Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

9839316 .. 9840124

Gene Structure 809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGAGTTCAATGGTAATTTGAATGCCGGTTCTTGCTCTAGATCAAAAAAGAGTCATAGGCAAAAGCAGCAACAACCGCAGCCACAGCCACAACAACATATTGAAGAAATAAAGTATGTAGGAGTGAGGAGGAGGCCATGGGGAAGATATGCAGCTGAGATAAGAAACCCGACGACGAAAGAGAGGTATTGGCTAGGTACTTTTGACACGGCCGAGGAGGCTGCATTGGCTTATGATAGAGCCGCACGGTCCATAAGAGGCTTGACTGCTCGAACCAACTTTGTCTACTCCGATATGCCTCGTGGCTCCTCAGTAACTTCCTTTGTGTCTCCTGATGAATCCCAACGTTTCATTTCCGAGTTATTCAACCCTCCAAGCCAACTAGAAGCTACTAACAGCAACAATAACAACAATAACAATCTCTACTCATCGACCAACAACCAAAACCAGAACTCTATTGAGTTCTCATACAATGGGTGGCCTCAGGAGGCTGAATGTGGTTATCAATCTATAACCAGTAATGCTGAGCATTGTGATCATGAGCTTCCACCTCTTCCTCCCAGTACTTGTTTTGGAGCTGAACTGAGGATTCCGGAGACGGATAGCTATTGGAATGTTGCGCATGCAAGCATAGACACGTTTGCCTTCGAGCTTGATGGCTTTGTGGATCAAAACAGTCTTGGTCAGAGTGGAACAGAAGGGTTTAATTCTTTACCCTCCACATTCTTCTACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

245

Amino Acids

27.7

Weight (kDa)

5.17

Isoelectric Point (pI)

59.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	38 - 87	4.5e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	621
AccI	GTMKAC	1 cut(s)	285
AccIII	TCCGGA	1 cut(s)	592
AciI	CCGC	2 cut(s)	77, 243
AclI	AACGTT	1 cut(s)	346
AclWI	GGATC	1 cut(s)	675
AcoI	YGGCCR	1 cut(s)	210
AfaI	GTAC	2 cut(s)	199, 565
AflIII	ACRYGT	1 cut(s)	636
AgsI	TTSAA	4 cut(s)	10, 22, 104, 367
AluBI	AGCT	6 cut(s)	155, 389, 544, 578, 606, 652
AluI	AGCT	6 cut(s)	155, 389, 544, 578, 606, 652
Alw26I	GTCTC	2 cut(s)	333, 590
AlwI	GGATC	1 cut(s)	675
Aor13HI	TCCGGA	1 cut(s)	592
AoxI	GGCC	3 cut(s)	134, 210, 479
ApeKI	GCWGC	4 cut(s)	67, 79, 152, 221
AspLEI	GCGC	1 cut(s)	622
AspS9I	GGNCC	1 cut(s)	249
AvaII	GGWCC	1 cut(s)	249
AxyI	CCTNAGG	1 cut(s)	483
BauI	CACGAG	1 cut(s)	300
BbvI	GCAGC	4 cut(s)	79, 91, 164, 208
BccI	CCATC	1 cut(s)	650
BceAI	ACGGC	1 cut(s)	225
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BclI	TGATCA	1 cut(s)	535
BcoDI	GTCTC	2 cut(s)	333, 590
BfaI	CTAG	3 cut(s)	39, 194, 383
BglI	GCCNNNNNGGC	1 cut(s)	218
BisI	GCNGC	5 cut(s)	68, 80, 153, 222, 243
BlpI	GCTNAGC	1 cut(s)	525
BlsI	GCNGC	5 cut(s)	69, 81, 154, 223, 244
BmcAI	AGTACT	1 cut(s)	565
Bme18I	GGWCC	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	1 cut(s)	307
BmrI	ACTGGG	1 cut(s)	555
BmuI	ACTGGG	1 cut(s)	555
Bpu1102I	GCTNAGC	1 cut(s)	525
BsaJI	CCNNGG	2 cut(s)	137, 213
BsaWI	WCCGGW	1 cut(s)	592
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	516, 561
Bse21I	CCTNAGG	1 cut(s)	483
BseAI	TCCGGA	1 cut(s)	592
BseDI	CCNNGG	2 cut(s)	137, 213
BseMII	CTCAG	5 cut(s)	147, 324, 497, 516, 575
BseNI	ACTGG	2 cut(s)	516, 561
BseRI	GAGGAG	4 cut(s)	142, 145, 230, 298
BseX3I	CGGCCG	1 cut(s)	210
BseXI	GCAGC	4 cut(s)	79, 91, 164, 208
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	3 cut(s)	136, 212, 481
BsiEI	CGRYCG	1 cut(s)	213
BsiSI	CCGG	2 cut(s)	27, 593
BsmAI	GTCTC	2 cut(s)	333, 590
BsmBI	CGTCTC	1 cut(s)	590
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	3 cut(s)	136, 212, 481
Bsp13I	TCCGGA	1 cut(s)	592
Bsp143I	GATC	3 cut(s)	41, 535, 667
Bsp1720I	GCTNAGC	1 cut(s)	525
Bsp19I	CCATGG	1 cut(s)	137
BspACI	CCGC	2 cut(s)	77, 243
BspANI	GGCC	3 cut(s)	136, 212, 481
BspCNI	CTCAG	5 cut(s)	148, 323, 496, 517, 576
BspEI	TCCGGA	1 cut(s)	592
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	1 cut(s)	307
BspPI	GGATC	1 cut(s)	675
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	2 cut(s)	516, 561
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	2 cut(s)	137, 213
BssMI	GATC	3 cut(s)	41, 535, 667
BssSI	CACGAG	1 cut(s)	300
BssT1I	CCWWGG	1 cut(s)	137
Bst2BI	CACGAG	1 cut(s)	300
Bst4CI	ACNGT	2 cut(s)	249, 677
Bst6I	CTCTTC	1 cut(s)	558
BstC8I	GCNNGC	2 cut(s)	624, 628
BstDEI	CTNAG	5 cut(s)	156, 310, 483, 525, 584
BstDSI	CCRYGG	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	622
BstKTI	GATC	3 cut(s)	44, 538, 670
BstMAI	GTCTC	2 cut(s)	333, 590
BstMBI	GATC	3 cut(s)	41, 535, 667
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 76, 85, 218, 227
BstNSI	RCATGY	1 cut(s)	626
BstV1I	GCAGC	4 cut(s)	79, 91, 164, 208
BstZI	CGGCCG	1 cut(s)	210
Bsu36I	CCTNAGG	1 cut(s)	483
BsuRI	GGCC	3 cut(s)	136, 212, 481
BtgI	CCRYGG	1 cut(s)	137
Cac8I	GCNNGC	2 cut(s)	624, 628
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	1 cut(s)	622
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	249
Csp6I	GTAC	2 cut(s)	198, 564
CviAII	CATG	3 cut(s)	138, 539, 623
CviQI	GTAC	2 cut(s)	198, 564
DdeI	CTNAG	5 cut(s)	156, 310, 483, 525, 584
DpnI	GATC	3 cut(s)	43, 537, 669
DpnII	GATC	3 cut(s)	41, 535, 667
EaeI	YGGCCR	1 cut(s)	210
EagI	CGGCCG	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
EclXI	CGGCCG	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	249
Eco52I	CGGCCG	1 cut(s)	210
Eco81I	CCTNAGG	1 cut(s)	483
EcoT14I	CCWWGG	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	137
Esp3I	CGTCTC	1 cut(s)	590
FaeI	CATG	3 cut(s)	141, 542, 626
FatI	CATG	3 cut(s)	137, 538, 622
FbaI	TGATCA	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	5 cut(s)	68, 80, 153, 222, 243
Fsp4HI	GCNGC	5 cut(s)	68, 80, 153, 222, 243
FspBI	CTAG	3 cut(s)	39, 194, 383
FspI	TGCGCA	1 cut(s)	621
GlaI	GCGC	1 cut(s)	621
GluI	GCNGC	5 cut(s)	68, 80, 153, 222, 243
HaeIII	GGCC	3 cut(s)	136, 212, 481
HapII	CCGG	2 cut(s)	27, 593
HhaI	GCGC	1 cut(s)	622
Hin1II	CATG	3 cut(s)	141, 542, 626
Hin6I	GCGC	1 cut(s)	620
HinP1I	GCGC	1 cut(s)	620
HinfI	GANTC	3 cut(s)	52, 338, 589
HpaII	CCGG	2 cut(s)	27, 593
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	3 cut(s)	292, 358, 687
Hpy188III	TCNNGA	5 cut(s)	39, 332, 485, 539, 593
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	2 cut(s)	175, 178
HpyAV	CCTTC	2 cut(s)	655, 692
HpyCH4III	ACNGT	2 cut(s)	249, 677
HpyCH4IV	ACGT	2 cut(s)	346, 638
HpyCH4V	TGCA	3 cut(s)	152, 224, 626
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 76, 85, 218, 227
HpyF3I	CTNAG	5 cut(s)	156, 310, 483, 525, 584
HpySE526I	ACGT	2 cut(s)	346, 638
Hsp92II	CATG	3 cut(s)	141, 542, 626
HspAI	GCGC	1 cut(s)	620
Kpn2I	TCCGGA	1 cut(s)	592
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	3 cut(s)	41, 535, 667
LmnI	GCTCC	2 cut(s)	311, 575
LpnPI	CCDG	7 cut(s)	40, 345, 461, 470, 529, 574, 606
Lsp1109I	GCAGC	4 cut(s)	79, 91, 164, 208
MaeI	CTAG	3 cut(s)	39, 194, 383
MaeII	ACGT	2 cut(s)	346, 638
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	3 cut(s)	43, 537, 669
MboI	GATC	3 cut(s)	41, 535, 667
MboII	GAAGA	4 cut(s)	116, 156, 545, 718
MluCI	AATT	2 cut(s)	16, 706
MlyI	GAGTC	1 cut(s)	61
MroI	TCCGGA	1 cut(s)	592
MseI	TTAA	1 cut(s)	705
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	2 cut(s)	27, 593
Mva1269I	GAATGC	1 cut(s)	28
MwoI	GCNNNNNNNGC	5 cut(s)	67, 76, 85, 218, 227
NcoI	CCATGG	1 cut(s)	137
NdeII	GATC	3 cut(s)	41, 535, 667
NlaIII	CATG	3 cut(s)	141, 542, 626
NlaIV	GGNNCC	1 cut(s)	307
NmeAIII	GCCGAG	1 cut(s)	238
NsbI	TGCGCA	1 cut(s)	621
NspI	RCATGY	1 cut(s)	626
PaeI	GCATGC	1 cut(s)	626
PagI	TCATGA	1 cut(s)	538
PctI	GAATGC	1 cut(s)	28
PfeI	GAWTC	2 cut(s)	338, 589
PkrI	GCNGC	5 cut(s)	69, 81, 154, 223, 244
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
Psp1406I	AACGTT	1 cut(s)	346
PspN4I	GGNNCC	1 cut(s)	307
PspPI	GGNCC	1 cut(s)	249
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	2 cut(s)	199, 565
RsaNI	GTAC	2 cut(s)	198, 564
SaqAI	TTAA	1 cut(s)	705
SatI	GCNGC	5 cut(s)	68, 80, 153, 222, 243
Sau3AI	GATC	3 cut(s)	41, 535, 667
Sau96I	GGNCC	1 cut(s)	249
ScaI	AGTACT	1 cut(s)	565
SchI	GAGTC	1 cut(s)	61
SinI	GGWCC	1 cut(s)	249
SphI	GCATGC	1 cut(s)	626
Sse9I	AATT	2 cut(s)	16, 706
SsiI	CCGC	2 cut(s)	77, 243
SspMI	CTAG	3 cut(s)	39, 194, 383
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	2 cut(s)	249, 677
TaiI	ACGT	2 cut(s)	349, 641
TaqI	TCGA	3 cut(s)	271, 431, 648
TasI	AATT	2 cut(s)	16, 706
TatI	WGTACW	1 cut(s)	563
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	2 cut(s)	338, 589
Tru1I	TTAA	1 cut(s)	705
Tru9I	TTAA	1 cut(s)	705
TseI	GCWGC	4 cut(s)	67, 79, 152, 221
TspDTI	ATGAA	2 cut(s)	340, 351
TspGWI	ACGGA	1 cut(s)	614
VpaK11BI	GGWCC	1 cut(s)	249
XbaI	TCTAGA	1 cut(s)	38
XceI	RCATGY	1 cut(s)	626
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	3 cut(s)	39, 194, 383
ZrmI	AGTACT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.