Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10010124 .. 10012258

Gene Structure 2135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAGTTGGTGTGATGGTTCAGATGATAACTACGATCTTAATCTTGAAAGAGTATCGAACACTGATCATCCATCGGTTCAACTCAAAGACCAATCTCAATCATGTGTAACGAGCCGTCCAGATTCCAAGATTAGCGCTGAAACTCCCATCACGACTTGTCCTTCTTGCGGACACAAGCTCCATCATCACCAAGACGACCAGGTTGGTAGCATCAAAGATTTACCAAGCTTACCGGCAGGAGTCAAATTCGATCCGTCGGATAAAGAGATCCTTATGCATTTGGAGGCGAAGGTATCATCCGATAAGCGAAAACTTCATCCGTTGATTGATGAATTTATACCTACGCTTGAAGGAGAGAATGGAATTTGTTATACGCATCCTGAGAAACTTCCTGGAGTAAGCAAGGACGGGCAAGTACGGCACTTCTTCCACCGGCCATCAAAGGCTTATACGACCGGAACACGAAAACGAAGAAAAGTGAGCACAGATGAGGAAGGCCATGAAACAAGGTGGCACAAAACAGGCAAGACTCGACCTGTTTTGTCTCAATCAGGAGAAACCGGTTTCAAGAAGATCCTAGTGCTCTACACCAACTATGGTCGCCAGAAGAAGCCTGAGAAGACGAATTGGGTGATGCATCAGTATCATTTAGGTAGCAGCGAGGACGAAAAAGACGGTGAACCAGTCCTCTCTAAAGTCTTCTACCAAACACAGCCTAGGCAATGCGGTTCGATGGAACCTAAACCGAAAAATCTCGTAAACCTAAACCGGTTTAGTTATGAAAATATTCAGGCCGGTTTCGGGTATGAGCATGGTGGTAAAAGTGAAGAGACGACGCAGGTGATTCGAGAGTTGGTAGTTCGTGAAGGCGATGGGTCATGTTCGTTTCTTAGTTTTACTTGTGATGCAAGTAAGGGTAAAGAAAGCTTCATGAAGAATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044424 GO:0044464 GO:0045786 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2000241 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

314

Amino Acids

35.5

Weight (kDa)

7.24

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	78 - 217	1.4e-25	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	829
Acc36I	ACCTGC	1 cut(s)	829
AciI	CCGC	2 cut(s)	168, 726
AclWI	GGATC	3 cut(s)	245, 262, 568
AcoI	YGGCCR	1 cut(s)	434
AcsI	RAATTY	3 cut(s)	245, 332, 363
AfaI	GTAC	1 cut(s)	417
AfeI	AGCGCT	1 cut(s)	136
AfiI	CCNNNNNNNGG	2 cut(s)	167, 801
AgeI	ACCGGT	2 cut(s)	560, 768
AgsI	TTSAA	4 cut(s)	47, 80, 350, 568
AjnI	CCWGG	2 cut(s)	198, 391
AluBI	AGCT	3 cut(s)	178, 228, 927
AluI	AGCT	3 cut(s)	178, 228, 927
Alw21I	GWGCWC	2 cut(s)	485, 585
Alw26I	GTCTC	2 cut(s)	549, 824
AlwI	GGATC	3 cut(s)	245, 262, 568
Aor51HI	AGCGCT	1 cut(s)	136
AoxI	GGCC	3 cut(s)	434, 496, 792
ApeKI	GCWGC	1 cut(s)	657
ApoI	RAATTY	3 cut(s)	245, 332, 363
AsiGI	ACCGGT	2 cut(s)	560, 768
Asp700I	GAANNNNTTC	1 cut(s)	786
AspA2I	CCTAGG	1 cut(s)	716
AspLEI	GCGC	1 cut(s)	137
AsuHPI	GGTGA	4 cut(s)	179, 643, 689, 853
AvrII	CCTAGG	1 cut(s)	716
BbsI	GAAGAC	2 cut(s)	626, 691
Bbv12I	GWGCWC	2 cut(s)	485, 585
BbvI	GCAGC	1 cut(s)	669
BccI	CCATC	7 cut(s)	8, 79, 155, 189, 445, 727, 866
BceAI	ACGGC	2 cut(s)	99, 434
BcgI	CGANNNNNNTGC	2 cut(s)	827, 861
BciT130I	CCWGG	2 cut(s)	200, 393
BclI	TGATCA	1 cut(s)	64
BcoDI	GTCTC	2 cut(s)	549, 824
BfaI	CTAG	2 cut(s)	578, 717
BfoI	RGCGCY	1 cut(s)	138
BfuAI	ACCTGC	1 cut(s)	829
BisI	GCNGC	1 cut(s)	658
BlnI	CCTAGG	1 cut(s)	716
BlsI	GCNGC	1 cut(s)	659
Bme1390I	CCNGG	2 cut(s)	200, 393
BmiI	GGNNCC	1 cut(s)	738
BmrFI	CCNGG	2 cut(s)	200, 393
BmsI	GCATC	5 cut(s)	219, 385, 624, 646, 895
BpiI	GAAGAC	2 cut(s)	626, 691
BpmI	CTGGAG	1 cut(s)	414
BsaBI	GATNNNNATC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	716
BsaWI	WCCGGW	3 cut(s)	455, 560, 768
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 801
Bse118I	RCCGGY	5 cut(s)	232, 432, 560, 768, 794
Bse1I	ACTGG	1 cut(s)	683
Bse3DI	GCAATG	1 cut(s)	728
Bse8I	GATNNNNATC	1 cut(s)	39
BseBI	CCWGG	2 cut(s)	200, 393
BseDI	CCNNGG	1 cut(s)	716
BseGI	GGATG	4 cut(s)	67, 296, 316, 376
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	2 cut(s)	167, 801
BseMI	GCAATG	1 cut(s)	728
BseMII	CTCAG	2 cut(s)	372, 606
BseNI	ACTGG	1 cut(s)	683
BseXI	GCAGC	1 cut(s)	669
Bsh1285I	CGRYCG	1 cut(s)	456
BshFI	GGCC	3 cut(s)	436, 498, 794
BshTI	ACCGGT	2 cut(s)	560, 768
BsiEI	CGRYCG	1 cut(s)	456
BsiHKAI	GWGCWC	2 cut(s)	485, 585
BsiSI	CCGG	6 cut(s)	233, 433, 456, 561, 769, 795
BslI	CCNNNNNNNGG	2 cut(s)	167, 801
BsmAI	GTCTC	2 cut(s)	549, 824
BsmBI	CGTCTC	1 cut(s)	824
BsnI	GGCC	3 cut(s)	436, 498, 794
Bsp1286I	GDGCHC	2 cut(s)	485, 585
Bsp143I	GATC	5 cut(s)	34, 64, 250, 267, 573
BspACI	CCGC	2 cut(s)	168, 726
BspANI	GGCC	3 cut(s)	436, 498, 794
BspCNI	CTCAG	2 cut(s)	373, 607
BspHI	TCATGA	1 cut(s)	930
BspLI	GGNNCC	1 cut(s)	738
BspMI	ACCTGC	1 cut(s)	829
BspPI	GGATC	3 cut(s)	245, 262, 568
BsrDI	GCAATG	1 cut(s)	728
BsrFI	RCCGGY	5 cut(s)	232, 432, 560, 768, 794
BsrI	ACTGG	1 cut(s)	683
BssAI	RCCGGY	5 cut(s)	232, 432, 560, 768, 794
BssECI	CCNNGG	1 cut(s)	716
BssMI	GATC	5 cut(s)	34, 64, 250, 267, 573
BssT1I	CCWWGG	1 cut(s)	716
Bst2UI	CCWGG	2 cut(s)	200, 393
Bst4CI	ACNGT	1 cut(s)	677
Bst6I	CTCTTC	1 cut(s)	822
BstDEI	CTNAG	3 cut(s)	381, 615, 890
BstF5I	GGATG	4 cut(s)	67, 296, 316, 376
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	5 cut(s)	37, 67, 253, 270, 576
BstMAI	GTCTC	2 cut(s)	549, 824
BstMBI	GATC	5 cut(s)	34, 64, 250, 267, 573
BstMCI	CGRYCG	1 cut(s)	456
BstMWI	GCNNNNNNNGC	1 cut(s)	418
BstNI	CCWGG	2 cut(s)	200, 393
BstSCI	CCNGG	2 cut(s)	198, 391
BstV1I	GCAGC	1 cut(s)	669
BstV2I	GAAGAC	2 cut(s)	626, 691
BstX2I	RGATCY	2 cut(s)	267, 573
BstYI	RGATCY	2 cut(s)	267, 573
BsuRI	GGCC	3 cut(s)	436, 498, 794
BtgZI	GCGATG	1 cut(s)	885
BtsCI	GGATG	4 cut(s)	67, 296, 316, 376
BtsIMutI	CAGTG	1 cut(s)	60
BveI	ACCTGC	1 cut(s)	829
CciI	TCATGA	1 cut(s)	930
CfoI	GCGC	1 cut(s)	137
Cfr10I	RCCGGY	5 cut(s)	232, 432, 560, 768, 794
CseI	GACGC	1 cut(s)	844
CsiI	ACCWGGT	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	416
CspAI	ACCGGT	2 cut(s)	560, 768
CviAII	CATG	5 cut(s)	102, 500, 812, 879, 931
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	3 cut(s)	381, 615, 890
DpnI	GATC	5 cut(s)	36, 66, 252, 269, 575
DpnII	GATC	5 cut(s)	34, 64, 250, 267, 573
EaeI	YGGCCR	1 cut(s)	434
Eam1104I	CTCTTC	1 cut(s)	822
EarI	CTCTTC	1 cut(s)	822
Eco130I	CCWWGG	1 cut(s)	716
Eco47III	AGCGCT	1 cut(s)	136
EcoRII	CCWGG	2 cut(s)	198, 391
EcoT14I	CCWWGG	1 cut(s)	716
EcoT22I	ATGCAT	2 cut(s)	279, 639
ErhI	CCWWGG	1 cut(s)	716
Esp3I	CGTCTC	1 cut(s)	824
FaeI	CATG	5 cut(s)	105, 503, 815, 882, 934
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FatI	CATG	5 cut(s)	101, 499, 811, 878, 930
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	658
FokI	GGATG	4 cut(s)	54, 283, 303, 363
Fsp4HI	GCNGC	1 cut(s)	658
FspBI	CTAG	2 cut(s)	578, 717
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	1 cut(s)	658
GsuI	CTGGAG	1 cut(s)	414
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	3 cut(s)	436, 498, 794
HapII	CCGG	6 cut(s)	233, 433, 456, 561, 769, 795
HgaI	GACGC	1 cut(s)	844
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	5 cut(s)	105, 503, 815, 882, 934
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HindIII	AAGCTT	2 cut(s)	226, 925
HinfI	GANTC	5 cut(s)	122, 240, 529, 844, 937
HpaII	CCGG	6 cut(s)	233, 433, 456, 561, 769, 795
HphI	GGTGA	4 cut(s)	179, 643, 689, 853
Hpy166II	GTNNAC	2 cut(s)	680, 760
Hpy188I	TCNGA	3 cut(s)	22, 259, 301
Hpy188III	TCNNGA	9 cut(s)	44, 119, 151, 380, 552, 568, 848, 863, 931
Hpy8I	GTNNAC	2 cut(s)	680, 760
Hpy99I	CGWCG	2 cut(s)	259, 838
HpyAV	CCTTC	5 cut(s)	171, 283, 344, 488, 860
HpyCH4III	ACNGT	1 cut(s)	677
HpyCH4V	TGCA	3 cut(s)	277, 637, 908
HpyF10VI	GCNNNNNNNGC	1 cut(s)	418
HpyF3I	CTNAG	3 cut(s)	381, 615, 890
Hsp92II	CATG	5 cut(s)	105, 503, 815, 882, 934
HspAI	GCGC	1 cut(s)	135
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	5 cut(s)	34, 64, 250, 267, 573
LmnI	GCTCC	1 cut(s)	183
Lsp1109I	GCAGC	1 cut(s)	669
LweI	GCATC	5 cut(s)	219, 385, 624, 646, 895
MabI	ACCWGGT	1 cut(s)	198
MaeI	CTAG	2 cut(s)	578, 717
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	5 cut(s)	36, 66, 252, 269, 575
MboI	GATC	5 cut(s)	34, 64, 250, 267, 573
MboII	GAAGA	7 cut(s)	418, 483, 583, 619, 631, 691, 839
MflI	RGATCY	2 cut(s)	267, 573
MhlI	GDGCHC	2 cut(s)	485, 585
MluCI	AATT	4 cut(s)	245, 332, 363, 625
MlyI	GAGTC	2 cut(s)	249, 523
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	4 cut(s)	277, 484, 655, 698
Mph1103I	ATGCAT	2 cut(s)	279, 639
MroXI	GAANNNNTTC	1 cut(s)	786
MseI	TTAA	1 cut(s)	39
MspI	CCGG	6 cut(s)	233, 433, 456, 561, 769, 795
MspR9I	CCNGG	2 cut(s)	200, 393
MvaI	CCWGG	2 cut(s)	200, 393
MwoI	GCNNNNNNNGC	1 cut(s)	418
NdeII	GATC	5 cut(s)	34, 64, 250, 267, 573
NlaIII	CATG	5 cut(s)	105, 503, 815, 882, 934
NlaIV	GGNNCC	1 cut(s)	738
NsiI	ATGCAT	2 cut(s)	279, 639
PagI	TCATGA	1 cut(s)	930
PaqCI	CACCTGC	1 cut(s)	829
PdmI	GAANNNNTTC	1 cut(s)	786
PfeI	GAWTC	3 cut(s)	122, 844, 937
PfoI	TCCNGGA	1 cut(s)	391
PinAI	ACCGGT	2 cut(s)	560, 768
PkrI	GCNGC	1 cut(s)	659
PleI	GAGTC	2 cut(s)	248, 523
PpsI	GAGTC	2 cut(s)	248, 523
Psp6I	CCWGG	2 cut(s)	198, 391
PspGI	CCWGG	2 cut(s)	198, 391
PspN4I	GGNNCC	1 cut(s)	738
PsuI	RGATCY	2 cut(s)	267, 573
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	1 cut(s)	658
Sau3AI	GATC	5 cut(s)	34, 64, 250, 267, 573
SchI	GAGTC	2 cut(s)	249, 523
ScrFI	CCNGG	2 cut(s)	200, 393
SduI	GDGCHC	2 cut(s)	485, 585
SexAI	ACCWGGT	1 cut(s)	198
SfaNI	GCATC	5 cut(s)	219, 385, 624, 646, 895
Sse9I	AATT	4 cut(s)	245, 332, 363, 625
SsiI	CCGC	2 cut(s)	168, 726
SspI	AATATT	1 cut(s)	787
SspMI	CTAG	2 cut(s)	578, 717
StyD4I	CCNGG	2 cut(s)	198, 391
StyI	CCWWGG	1 cut(s)	716
TaaI	ACNGT	1 cut(s)	677
TaqI	TCGA	5 cut(s)	56, 249, 532, 731, 847
TasI	AATT	4 cut(s)	245, 332, 363, 625
TfiI	GAWTC	3 cut(s)	122, 844, 937
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	1 cut(s)	657
TspDTI	ATGAA	5 cut(s)	305, 345, 516, 795, 919
TspGWI	ACGGA	2 cut(s)	243, 309
TspRI	CASTG	1 cut(s)	67
XapI	RAATTY	3 cut(s)	245, 332, 363
XmaJI	CCTAGG	1 cut(s)	716
XmnI	GAANNNNTTC	1 cut(s)	786
XspI	CTAG	2 cut(s)	578, 717
Zsp2I	ATGCAT	2 cut(s)	279, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.