AT1G25320

Leucine-rich repeat

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
N/A
Physical Location & Seq
Forward (+)
8877790 .. 8880388
2599 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G25320.1

Sequence Viewer

Length: 2109 bp
ATGTCGGTGGGATCTCTTTTATTCATGTTTCTTCTTATCTGGAACTTCAATGGCGAATTGAATGCTCTAAACGACGAAGGGTTTGCTCTTTTAACTCTGAAGCAGTCTATTTCAAAAGATCCAGATGGTTCTTTAAGCAATTGGAACTCAGAGAATCAAAACCCTTGTTCTTGGAATGGAGTCACTTGTGATGATAACAAGGTTGTTGTCTCTCTTAGCATCCCAAAGAAGAAACTTTTAGGTTATCTTCCTTCTTCTCTTGGTTTACTCTCTAATCTCCGTCATTTGAATTTGAGAAGCAATGAGCTTAGTGGGAACTTACCTGTTGAGCTTTTTAAGGCTCAAGGTCTTCAAAGTTTGGTTCTTTATGGGAATTTCTTGTCTGGGTCCATTCCAAATGAGATTGGTGACTTAAAGTTTCTGCAAATTTTGGATCTTTCTCGTAATTCTCTTAATGGGTCTATTCCAGAATCGGTTTTGAAGTGTAATAGGCTTAGGAGCTTTGATTTGAGTCAGAATAATCTCACTGGTTCTGTTCCTAGTGGATTTGGTCAGTCTTTGGCTTCTTTGCAGAAGCTTGATCTTTCTTCTAACAATCTTATTGGTCTTGTTCCTGATGATTTGGGGAATTTGACTAGATTGCAAGGAACTCTTGATTTGTCTCATAATTCGTTTAGTGGCTCGATTCCAGCTAGTTTGGGGAATTTGCCTGAGAAAGTTTATGTCAATCTAGCTTACAACAACTTGAGTGGACCAATCCCACAAACCGGTGCTTTGGTGAACAGAGGACCAACTGCATTCTTGGGGAATCCAAGACTCTGTGGCCCTCCATTGAAGGATCCTTGTTTGCCAGATACGGATAGTTCTTCAACTTCTCACCCTTTTGTACCGGATAACAACGAGCAAGGTGGAGGAGGGTCAAAGAAAGGAGAAGGTTTAAGTAAAACTGCTATTGTTGCAATTGTGGTTTGTGATTTCATTGGAATCTGCATTGTGGGATTTCTCTTCTCTTGTTGTTACTTGAAGATTTGTGCACGTCGTAATAGTGTGGATGAGGAAGGCTATGTGTTGGAGAAAGAAGGGAAAGAAAAGAAAGGTTCCTTCTGTTTCAGAAGAGATGGATCAGAGTCCCCTTCTTCGGAAAATCTTGAGCCACAACAAGATCTTGTTCTGTTGGATAAACATATTGCTTTGGATTTAGATGAGCTGCTTAAGGCTTCAGCTTTCGTTCTTGGAAAAGGCGGGAACGGGATTGTGTATAAAGTTGTCCTCGAAGATGGTCTAACGGTCGCTGTTAGGAGACTGGGAGAAGGAGGTTCCCAAAGATGCAAGGAGTTTCAGACAGAAGTTGAAGCAATTGGGAAGCTAAGGCATCCGAATATCGTTAGTCTTAAAGCTTATTATTGGTCAGTTGAAGAGAAACTTCTCATCTACGACTACATTCCTAATGGAAGCCTTACCAATGCACTCCACGGAAATCCTGGAATGGTGTCATTCAAGCCTCTGTCTTGGGGAGTTCGGTTAAAGATAATGAGGGGAATCTCAAGAGGGCTGGTGTATCTTCACGAGTTTAGTCCTAAAAAGTATGTTCATGGATCTCTGAAACTCAGCAATATACTGTTGGGACAGGATATGGAGCCTCATATCTCGGATTTCGGACTTATGCACCTCTCTAGCATTGCTGGAACATTGGAATCAACTACAGTTGACCGACCATCCAACAAGACCGCCTCATCGATTGGATCATCTGCAAACTTGAGCTCATTTTATCTGGCTCCTGAAGCCACTAAAGCAACAGTGAAGCCATCACAGAAATGGGATGTATACTCATTCGGAGTGATCTTGCTAGAGATGATAACGGGAAGATTACCGATTGTTTTCGTGGGTAAATCGGAAATGGAGATAGTCAAGTGGATACAAATGTGTATCGATGAGAAGAAAGAGATGTCAGACATTTTGGATCCTTATTTGGTGCCTAATGACACAGAGATTGAAGAAGAGGTCATCGCCGTGTTGAAAATTGCAATGGCTTGTGTTAGTACTAGCCCCGAGAAACGTCCACCGATGAAGCATATCGCTGATGCTTTGACCCAAATTTGCCTTCAGTGA

Protein Analysis

702

Amino Acids

76.43

Weight (kDa)

5.88

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 23 - 64 7.9e-15 Leucine rich repeat N-terminal domain
LRR_14 PF23598 130 - 216 1.8e-09 Leucine-rich repeat region
LRR_8 PF13855 164 - 224 1.5e-07 Leucine rich repeat
LRR_4 PF12799 164 - 203 8.4e-06 Leucine Rich repeats (2 copies)
PK_Tyr_Ser-Thr PF07714 410 - 695 5e-31 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 410 - 693 4.3e-31 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1972
AccI GTMKAC 1 cut(s) 1824
AciI CCGC 2 cut(s) 1242, 1728
AcsI RAATTY 6 cut(s) 289, 373, 426, 628, 703, 2094
AcuI CTGAAG 4 cut(s) 119, 1203, 1800, 2087
AfaI GTAC 2 cut(s) 888, 2041
AfiI CCNNNNNNNGG 2 cut(s) 767, 1138
AflII CTTAAG 1 cut(s) 1211
AgeI ACCGGT 1 cut(s) 767
AjiI CACGTC 1 cut(s) 1037
AjnI CCWGG 1 cut(s) 1480
AjuI GAANNNNNNNTTGG 1 cut(s) 2085
Alw21I GWGCWC 2 cut(s) 1036, 1763
Alw26I GTCTC 3 cut(s) 214, 666, 1294
Alw44I GTGCAC 1 cut(s) 1032
Ama87I CYCGRG 1 cut(s) 2048
AoxI GGCC 1 cut(s) 823
ApaLI GTGCAC 1 cut(s) 1032
ApeKI GCWGC 1 cut(s) 1207
ApoI RAATTY 6 cut(s) 289, 373, 426, 628, 703, 2094
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AsiGI ACCGGT 1 cut(s) 767
AspS9I GGNCC 4 cut(s) 387, 752, 788, 824
AsuHPI GGTGA 3 cut(s) 419, 790, 869
AvaI CYCGRG 1 cut(s) 2048
AvaII GGWCC 3 cut(s) 387, 752, 788
BaeGI GKGCMC 1 cut(s) 1036
BaeI ACNNNNGTAYC 2 cut(s) 1907, 1940
BamHI GGATCC 2 cut(s) 838, 1960
BanI GGYRCC 1 cut(s) 1972
BanII GRGCYC 1 cut(s) 1763
BauI CACGAG 1 cut(s) 1565
BbsI GAAGAC 1 cut(s) 341
Bbv12I GWGCWC 2 cut(s) 1036, 1763
BbvI GCAGC 1 cut(s) 1194
BccI CCATC 5 cut(s) 119, 1112, 1271, 1723, 1813
BceAI ACGGC 1 cut(s) 1994
BcgI CGANNNNNNTGC 4 cut(s) 44, 65, 78, 99
BciT130I CCWGG 1 cut(s) 1482
BciVI GTATCC 1 cut(s) 1908
BcoDI GTCTC 3 cut(s) 214, 666, 1294
BfaI CTAG 7 cut(s) 540, 636, 693, 731, 1674, 1847, 2043
BfmI CTRYAG 1 cut(s) 1701
BfrI CTTAAG 1 cut(s) 1211
BfuI GTATCC 1 cut(s) 1908
BglII AGATCT 1 cut(s) 1162
BisI GCNGC 1 cut(s) 1208
BlsI GCNGC 1 cut(s) 1209
BmcAI AGTACT 1 cut(s) 2041
Bme1390I CCNGG 1 cut(s) 1482
Bme18I GGWCC 3 cut(s) 387, 752, 788
BmeT110I CYCGRG 1 cut(s) 2048
BmgBI CACGTC 1 cut(s) 1037
BmgT120I GGNCC 4 cut(s) 387, 752, 788, 824
BmiI GGNNCC 8 cut(s) 388, 840, 1099, 1318, 1638, 1776, 1962, 1974
BmrFI CCNGG 1 cut(s) 1482
BmrI ACTGGG 1 cut(s) 1313
BmsI GCATC 4 cut(s) 228, 1316, 1381, 2071
BmuI ACTGGG 1 cut(s) 1313
BpiI GAAGAC 1 cut(s) 341
Bpu10I CCTNAGC 2 cut(s) 494, 1367
BpuEI CTTGAG 5 cut(s) 327, 766, 1169, 1528, 1777
Bsa29I ATCGAT 2 cut(s) 1736, 1929
BsaJI CCNNGG 1 cut(s) 1471
BsaWI WCCGGW 2 cut(s) 767, 889
Bsc4I CCNNNNNNNGG 2 cut(s) 767, 1138
Bse118I RCCGGY 1 cut(s) 767
Bse1I ACTGG 2 cut(s) 532, 1308
Bse3DI GCAATG 3 cut(s) 307, 1677, 2031
BseBI CCWGG 1 cut(s) 1482
BseCI ATCGAT 2 cut(s) 1736, 1929
BseDI CCNNGG 1 cut(s) 1471
BseGI GGATG 5 cut(s) 219, 1057, 1372, 1715, 1825
BseLI CCNNNNNNNGG 2 cut(s) 767, 1138
BseMI GCAATG 3 cut(s) 307, 1677, 2031
BseMII CTCAG 3 cut(s) 162, 702, 1621
BseNI ACTGG 2 cut(s) 532, 1308
BseRI GAGGAG 1 cut(s) 927
BseSI GKGCMC 1 cut(s) 1036
BseXI GCAGC 1 cut(s) 1194
Bsh1285I CGRYCG 1 cut(s) 1290
BshFI GGCC 1 cut(s) 825
BshNI GGYRCC 1 cut(s) 1972
BshTI ACCGGT 1 cut(s) 767
BshVI ATCGAT 2 cut(s) 1736, 1929
BsiEI CGRYCG 1 cut(s) 1290
BsiHKAI GWGCWC 2 cut(s) 1036, 1763
BsiHKCI CYCGRG 1 cut(s) 2048
BsiSI CCGG 2 cut(s) 768, 890
BslFI GGGAC 2 cut(s) 1114, 1638
BslI CCNNNNNNNGG 2 cut(s) 767, 1138
BsmAI GTCTC 3 cut(s) 214, 666, 1294
BsmFI GGGAC 2 cut(s) 1114, 1638
BsmI GAATGC 2 cut(s) 67, 797
BsnI GGCC 1 cut(s) 825
BsoBI CYCGRG 1 cut(s) 2048
Bsp1286I GDGCHC 2 cut(s) 1036, 1763
BspACI CCGC 2 cut(s) 1242, 1728
BspANI GGCC 1 cut(s) 825
BspCNI CTCAG 3 cut(s) 161, 703, 1620
BspDI ATCGAT 2 cut(s) 1736, 1929
BspLI GGNNCC 8 cut(s) 388, 840, 1099, 1318, 1638, 1776, 1962, 1974
BspT107I GGYRCC 1 cut(s) 1972
BspTI CTTAAG 1 cut(s) 1211
BsrDI GCAATG 3 cut(s) 307, 1677, 2031
BsrFI RCCGGY 1 cut(s) 767
BsrI ACTGG 2 cut(s) 532, 1308
BssAI RCCGGY 1 cut(s) 767
BssECI CCNNGG 1 cut(s) 1471
BssNAI GTATAC 1 cut(s) 1825
BssSI CACGAG 1 cut(s) 1565
Bst1107I GTATAC 1 cut(s) 1825
Bst2BI CACGAG 1 cut(s) 1565
Bst2UI CCWGG 1 cut(s) 1482
Bst4CI ACNGT 4 cut(s) 1288, 1620, 1705, 1798
Bst6I CTCTTC 4 cut(s) 1010, 1108, 1410, 1992
BstAFI CTTAAG 1 cut(s) 1211
BstDEI CTNAG 7 cut(s) 148, 215, 308, 494, 711, 1367, 1607
BstDSI CCRYGG 1 cut(s) 1471
BstF5I GGATG 5 cut(s) 219, 1057, 1372, 1715, 1825
BstMAI GTCTC 3 cut(s) 214, 666, 1294
BstMCI CGRYCG 1 cut(s) 1290
BstMWI GCNNNNNNNGC 3 cut(s) 956, 1781, 1790
BstNI CCWGG 1 cut(s) 1482
BstSCI CCNGG 1 cut(s) 1480
BstSFI CTRYAG 1 cut(s) 1701
BstSLI GKGCMC 1 cut(s) 1036
BstV1I GCAGC 1 cut(s) 1194
BstV2I GAAGAC 1 cut(s) 341
BstX2I RGATCY 7 cut(s) 11, 118, 433, 838, 1162, 1595, 1960
BstYI RGATCY 7 cut(s) 11, 118, 433, 838, 1162, 1595, 1960
BstZ17I GTATAC 1 cut(s) 1825
Bsu15I ATCGAT 2 cut(s) 1736, 1929
BsuI GTATCC 1 cut(s) 1908
BsuRI GGCC 1 cut(s) 825
BsuTUI ATCGAT 2 cut(s) 1736, 1929
BtgI CCRYGG 1 cut(s) 1471
BtgZI GCGATG 1 cut(s) 1990
BtrI CACGTC 1 cut(s) 1037
BtsCI GGATG 5 cut(s) 219, 1057, 1372, 1715, 1825
BtsIMutI CAGTG 2 cut(s) 525, 1803
Cfr10I RCCGGY 1 cut(s) 767
Cfr13I GGNCC 4 cut(s) 387, 752, 788, 824
ClaI ATCGAT 2 cut(s) 1736, 1929
Csp6I GTAC 2 cut(s) 887, 2040
CspAI ACCGGT 1 cut(s) 767
CspCI CAANNNNNGTGG 2 cut(s) 730, 765
CviAII CATG 2 cut(s) 25, 1592
CviQI GTAC 2 cut(s) 887, 2040
DdeI CTNAG 7 cut(s) 148, 215, 308, 494, 711, 1367, 1607
Eam1104I CTCTTC 4 cut(s) 1010, 1108, 1410, 1992
EarI CTCTTC 4 cut(s) 1010, 1108, 1410, 1992
Ecl136II GAGCTC 1 cut(s) 1761
Eco24I GRGCYC 1 cut(s) 1763
Eco47I GGWCC 3 cut(s) 387, 752, 788
Eco53kI GAGCTC 1 cut(s) 1761
Eco57I CTGAAG 4 cut(s) 119, 1203, 1800, 2087
Eco88I CYCGRG 1 cut(s) 2048
EcoICRI GAGCTC 1 cut(s) 1761
EcoRII CCWGG 1 cut(s) 1480
EcoT38I GRGCYC 1 cut(s) 1763
FaeI CATG 2 cut(s) 28, 1595
FalI AAGNNNNNCTT 4 cut(s) 636, 668, 1407, 1439
FaqI GGGAC 2 cut(s) 1114, 1638
FatI CATG 2 cut(s) 24, 1591
FauI CCCGC 1 cut(s) 1235
FblI GTMKAC 1 cut(s) 1824
Fnu4HI GCNGC 1 cut(s) 1208
FokI GGATG 5 cut(s) 206, 1064, 1359, 1702, 1832
FriOI GRGCYC 1 cut(s) 1763
Fsp4HI GCNGC 1 cut(s) 1208
FspBI CTAG 7 cut(s) 540, 636, 693, 731, 1674, 1847, 2043
GluI GCNGC 1 cut(s) 1208
HaeIII GGCC 1 cut(s) 825
HapII CCGG 2 cut(s) 768, 890
Hin1II CATG 2 cut(s) 28, 1595
HincII GTYRAC 1 cut(s) 1708
HindII GTYRAC 1 cut(s) 1708
HindIII AAGCTT 2 cut(s) 575, 1395
HpaII CCGG 2 cut(s) 768, 890
HphI GGTGA 3 cut(s) 419, 790, 869
Hpy166II GTNNAC 7 cut(s) 266, 752, 781, 1034, 1708, 1825, 2060
Hpy188III TCNNGA 9 cut(s) 40, 122, 467, 614, 653, 1148, 1545, 1565, 1778
Hpy8I GTNNAC 7 cut(s) 266, 752, 781, 1034, 1708, 1825, 2060
Hpy99I CGWCG 2 cut(s) 77, 1041
HpyAV CCTTC 9 cut(s) 71, 261, 829, 926, 1052, 1073, 1111, 1143, 1304
HpyCH4III ACNGT 4 cut(s) 1288, 1620, 1705, 1798
HpyCH4IV ACGT 2 cut(s) 1036, 2056
HpyF10VI GCNNNNNNNGC 3 cut(s) 956, 1781, 1790
HpyF3I CTNAG 7 cut(s) 148, 215, 308, 494, 711, 1367, 1607
HpySE526I ACGT 2 cut(s) 1036, 2056
Hsp92II CATG 2 cut(s) 28, 1595
LmnI GCTCC 3 cut(s) 498, 1636, 1780
Lsp1109I GCAGC 1 cut(s) 1194
LweI GCATC 4 cut(s) 228, 1316, 1381, 2071
MaeI CTAG 7 cut(s) 540, 636, 693, 731, 1674, 1847, 2043
MaeII ACGT 2 cut(s) 1036, 2056
MaeIII GTNAC 3 cut(s) 181, 407, 1016
MfeI CAATTG 3 cut(s) 139, 960, 1356
MflI RGATCY 7 cut(s) 11, 118, 433, 838, 1162, 1595, 1960
MhlI GDGCHC 2 cut(s) 1036, 1763
MlyI GAGTC 4 cut(s) 189, 520, 810, 1136
MmeI TCCRAC 3 cut(s) 1050, 1155, 1743
MseI TTAA 9 cut(s) 92, 134, 336, 413, 453, 938, 1212, 1392, 1523
MslI CAYNNNNRTG 2 cut(s) 1813, 2009
MspCI CTTAAG 1 cut(s) 1211
MspI CCGG 2 cut(s) 768, 890
MspR9I CCNGG 1 cut(s) 1482
MunI CAATTG 3 cut(s) 139, 960, 1356
Mva1269I GAATGC 2 cut(s) 67, 797
MvaI CCWGG 1 cut(s) 1482
MwoI GCNNNNNNNGC 3 cut(s) 956, 1781, 1790
NlaIII CATG 2 cut(s) 28, 1595
NlaIV GGNNCC 8 cut(s) 388, 840, 1099, 1318, 1638, 1776, 1962, 1974
NmuCI GTSAC 2 cut(s) 181, 407
PctI GAATGC 2 cut(s) 67, 797
PfeI GAWTC 7 cut(s) 154, 470, 685, 808, 984, 1539, 1694
PfoI TCCNGGA 1 cut(s) 1480
PinAI ACCGGT 1 cut(s) 767
PkrI GCNGC 1 cut(s) 1209
PleI GAGTC 4 cut(s) 188, 519, 810, 1135
PpsI GAGTC 4 cut(s) 188, 519, 810, 1135
Psp124BI GAGCTC 1 cut(s) 1763
Psp6I CCWGG 1 cut(s) 1480
PspGI CCWGG 1 cut(s) 1480
PspN4I GGNNCC 8 cut(s) 388, 840, 1099, 1318, 1638, 1776, 1962, 1974
PspPI GGNCC 4 cut(s) 387, 752, 788, 824
PsuI RGATCY 7 cut(s) 11, 118, 433, 838, 1162, 1595, 1960
RsaI GTAC 2 cut(s) 888, 2041
RsaNI GTAC 2 cut(s) 887, 2040
RseI CAYNNNNRTG 2 cut(s) 1813, 2009
SacI GAGCTC 1 cut(s) 1763
SaqAI TTAA 9 cut(s) 92, 134, 336, 413, 453, 938, 1212, 1392, 1523
SatI GCNGC 1 cut(s) 1208
Sau96I GGNCC 4 cut(s) 387, 752, 788, 824
ScaI AGTACT 1 cut(s) 2041
SchI GAGTC 4 cut(s) 189, 520, 810, 1136
ScrFI CCNGG 1 cut(s) 1482
SduI GDGCHC 2 cut(s) 1036, 1763
SfaNI GCATC 4 cut(s) 228, 1316, 1381, 2071
SfcI CTRYAG 1 cut(s) 1701
SinI GGWCC 3 cut(s) 387, 752, 788
SmiMI CAYNNNNRTG 2 cut(s) 1813, 2009
SmlI CTYRAG 6 cut(s) 342, 745, 1148, 1211, 1543, 1756
SmoI CTYRAG 6 cut(s) 342, 745, 1148, 1211, 1543, 1756
SsiI CCGC 2 cut(s) 1242, 1728
SspMI CTAG 7 cut(s) 540, 636, 693, 731, 1674, 1847, 2043
SstI GAGCTC 1 cut(s) 1763
StyD4I CCNGG 1 cut(s) 1480
TaaI ACNGT 4 cut(s) 1288, 1620, 1705, 1798
TaiI ACGT 2 cut(s) 1039, 2059
TaqI TCGA 4 cut(s) 683, 1272, 1736, 1929
TaqII GACCGA 1 cut(s) 1725
TatI WGTACW 1 cut(s) 2039
TfiI GAWTC 7 cut(s) 154, 470, 685, 808, 984, 1539, 1694
Tru1I TTAA 9 cut(s) 92, 134, 336, 413, 453, 938, 1212, 1392, 1523
Tru9I TTAA 9 cut(s) 92, 134, 336, 413, 453, 938, 1212, 1392, 1523
TscAI CASTG 2 cut(s) 532, 1803
TseFI GTSAC 2 cut(s) 181, 407
TseI GCWGC 1 cut(s) 1207
Tsp45I GTSAC 2 cut(s) 181, 407
TspDTI ATGAA 4 cut(s) 13, 967, 1580, 2081
TspGWI ACGGA 3 cut(s) 269, 872, 1488
TspRI CASTG 2 cut(s) 532, 1803
Vha464I CTTAAG 1 cut(s) 1211
VneI GTGCAC 1 cut(s) 1032
VpaK11BI GGWCC 3 cut(s) 387, 752, 788
XapI RAATTY 6 cut(s) 289, 373, 426, 628, 703, 2094
XcmI CCANNNNNNNNNTGG 2 cut(s) 1478, 1812
XmiI GTMKAC 1 cut(s) 1824
XspI CTAG 7 cut(s) 540, 636, 693, 731, 1674, 1847, 2043
ZrmI AGTACT 1 cut(s) 2041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.