Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

18173427 .. 18174416

Gene Structure 990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G49120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGATCAGTTTCAGAGAAGAGAACATCGATCTCAACTTGATTAAAACAATTAGTGTAATCTGTAATGATCCAGACGCCACCGATTCCTCTAGCGACGATGAATCTATCTCCGGCAATAATCCTCGCCGTCAGATCAAACCAAAACCACCGAAACGTTACGTCTCAAAGATCTGTGTCCCGACGCTGATCAAAAGGTATGAGAACGTTTCGAATTCTACAGGGAATAAAGCAGCCGGAAACCGGAAAACGTCGTCGGGTTTCAAAGGCGTACGACGGAGGCCGTGGGGGAAATTTGCGGCGGAGATAAGAAATCCGTTTGAGAAGAAGAGAAAGTGGCTTGGAACGTTTCCTACTGAAGAAGAAGCAGCAGAAGCTTACCAAAAGAGTAAAAGAGAGTTTGATGAACGATTGGGTTTAGTTAAACAGGAAAAAGACCTAGTAGATTTGACCAAGCCGTGCGGTGTACGTAAACCAGAAGAGAAGGAAGTTACTGAGAAGTCGAATTGCAAAAAGGTAAATAAGAGAATTGTTACTGATCAGAAGCCATTTGGTTGTGGTTATAACGCTGATCATGAAGAAGAGGGAGTGATTAGTAAAATGTTGGAAGATCCGTTGATGACATCGTCAATTGCTGATATTTTTGGTGATTCGGCTGTTGAAGCAAATGATATTTGGGTGGATTACAATTCAGTGGAATTTATTTCCATTGTAGATGATTTCAAGTTTGATTTTGTGGAGAATGATAGAGTAGGAAAGGAGAAAACATTTGGATTTAAGATTGGGGATCACACTAAAGTTAATCAACATGCCAAAATCGTATCGACCAATGGGGACTTATTCGTCGATGATTTACTTGATTTTGATCCGTTGATAGATGATTTTAAGTTAGAAGATTTTCCTATGGATGATCTTGGATTATTAGGAGATCCAGAGGATGATGATTTTAGTTGGTTTAATGGTACTACTGATTGGATCGATAAGTTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

329

Amino Acids

37.48

Weight (kDa)

4.92

Isoelectric Point (pI)

28.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	85 - 132	1.3e-10	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	561
AasI	GACNNNNNNGTC	1 cut(s)	839
AciI	CCGC	3 cut(s)	296, 299, 459
AclI	AACGTT	3 cut(s)	154, 204, 344
AclWI	GGATC	6 cut(s)	62, 602, 792, 857, 920, 980
AcsI	RAATTY	3 cut(s)	211, 290, 695
AcuI	CTGAAG	1 cut(s)	375
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	3 cut(s)	270, 465, 961
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	3 cut(s)	262, 659, 721
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	6 cut(s)	62, 602, 792, 857, 920, 980
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	2 cut(s)	230, 365
ApoI	RAATTY	3 cut(s)	211, 290, 695
Asp700I	GAANNNNTTC	1 cut(s)	894
AsuHPI	GGTGA	1 cut(s)	656
AsuII	TTCGAA	1 cut(s)	209
BbvI	GCAGC	2 cut(s)	242, 377
BceAI	ACGGC	3 cut(s)	111, 265, 439
BclI	TGATCA	4 cut(s)	3, 186, 535, 568
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	2 cut(s)	90, 437
BfmI	CTRYAG	1 cut(s)	216
BglII	AGATCT	1 cut(s)	168
BisI	GCNGC	3 cut(s)	231, 297, 366
BlsI	GCNGC	3 cut(s)	232, 298, 367
Bpu14I	TTCGAA	1 cut(s)	209
Bsa29I	ATCGAT	2 cut(s)	27, 975
BsaAI	YACGTR	1 cut(s)	467
BsaBI	GATNNNNATC	1 cut(s)	861
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	281
BsaWI	WCCGGW	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse8I	GATNNNNATC	1 cut(s)	861
BseCI	ATCGAT	2 cut(s)	27, 975
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	2 cut(s)	910, 940
BseJI	GATNNNNATC	1 cut(s)	861
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	483
BseXI	GCAGC	2 cut(s)	242, 377
BshFI	GGCC	1 cut(s)	280
BshVI	ATCGAT	2 cut(s)	27, 975
BsiSI	CCGG	3 cut(s)	111, 234, 241
BsiWI	CGTACG	1 cut(s)	268
BslFI	GGGAC	2 cut(s)	161, 845
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	1 cut(s)	166
BsmBI	CGTCTC	1 cut(s)	166
BsmFI	GGGAC	2 cut(s)	161, 845
BsnI	GGCC	1 cut(s)	280
Bsp119I	TTCGAA	1 cut(s)	209
BspACI	CCGC	3 cut(s)	296, 299, 459
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	1 cut(s)	484
BspDI	ATCGAT	2 cut(s)	27, 975
BspHI	TCATGA	1 cut(s)	571
BspPI	GGATC	6 cut(s)	62, 602, 792, 857, 920, 980
BspT104I	TTCGAA	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	281
BssNI	GRCGYC	1 cut(s)	75
Bst6I	CTCTTC	4 cut(s)	12, 320, 471, 573
BstACI	GRCGYC	1 cut(s)	75
BstBAI	YACGTR	1 cut(s)	467
BstBI	TTCGAA	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	492
BstDSI	CCRYGG	1 cut(s)	281
BstF5I	GGATG	2 cut(s)	910, 940
BstMAI	GTCTC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 659
BstNSI	RCATGY	1 cut(s)	809
BstSFI	CTRYAG	1 cut(s)	216
BstSNI	TACGTA	1 cut(s)	467
BstV1I	GCAGC	2 cut(s)	242, 377
BstX2I	RGATCY	3 cut(s)	168, 607, 925
BstYI	RGATCY	3 cut(s)	168, 607, 925
Bsu15I	ATCGAT	2 cut(s)	27, 975
BsuRI	GGCC	1 cut(s)	280
BsuTUI	ATCGAT	2 cut(s)	27, 975
BtgI	CCRYGG	1 cut(s)	281
BtsCI	GGATG	2 cut(s)	910, 940
BtsIMutI	CAGTG	1 cut(s)	696
CciI	TCATGA	1 cut(s)	571
ClaI	ATCGAT	2 cut(s)	27, 975
CseI	GACGC	2 cut(s)	83, 190
Csp6I	GTAC	3 cut(s)	269, 464, 960
CviAII	CATG	2 cut(s)	572, 806
CviJI	RGCY	7 cut(s)	233, 280, 337, 374, 454, 544, 653
CviKI_1	RGCY	7 cut(s)	233, 280, 337, 374, 454, 544, 653
CviQI	GTAC	3 cut(s)	269, 464, 960
DdeI	CTNAG	1 cut(s)	492
DrdI	GACNNNNNNGTC	1 cut(s)	839
DseDI	GACNNNNNNGTC	1 cut(s)	839
Eam1104I	CTCTTC	4 cut(s)	12, 320, 471, 573
EarI	CTCTTC	4 cut(s)	12, 320, 471, 573
EciI	GGCGGA	1 cut(s)	314
Eco105I	TACGTA	1 cut(s)	467
Eco57I	CTGAAG	1 cut(s)	375
EcoRI	GAATTC	1 cut(s)	211
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	2 cut(s)	575, 809
FaiI	YATR	6 cut(s)	198, 561, 573, 807, 902, 988
FaqI	GGGAC	2 cut(s)	161, 845
FatI	CATG	2 cut(s)	571, 805
FbaI	TGATCA	4 cut(s)	3, 186, 535, 568
Fnu4HI	GCNGC	3 cut(s)	231, 297, 366
FokI	GGATG	2 cut(s)	917, 947
Fsp4HI	GCNGC	3 cut(s)	231, 297, 366
FspBI	CTAG	2 cut(s)	90, 437
GluI	GCNGC	3 cut(s)	231, 297, 366
HaeIII	GGCC	1 cut(s)	280
HapII	CCGG	3 cut(s)	111, 234, 241
HgaI	GACGC	2 cut(s)	83, 190
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	575, 809
HindIII	AAGCTT	1 cut(s)	372
HinfI	GANTC	3 cut(s)	83, 101, 647
HpaII	CCGG	3 cut(s)	111, 234, 241
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	2 cut(s)	464, 470
Hpy188I	TCNGA	3 cut(s)	14, 132, 540
Hpy188III	TCNNGA	4 cut(s)	71, 178, 572, 929
Hpy8I	GTNNAC	2 cut(s)	464, 470
Hpy99I	CGWCG	6 cut(s)	98, 184, 253, 256, 276, 845
HpyAV	CCTTC	1 cut(s)	475
HpyCH4IV	ACGT	6 cut(s)	154, 159, 204, 248, 344, 466
HpyCH4V	TGCA	1 cut(s)	507
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 659
HpyF3I	CTNAG	1 cut(s)	492
HpySE526I	ACGT	6 cut(s)	154, 159, 204, 248, 344, 466
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	575, 809
Ksp22I	TGATCA	4 cut(s)	3, 186, 535, 568
LpnPI	CCDG	8 cut(s)	84, 124, 204, 247, 254, 410, 486, 942
Lsp1109I	GCAGC	2 cut(s)	242, 377
MaeI	CTAG	2 cut(s)	90, 437
MaeII	ACGT	6 cut(s)	154, 159, 204, 248, 344, 466
MaeIII	GTNAC	3 cut(s)	155, 487, 529
MfeI	CAATTG	1 cut(s)	627
MflI	RGATCY	3 cut(s)	168, 607, 925
MluCI	AATT	8 cut(s)	48, 211, 290, 502, 525, 627, 685, 695
MmeI	TCCRAC	1 cut(s)	582
MnlI	CCTC	5 cut(s)	97, 132, 270, 574, 925
MroXI	GAANNNNTTC	1 cut(s)	894
MseI	TTAA	6 cut(s)	42, 420, 774, 798, 882, 954
MspI	CCGG	3 cut(s)	111, 234, 241
MunI	CAATTG	1 cut(s)	627
MwoI	GCNNNNNNNGC	2 cut(s)	371, 659
NlaIII	CATG	2 cut(s)	575, 809
NspI	RCATGY	1 cut(s)	809
NspV	TTCGAA	1 cut(s)	209
PagI	TCATGA	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	894
PfeI	GAWTC	3 cut(s)	83, 101, 647
Pfl23II	CGTACG	1 cut(s)	268
PflFI	GACNNNGTC	1 cut(s)	622
PkrI	GCNGC	3 cut(s)	232, 298, 367
Ppu21I	YACGTR	1 cut(s)	467
PsiI	TTATAA	1 cut(s)	561
Psp1406I	AACGTT	3 cut(s)	154, 204, 344
PspLI	CGTACG	1 cut(s)	268
PsrI	GAACNNNNNNTAC	2 cut(s)	334, 366
PsuI	RGATCY	3 cut(s)	168, 607, 925
PsyI	GACNNNGTC	1 cut(s)	622
RsaI	GTAC	3 cut(s)	270, 465, 961
RsaNI	GTAC	3 cut(s)	269, 464, 960
SaqAI	TTAA	6 cut(s)	42, 420, 774, 798, 882, 954
SatI	GCNGC	3 cut(s)	231, 297, 366
SfcI	CTRYAG	1 cut(s)	216
SfuI	TTCGAA	1 cut(s)	209
SnaBI	TACGTA	1 cut(s)	467
Sse9I	AATT	8 cut(s)	48, 211, 290, 502, 525, 627, 685, 695
SsiI	CCGC	3 cut(s)	296, 299, 459
SspMI	CTAG	2 cut(s)	90, 437
TaiI	ACGT	6 cut(s)	157, 162, 207, 251, 347, 469
TaqI	TCGA	6 cut(s)	27, 209, 500, 821, 843, 975
TasI	AATT	8 cut(s)	48, 211, 290, 502, 525, 627, 685, 695
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	3 cut(s)	83, 101, 647
Tru1I	TTAA	6 cut(s)	42, 420, 774, 798, 882, 954
Tru9I	TTAA	6 cut(s)	42, 420, 774, 798, 882, 954
TscAI	CASTG	1 cut(s)	696
TseI	GCWGC	2 cut(s)	230, 365
TspDTI	ATGAA	3 cut(s)	114, 417, 588
TspGWI	ACGGA	4 cut(s)	289, 303, 600, 855
TspRI	CASTG	1 cut(s)	696
Tth111I	GACNNNGTC	1 cut(s)	622
XapI	RAATTY	3 cut(s)	211, 290, 695
XceI	RCATGY	1 cut(s)	809
XmnI	GAANNNNTTC	1 cut(s)	894
XspI	CTAG	2 cut(s)	90, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.