCC	2 cut(s)	193, 269
BshNI	GGYRCC	3 cut(s)	29, 140, 171
BsiEI	CGRYCG	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	39
BsiHKCI	CYCGRG	1 cut(s)	303
BsiSI	CCGG	4 cut(s)	108, 138, 144, 153
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	709, 740
BsmAI	GTCTC	6 cut(s)	13, 163, 235, 393, 411, 441
BsmBI	CGTCTC	3 cut(s)	235, 393, 411
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	2 cut(s)	193, 269
BsoBI	CYCGRG	1 cut(s)	303
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	538, 832
Bsp19I	CCATGG	1 cut(s)	194
BspACI	CCGC	4 cut(s)	123, 300, 467, 741
BspANI	GGCC	2 cut(s)	193, 269
BspCNI	CTCAG	1 cut(s)	445
BspHI	TCATGA	3 cut(s)	15, 835, 907
BspLI	GGNNCC	5 cut(s)	31, 142, 173, 224, 225
BspT107I	GGYRCC	3 cut(s)	29, 140, 171
BsrBI	CCGCTC	2 cut(s)	302, 741
BsrFI	RCCGGY	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	4 cut(s)	175, 194, 234, 270
BssMI	GATC	2 cut(s)	538, 832
BssNI	GRCGYC	1 cut(s)	141
BssSI	CACGAG	1 cut(s)	503
BssT1I	CCWWGG	2 cut(s)	194, 234
Bst2BI	CACGAG	1 cut(s)	503
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	2 cut(s)	377, 708
BstACI	GRCGYC	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	2 cut(s)	145, 283
BstDEI	CTNAG	3 cut(s)	432, 555, 858
BstDSI	CCRYGG	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	51
BstH2I	RGCGCY	2 cut(s)	144, 150
BstHHI	GCGC	4 cut(s)	143, 149, 287, 299
BstKTI	GATC	2 cut(s)	541, 835
BstMAI	GTCTC	6 cut(s)	13, 163, 235, 393, 411, 441
BstMBI	GATC	2 cut(s)	538, 832
BstMCI	CGRYCG	1 cut(s)	270
BstMWI	GCNNNNNNNGC	5 cut(s)	131, 140, 275, 284, 305
BstNI	CCWGG	1 cut(s)	99
BstNSI	RCATGY	1 cut(s)	680
BstSCI	CCNGG	2 cut(s)	97, 106
BstV1I	GCAGC	4 cut(s)	118, 221, 290, 877
BstV2I	GAAGAC	1 cut(s)	620
BstX2I	RGATCY	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	538
BstZI	CGGCCG	1 cut(s)	267
BsuRI	GGCC	2 cut(s)	193, 269
BtgI	CCRYGG	1 cut(s)	194
BtrI	CACGTC	1 cut(s)	421
BtsCI	GGATG	1 cut(s)	51
Cac8I	GCNNGC	2 cut(s)	145, 283
CaiI	CAGNNNCTG	1 cut(s)	98
CciI	TCATGA	3 cut(s)	15, 835, 907
CfoI	GCGC	4 cut(s)	143, 149, 287, 299
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	223
Csp6I	GTAC	2 cut(s)	172, 567
CviAII	CATG	8 cut(s)	16, 195, 310, 677, 776, 812, 836, 908
CviQI	GTAC	2 cut(s)	172, 567
DdeI	CTNAG	3 cut(s)	432, 555, 858
DinI	GGCGCC	1 cut(s)	142
DpnI	GATC	2 cut(s)	540, 834
DpnII	GATC	2 cut(s)	538, 832
DrdI	GACNNNNNNGTC	1 cut(s)	776
DriI	GACNNNNNGTC	1 cut(s)	229
DseDI	GACNNNNNNGTC	1 cut(s)	776
EaeI	YGGCCR	1 cut(s)	267
EagI	CGGCCG	1 cut(s)	267
Eam1105I	GACNNNNNGTC	1 cut(s)	229
EclXI	CGGCCG	1 cut(s)	267
Eco130I	CCWWGG	2 cut(s)	194, 234
Eco32I	GATATC	1 cut(s)	591
Eco47I	GGWCC	1 cut(s)	223
Eco52I	CGGCCG	1 cut(s)	267
Eco88I	CYCGRG	1 cut(s)	303
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	97
EcoRV	GATATC	1 cut(s)	591
EcoT14I	CCWWGG	2 cut(s)	194, 234
EgeI	GGCGCC	1 cut(s)	142
EheI	GGCGCC	1 cut(s)	142
ErhI	CCWWGG	2 cut(s)	194, 234
Esp3I	CGTCTC	3 cut(s)	235, 393, 411
FaeI	CATG	8 cut(s)	19, 198, 313, 680, 779, 815, 839, 911
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	8 cut(s)	15, 194, 309, 676, 775, 811, 835, 907
FauI	CCCGC	1 cut(s)	474
FauNDI	CATATG	1 cut(s)	289
FbaI	TGATCA	1 cut(s)	832
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	5 cut(s)	132, 210, 279, 300, 866
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	5 cut(s)	132, 210, 279, 300, 866
FspBI	CTAG	1 cut(s)	618
FspI	TGCGCA	1 cut(s)	286
GlaI	GCGC	4 cut(s)	142, 148, 286, 298
GluI	GCNGC	5 cut(s)	132, 210, 279, 300, 866
HaeII	RGCGCY	2 cut(s)	144, 150
HaeIII	GGCC	2 cut(s)	193, 269
HapII	CCGG	4 cut(s)	108, 138, 144, 153
HhaI	GCGC	4 cut(s)	143, 149, 287, 299
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	8 cut(s)	19, 198, 313, 680, 779, 815, 839, 911
Hin6I	GCGC	4 cut(s)	141, 147, 285, 297
HinP1I	GCGC	4 cut(s)	141, 147, 285, 297
HincII	GTYRAC	2 cut(s)	450, 523
HindII	GTYRAC	2 cut(s)	450, 523
HinfI	GANTC	5 cut(s)	21, 362, 506, 792, 851
HpaI	GTTAAC	1 cut(s)	450
HpaII	CCGG	4 cut(s)	108, 138, 144, 153
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	5 cut(s)	343, 450, 490, 502, 523
Hpy188I	TCNGA	2 cut(s)	254, 750
Hpy188III	TCNNGA	8 cut(s)	16, 78, 359, 503, 635, 724, 836, 908
Hpy8I	GTNNAC	5 cut(s)	343, 450, 490, 502, 523
Hpy99I	CGWCG	2 cut(s)	497, 730
HpyAV	CCTTC	5 cut(s)	20, 363, 419, 520, 776
HpyCH4III	ACNGT	2 cut(s)	377, 708
HpyCH4IV	ACGT	4 cut(s)	420, 486, 495, 519
HpyCH4V	TGCA	1 cut(s)	865
HpyF10VI	GCNNNNNNNGC	5 cut(s)	131, 140, 275, 284, 305
HpyF3I	CTNAG	3 cut(s)	432, 555, 858
HpySE526I	ACGT	4 cut(s)	420, 486, 495, 519
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	8 cut(s)	19, 198, 313, 680, 779, 815, 839, 911
HspAI	GCGC	4 cut(s)	141, 147, 285, 297
KasI	GGCGCC	1 cut(s)	140
KflI	GGGWCCC	1 cut(s)	223
KpnI	GGTACC	1 cut(s)	175
KroI	GCCGGC	1 cut(s)	143
KroNI	GCCGGC	1 cut(s)	145
Ksp22I	TGATCA	1 cut(s)	832
KspAI	GTTAAC	1 cut(s)	450
Kzo9I	GATC	2 cut(s)	538, 832
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	4 cut(s)	118, 221, 290, 877
LweI	GCATC	2 cut(s)	720, 852
MaeI	CTAG	1 cut(s)	618
MaeII	ACGT	4 cut(s)	420, 486, 495, 519
MaeIII	GTNAC	2 cut(s)	115, 203
MalI	GATC	2 cut(s)	540, 834
MbiI	CCGCTC	2 cut(s)	302, 741
MboI	GATC	2 cut(s)	538, 832
MboII	GAAGA	4 cut(s)	17, 548, 620, 623
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	1 cut(s)	639
Mly113I	GGCGCC	1 cut(s)	141
MlyI	GAGTC	3 cut(s)	15, 356, 515
MnlI	CCTC	9 cut(s)	97, 104, 145, 170, 177, 265, 402, 552, 699
MreI	CGCCGGCG	1 cut(s)	143
MroNI	GCCGGC	1 cut(s)	143
MroXI	GAANNNNTTC	2 cut(s)	404, 642
MseI	TTAA	4 cut(s)	321, 425, 449, 804
MslI	CAYNNNNRTG	1 cut(s)	840
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	4 cut(s)	108, 138, 144, 153
MspR9I	CCNGG	2 cut(s)	99, 108
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	5 cut(s)	131, 140, 275, 284, 305
NaeI	GCCGGC	1 cut(s)	145
NarI	GGCGCC	1 cut(s)	141
NciI	CCSGG	1 cut(s)	108
NcoI	CCATGG	1 cut(s)	194
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	2 cut(s)	538, 832
NgoMIV	GCCGGC	1 cut(s)	143
NlaIII	CATG	8 cut(s)	19, 198, 313, 680, 779, 815, 839, 911
NlaIV	GGNNCC	5 cut(s)	31, 142, 173, 224, 225
NmeAIII	GCCGAG	2 cut(s)	58, 295
NsbI	TGCGCA	1 cut(s)	286
NspI	RCATGY	1 cut(s)	680
PaeR7I	CTCGAG	1 cut(s)	303
PagI	TCATGA	3 cut(s)	15, 835, 907
PcsI	WCGNNNNNNNCGW	4 cut(s)	30, 310, 492, 501
PdiI	GCCGGC	1 cut(s)	145
PdmI	GAANNNNTTC	2 cut(s)	404, 642
PfeI	GAWTC	2 cut(s)	792, 851
PfoI	TCCNGGA	1 cut(s)	106
PkrI	GCNGC	5 cut(s)	133, 211, 280, 301, 867
PleI	GAGTC	3 cut(s)	15, 356, 514
PluTI	GGCGCC	1 cut(s)	144
PpsI	GAGTC	3 cut(s)	15, 356, 514
PpuMI	RGGWCCY	1 cut(s)	223
Psp5II	RGGWCCY	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	5 cut(s)	31, 142, 173, 224, 225
PspPI	GGNCC	1 cut(s)	223
PspPPI	RGGWCCY	1 cut(s)	223
PspXI	VCTCGAGB	1 cut(s)	303
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	538
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	2 cut(s)	173, 568
RsaNI	GTAC	2 cut(s)	172, 567
RseI	CAYNNNNRTG	1 cut(s)	840
SaqAI	TTAA	4 cut(s)	321, 425, 449, 804
SatI	GCNGC	5 cut(s)	132, 210, 279, 300, 866
Sau3AI	GATC	2 cut(s)	538, 832
Sau96I	GGNCC	1 cut(s)	223
SchI	GAGTC	3 cut(s)	15, 356, 515
ScrFI	CCNGG	2 cut(s)	99, 108
SduI	GDGCHC	1 cut(s)	39
SfaNI	GCATC	2 cut(s)	720, 852
SfoI	GGCGCC	1 cut(s)	142
Sfr274I	CTCGAG	1 cut(s)	303
SgrAI	CRCCGGYG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	223
SlaI	CTCGAG	1 cut(s)	303
SmiMI	CAYNNNNRTG	1 cut(s)	840
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
Sse9I	AATT	1 cut(s)	639
SsiI	CCGC	4 cut(s)	123, 300, 467, 741
SspDI	GGCGCC	1 cut(s)	140
SspMI	CTAG	1 cut(s)	618
StyD4I	CCNGG	2 cut(s)	97, 106
StyI	CCWWGG	2 cut(s)	194, 234
TaaI	ACNGT	2 cut(s)	377, 708
TaiI	ACGT	4 cut(s)	423, 489, 498, 522
TaqI	TCGA	6 cut(s)	24, 89, 304, 328, 360, 780
TaqII	GACCGA	1 cut(s)	785
TasI	AATT	1 cut(s)	639
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	2 cut(s)	792, 851
Tru1I	TTAA	4 cut(s)	321, 425, 449, 804
Tru9I	TTAA	4 cut(s)	321, 425, 449, 804
TseI	GCWGC	4 cut(s)	131, 209, 278, 865
TspDTI	ATGAA	2 cut(s)	413, 896
TspGWI	ACGGA	3 cut(s)	435, 804, 888
VpaK11BI	GGWCC	1 cut(s)	223
XceI	RCATGY	1 cut(s)	680
XcmI	CCANNNNNNNNNTGG	1 cut(s)	710
XhoI	CTCGAG	1 cut(s)	303
XmiI	GTMKAC	1 cut(s)	342
XmnI	GAANNNNTTC	2 cut(s)	404, 642
XspI	CTAG	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.