Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

13454496 .. 13456336

Gene Structure 1841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G36060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCGGATCTCTTCGGTGGTGGCCACGGCGGCGAGCTTATGGAAGCACTTCAACCTTTTTACAAAAGTGCTTCCACGTCTGCTTCAAATCCTGCGTTTGCGTCCTCAAACGATGCGTTTGCGTCTGCCCCAAACGACCTATTTTCTTCTTCTTCTTACTATAATCCTCATGCATCTTTATTCCCTTCACATTCCACAACCTCTTACCCGGATATTTATTCTGGATCCATGACCTATCCATCTTCATTCGGGTCGGATCTTCAACAACCCGAAAACTACCAATCTCAGTTCCATTACCAAAACACTATCACTTACACTCACCAAGACAACAACACTTGCATGCTTAACTTCATTGAGCCGAGCCAACCGGGTTTTATGACCCAACCGGGTCCGAGTTCGGGTTCGGTTTCAAAACCGGCTAAGCTCTATAGAGGAGTGAGGCAAAGACATTGGGGAAAATGGGTCGCGGAGATCCGTTTACCCAGGAACCGAACCCGACTTTGGCTCGGAACATTCGACACGGCTGAAGAAGCCGCGTTGGCTTATGATCGCGCCGCGTTTAAGCTTCGTGGTGACTCGGCTCGGCTTAACTTCCCAGCTCTCCGATACCAAACCGGCTCGTCTCCGTCTGATACCGGCGAATATGGTCCTATTCAAGCTGCCGTAGACGCTAAACTAGAAGCCATATTAGCTGAGCCGAAGAATCAGCCGGGCAAAACGGAGAGGACGTCGAGGAAACGAGCTAAAGCCGCGGCTTCTTCAGCTGAGCAGCCGTCAGCGCCACAACAACATTCCGGGTCGGGTGAAAGTGATGGGTCGGGTTCACCGACTTCGGATGTTATGGTGCAGGAGATGTGCCAAGAGCCAGAGATGCCATGGAATGAAAATTTCATGCTCGGCAAGTGTCCTTCTTATGAGATAGATTGGGCTTCAATTTTATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009415 GO:0009628 GO:0009889 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

314

Amino Acids

34.31

Weight (kDa)

5.53

Isoelectric Point (pI)

52.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	142 - 191	1e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	731
AccI	GTMKAC	1 cut(s)	666
AccII	CGCG	5 cut(s)	467, 536, 552, 557, 752
AciI	CCGC	7 cut(s)	5, 30, 467, 534, 555, 750, 752
AclWI	GGATC	5 cut(s)	15, 219, 232, 264, 466
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	886
AcuI	CTGAAG	2 cut(s)	546, 744
AcyI	GRCGYC	1 cut(s)	728
AfiI	CCNNNNNNNGG	2 cut(s)	398, 501
AgsI	TTSAA	6 cut(s)	53, 87, 263, 411, 656, 933
AjiI	CACGTC	1 cut(s)	78
AjnI	CCWGG	1 cut(s)	482
AjuI	GAANNNNNNNTTGG	2 cut(s)	484, 516
AluBI	AGCT	8 cut(s)	37, 424, 565, 599, 659, 692, 743, 764
AluI	AGCT	8 cut(s)	37, 424, 565, 599, 659, 692, 743, 764
Alw26I	GTCTC	1 cut(s)	627
AlwI	GGATC	5 cut(s)	15, 219, 232, 264, 466
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	2 cut(s)	659, 769
ApoI	RAATTY	1 cut(s)	886
Asp700I	GAANNNNTTC	1 cut(s)	48
AspLEI	GCGC	2 cut(s)	554, 781
AspS9I	GGNCC	2 cut(s)	389, 647
AsuC2I	CCSGG	5 cut(s)	209, 369, 387, 711, 796
AsuHPI	GGTGA	4 cut(s)	311, 584, 815, 816
AvaII	GGWCC	2 cut(s)	389, 647
BalI	TGGCCA	1 cut(s)	24
BamHI	GGATCC	1 cut(s)	224
BbvI	GCAGC	2 cut(s)	646, 781
BccI	CCATC	2 cut(s)	247, 806
BceAI	ACGGC	4 cut(s)	43, 537, 647, 757
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciT130I	CCWGG	1 cut(s)	484
BcnI	CCSGG	5 cut(s)	209, 369, 387, 711, 796
BcoDI	GTCTC	1 cut(s)	627
BfaI	CTAG	1 cut(s)	677
BfmI	CTRYAG	1 cut(s)	427
BfoI	RGCGCY	1 cut(s)	782
BglI	GCCNNNNNGGC	2 cut(s)	30, 539
BisI	GCNGC	7 cut(s)	31, 534, 555, 660, 750, 753, 770
BlpI	GCTNAGC	3 cut(s)	420, 693, 765
BlsI	GCNGC	7 cut(s)	32, 535, 556, 661, 751, 754, 771
Bme1390I	CCNGG	6 cut(s)	209, 369, 387, 484, 711, 796
Bme18I	GGWCC	2 cut(s)	389, 647
BmgBI	CACGTC	1 cut(s)	78
BmgT120I	GGNCC	2 cut(s)	389, 647
BmiI	GGNNCC	3 cut(s)	226, 390, 488
BmrFI	CCNGG	6 cut(s)	209, 369, 387, 484, 711, 796
BmsI	GCATC	3 cut(s)	103, 182, 861
Bpu1102I	GCTNAGC	3 cut(s)	420, 693, 765
BpuMI	CCSGG	5 cut(s)	209, 369, 387, 711, 796
BsaHI	GRCGYC	1 cut(s)	728
BsaJI	CCNNGG	4 cut(s)	25, 482, 750, 875
BsaXI	ACNNNNNCTCC	2 cut(s)	713, 743
Bsc4I	CCNNNNNNNGG	2 cut(s)	398, 501
Bse118I	RCCGGY	3 cut(s)	415, 614, 635
BseBI	CCWGG	1 cut(s)	484
BseDI	CCNNGG	4 cut(s)	25, 482, 750, 875
BseGI	GGATG	1 cut(s)	841
BseLI	CCNNNNNNNGG	2 cut(s)	398, 501
BseMII	CTCAG	3 cut(s)	299, 684, 756
BseRI	GAGGAG	1 cut(s)	447
BseXI	GCAGC	2 cut(s)	646, 781
BseYI	CCCAGC	1 cut(s)	595
BsgI	GTGCAG	1 cut(s)	866
Bsh1236I	CGCG	5 cut(s)	467, 536, 552, 557, 752
BshFI	GGCC	1 cut(s)	24
BsiSI	CCGG	8 cut(s)	209, 368, 386, 416, 615, 636, 710, 795
BslI	CCNNNNNNNGG	2 cut(s)	398, 501
BsmAI	GTCTC	1 cut(s)	627
BsmBI	CGTCTC	1 cut(s)	627
BsnI	GGCC	1 cut(s)	24
Bsp143I	GATC	5 cut(s)	7, 224, 256, 471, 547
Bsp1720I	GCTNAGC	3 cut(s)	420, 693, 765
Bsp19I	CCATGG	1 cut(s)	875
BspACI	CCGC	7 cut(s)	5, 30, 467, 534, 555, 750, 752
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	3 cut(s)	298, 685, 757
BspFNI	CGCG	5 cut(s)	467, 536, 552, 557, 752
BspLI	GGNNCC	3 cut(s)	226, 390, 488
BspPI	GGATC	5 cut(s)	15, 219, 232, 264, 466
BsrFI	RCCGGY	3 cut(s)	415, 614, 635
BssAI	RCCGGY	3 cut(s)	415, 614, 635
BssECI	CCNNGG	4 cut(s)	25, 482, 750, 875
BssMI	GATC	5 cut(s)	7, 224, 256, 471, 547
BssNI	GRCGYC	1 cut(s)	728
BssT1I	CCWWGG	1 cut(s)	875
Bst2UI	CCWGG	1 cut(s)	484
Bst6I	CTCTTC	1 cut(s)	17
BstACI	GRCGYC	1 cut(s)	728
BstC8I	GCNNGC	2 cut(s)	35, 341
BstDEI	CTNAG	4 cut(s)	285, 420, 693, 765
BstDSI	CCRYGG	3 cut(s)	25, 750, 875
BstF5I	GGATG	1 cut(s)	841
BstFNI	CGCG	5 cut(s)	467, 536, 552, 557, 752
BstH2I	RGCGCY	1 cut(s)	782
BstHHI	GCGC	2 cut(s)	554, 781
BstKTI	GATC	5 cut(s)	10, 227, 259, 474, 550
BstMAI	GTCTC	1 cut(s)	627
BstMBI	GATC	5 cut(s)	7, 224, 256, 471, 547
BstMWI	GCNNNNNNNGC	9 cut(s)	30, 530, 539, 668, 689, 749, 761, 778, 871
BstNI	CCWGG	1 cut(s)	484
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	6 cut(s)	207, 367, 385, 482, 709, 794
BstSFI	CTRYAG	1 cut(s)	427
BstUI	CGCG	5 cut(s)	467, 536, 552, 557, 752
BstV1I	GCAGC	2 cut(s)	646, 781
BstX2I	RGATCY	4 cut(s)	7, 224, 256, 471
BstYI	RGATCY	4 cut(s)	7, 224, 256, 471
BsuRI	GGCC	1 cut(s)	24
BtgI	CCRYGG	3 cut(s)	25, 750, 875
BtrI	CACGTC	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	841
Cac8I	GCNNGC	2 cut(s)	35, 341
CfoI	GCGC	2 cut(s)	554, 781
Cfr10I	RCCGGY	3 cut(s)	415, 614, 635
Cfr13I	GGNCC	2 cut(s)	389, 647
Cfr42I	CCGCGG	1 cut(s)	753
CseI	GACGC	3 cut(s)	90, 111, 677
CviAII	CATG	5 cut(s)	170, 229, 340, 876, 892
DdeI	CTNAG	4 cut(s)	285, 420, 693, 765
DpnI	GATC	5 cut(s)	9, 226, 258, 473, 549
DpnII	GATC	5 cut(s)	7, 224, 256, 471, 547
EaeI	YGGCCR	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	875
Eco47I	GGWCC	2 cut(s)	389, 647
Eco57I	CTGAAG	2 cut(s)	546, 744
EcoRII	CCWGG	1 cut(s)	482
EcoT14I	CCWWGG	1 cut(s)	875
EcoT22I	ATGCAT	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	875
Esp3I	CGTCTC	1 cut(s)	627
FaeI	CATG	5 cut(s)	173, 232, 343, 879, 895
FatI	CATG	5 cut(s)	169, 228, 339, 875, 891
FblI	GTMKAC	1 cut(s)	666
Fnu4HI	GCNGC	7 cut(s)	31, 534, 555, 660, 750, 753, 770
FokI	GGATG	1 cut(s)	848
Fsp4HI	GCNGC	7 cut(s)	31, 534, 555, 660, 750, 753, 770
FspBI	CTAG	1 cut(s)	677
GlaI	GCGC	2 cut(s)	553, 780
GluI	GCNGC	7 cut(s)	31, 534, 555, 660, 750, 753, 770
GsaI	CCCAGC	1 cut(s)	599
HaeII	RGCGCY	1 cut(s)	782
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	8 cut(s)	209, 368, 386, 416, 615, 636, 710, 795
HgaI	GACGC	3 cut(s)	90, 111, 677
HhaI	GCGC	2 cut(s)	554, 781
Hin1I	GRCGYC	1 cut(s)	728
Hin1II	CATG	5 cut(s)	173, 232, 343, 879, 895
Hin6I	GCGC	2 cut(s)	552, 779
HinP1I	GCGC	2 cut(s)	552, 779
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	2 cut(s)	575, 703
HpaII	CCGG	8 cut(s)	209, 368, 386, 416, 615, 636, 710, 795
HphI	GGTGA	4 cut(s)	311, 584, 815, 816
Hpy166II	GTNNAC	3 cut(s)	479, 667, 824
Hpy188I	TCNGA	6 cut(s)	256, 393, 509, 605, 631, 835
Hpy188III	TCNNGA	2 cut(s)	222, 942
Hpy8I	GTNNAC	3 cut(s)	479, 667, 824
Hpy99I	CGWCG	1 cut(s)	733
HpyAV	CCTTC	2 cut(s)	195, 918
HpyCH4IV	ACGT	2 cut(s)	77, 728
HpyCH4V	TGCA	3 cut(s)	173, 339, 847
HpyF10VI	GCNNNNNNNGC	9 cut(s)	30, 530, 539, 668, 689, 749, 761, 778, 871
HpyF3I	CTNAG	4 cut(s)	285, 420, 693, 765
HpySE526I	ACGT	2 cut(s)	77, 728
Hsp92I	GRCGYC	1 cut(s)	728
Hsp92II	CATG	5 cut(s)	173, 232, 343, 879, 895
HspAI	GCGC	2 cut(s)	552, 779
KspI	CCGCGG	1 cut(s)	753
Kzo9I	GATC	5 cut(s)	7, 224, 256, 471, 547
Lsp1109I	GCAGC	2 cut(s)	646, 781
LweI	GCATC	3 cut(s)	103, 182, 861
MaeI	CTAG	1 cut(s)	677
MaeII	ACGT	2 cut(s)	77, 728
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	5 cut(s)	9, 226, 258, 473, 549
MboI	GATC	5 cut(s)	7, 224, 256, 471, 547
MboII	GAAGA	9 cut(s)	4, 138, 141, 144, 234, 251, 539, 712, 750
MflI	RGATCY	4 cut(s)	7, 224, 256, 471
MlsI	TGGCCA	1 cut(s)	24
MluCI	AATT	2 cut(s)	886, 933
MluNI	TGGCCA	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	7 cut(s)	115, 177, 211, 425, 432, 717, 726
Mox20I	TGGCCA	1 cut(s)	24
Mph1103I	ATGCAT	1 cut(s)	175
MroXI	GAANNNNTTC	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	24
MseI	TTAA	3 cut(s)	345, 561, 588
MslI	CAYNNNNRTG	1 cut(s)	338
Msp20I	TGGCCA	1 cut(s)	24
MspA1I	CMGCKG	2 cut(s)	752, 764
MspI	CCGG	8 cut(s)	209, 368, 386, 416, 615, 636, 710, 795
MspR9I	CCNGG	6 cut(s)	209, 369, 387, 484, 711, 796
MvaI	CCWGG	1 cut(s)	484
MvnI	CGCG	5 cut(s)	467, 536, 552, 557, 752
MwoI	GCNNNNNNNGC	9 cut(s)	30, 530, 539, 668, 689, 749, 761, 778, 871
NciI	CCSGG	5 cut(s)	209, 369, 387, 711, 796
NcoI	CCATGG	1 cut(s)	875
NdeII	GATC	5 cut(s)	7, 224, 256, 471, 547
NlaIII	CATG	5 cut(s)	173, 232, 343, 879, 895
NlaIV	GGNNCC	3 cut(s)	226, 390, 488
NmeAIII	GCCGAG	4 cut(s)	384, 557, 562, 876
NmuCI	GTSAC	1 cut(s)	572
NsiI	ATGCAT	1 cut(s)	175
NspI	RCATGY	1 cut(s)	343
PaeI	GCATGC	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	3 cut(s)	513, 725, 824
PdmI	GAANNNNTTC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	703
PkrI	GCNGC	7 cut(s)	32, 535, 556, 661, 751, 754, 771
PleI	GAGTC	1 cut(s)	569
PpsI	GAGTC	1 cut(s)	569
Psp6I	CCWGG	1 cut(s)	482
PspFI	CCCAGC	1 cut(s)	595
PspGI	CCWGG	1 cut(s)	482
PspN4I	GGNNCC	3 cut(s)	226, 390, 488
PspPI	GGNCC	2 cut(s)	389, 647
PsuI	RGATCY	4 cut(s)	7, 224, 256, 471
PvuII	CAGCTG	1 cut(s)	764
RseI	CAYNNNNRTG	1 cut(s)	338
SacII	CCGCGG	1 cut(s)	753
SaqAI	TTAA	3 cut(s)	345, 561, 588
SatI	GCNGC	7 cut(s)	31, 534, 555, 660, 750, 753, 770
Sau3AI	GATC	5 cut(s)	7, 224, 256, 471, 547
Sau96I	GGNCC	2 cut(s)	389, 647
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	6 cut(s)	209, 369, 387, 484, 711, 796
SfaNI	GCATC	3 cut(s)	103, 182, 861
SfcI	CTRYAG	1 cut(s)	427
Sfr303I	CCGCGG	1 cut(s)	753
SgrBI	CCGCGG	1 cut(s)	753
SinI	GGWCC	2 cut(s)	389, 647
SmiMI	CAYNNNNRTG	1 cut(s)	338
SphI	GCATGC	1 cut(s)	343
Sse9I	AATT	2 cut(s)	886, 933
SsiI	CCGC	7 cut(s)	5, 30, 467, 534, 555, 750, 752
SspMI	CTAG	1 cut(s)	677
StyD4I	CCNGG	6 cut(s)	207, 367, 385, 482, 709, 794
StyI	CCWWGG	1 cut(s)	875
TaiI	ACGT	2 cut(s)	80, 731
TaqI	TCGA	2 cut(s)	516, 731
TasI	AATT	2 cut(s)	886, 933
TauI	GCSGC	5 cut(s)	33, 536, 557, 752, 755
TfiI	GAWTC	1 cut(s)	703
Tru1I	TTAA	3 cut(s)	345, 561, 588
Tru9I	TTAA	3 cut(s)	345, 561, 588
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	2 cut(s)	659, 769
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	4 cut(s)	234, 340, 880, 897
TspGWI	ACGGA	3 cut(s)	464, 615, 734
VpaK11BI	GGWCC	2 cut(s)	389, 647
XapI	RAATTY	1 cut(s)	886
XceI	RCATGY	1 cut(s)	343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	873
XmiI	GTMKAC	1 cut(s)	666
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	1 cut(s)	677
ZraI	GACGTC	1 cut(s)	729
Zsp2I	ATGCAT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.