Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

20774046 .. 20776294

Gene Structure 2249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G55600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGAGTGATTTTGATGAAAACTTCATCGAAATGACGTCGTATTGGGCTCCACCATCCAGTCCTAGCCCAAGAACGATATTGGCAATGCTGGAGCAAACCGACAATGGTCTGAATCCAATCAGTGAGATCTTCCCTCAAGAAAGCTTGCCAAGAGATCATACTGATCAATCTGGACAAAGATCTGGTCTTCGTGAGAGACTGGCTGCAAGAGTAGGATTCAATCTTCCAACACTCAATACAGAAGAAAACATGAGTCCTTTGGATGCATTTTTCAGGAGCTCGAATGTTCCTAATTCTCCTGTCGTTGCAATCTCTCCAGGATTCAGTCCATCAGCACTATTGCATACTCCCAATATGGTCAGTGATTCTTCCCAGATTATCCCTCCGTCTTCAGCCACCAATTACGGACCTCTAGAGATGGTGGAAACTTCCGGTGAAGACAATGCAGCGATGATGATGTTCAACAACGATCTTCCTTATCAGCCGTACAATGTTGATCTGCCTTCTCTAGAAGTCTTTGATGATATTGCAACGGAAGAGTCCTTTTATATCCCATCTTATGAACCTCATGTTGACCCAATTGGAACTCCTTTAGTCACATCCTTTGAATCTGAACTCGTTGACGATGCCCATACCGACATCATCTCCATTGAGGACAGTGAGAGCGAGGATGGAAACAAAGATGATGACGACGAGGACTTCCAATACGAAGACGAAGACGAAGACCAATACGACCAAGATCAAGATGTAGATGAAGATGAAGAGGAAGAAAAAGATGAAGACAATGTTGCATTAGATGATCCTCAACCTCCACCTCCAAAGAGAAGGAGATATGAGGTATCAAACATGATTGGAGCCACAAGAACAAGCAAGACACAAAGGATCATACTTCAGATGGAAAGCGACGAAGACAATCCTAACGATGGTTATCGCTGGAGAAAATACGGTCAGAAAGTCGTCAAAGGAAATCCTAATCCGAGGAGTTACTTCAAGTGCACAAACATCGAGTGCAGAGTGAAAAAACATGTGGAGAGAGGAGCAGACAATATCAAGTTGGTTGTGACTACATACGATGGGATACACAACCATCCTTCACCACCTGCACGTAGAAGCAATTCCAGTTCAAGGAACCGGTCTGCAGGGGCAACAATACCTCAAAATCAGAATGATCGAACCAGTCGGTTAGGTAGGGCTCCTCCTACTCCTACTCCTCCTACTCCTCCTCCTTCGTCTTACACACCTGAGGAGATGAGGCCTTTCTCTTCGTTGGCTACAGAAATTGATCTGACAGAGGTTTATATGACCGGAATCTCTATGCTGCCGAATATACCGGTTTACGAGAATTCGGGTTTTATGTACCAGAATGATGAACCGACGATGAATGCGATGCCGGATGGTTCAGATGTGTACGATGGGATCATGGAACGCCTGTATTTTAAGTTTGGTGTCGACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007163 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009409 GO:0009555 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009846 GO:0009856 GO:0009880 GO:0009888 GO:0009889 GO:0009942 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030010 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044706 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

485

Amino Acids

54.55

Weight (kDa)

4.25

Isoelectric Point (pI)

67.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	307 - 364	2.5e-24	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1108
AatII	GACGTC	1 cut(s)	38
Acc36I	ACCTGC	1 cut(s)	1108
AccI	GTMKAC	1 cut(s)	1449
AclWI	GGATC	3 cut(s)	794, 890, 1424
AcsI	RAATTY	1 cut(s)	1342
AcuI	CTGAAG	2 cut(s)	375, 875
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	3 cut(s)	488, 1358, 1409
AfiI	CCNNNNNNNGG	2 cut(s)	923, 1125
AflIII	ACRYGT	2 cut(s)	1024, 1452
AgeI	ACCGGT	2 cut(s)	1131, 1330
AgsI	TTSAA	5 cut(s)	220, 463, 608, 991, 1125
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	2 cut(s)	144, 279
AluI	AGCT	2 cut(s)	144, 279
Alw21I	GWGCWC	2 cut(s)	281, 998
Alw26I	GTCTC	1 cut(s)	190
Alw44I	GTGCAC	1 cut(s)	994
AlwI	GGATC	3 cut(s)	794, 890, 1424
AoxI	GGCC	1 cut(s)	1253
ApaLI	GTGCAC	1 cut(s)	994
ApeKI	GCWGC	3 cut(s)	203, 446, 1318
ApoI	RAATTY	1 cut(s)	1342
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
AsiGI	ACCGGT	2 cut(s)	1131, 1330
Asp700I	GAANNNNTTC	1 cut(s)	1114
AspS9I	GGNCC	1 cut(s)	407
AsuHPI	GGTGA	2 cut(s)	446, 1086
AvaII	GGWCC	1 cut(s)	407
AxyI	CCTNAGG	1 cut(s)	1242
BaeGI	GKGCMC	1 cut(s)	998
BanII	GRGCYC	3 cut(s)	49, 281, 1195
BbsI	GAAGAC	8 cut(s)	179, 381, 444, 717, 723, 729, 786, 915
Bbv12I	GWGCWC	2 cut(s)	281, 998
BbvI	GCAGC	3 cut(s)	190, 458, 1305
BceAI	ACGGC	1 cut(s)	469
BcgI	CGANNNNNNTGC	2 cut(s)	985, 1019
BciT130I	CCWGG	1 cut(s)	318
BciVI	GTATCC	1 cut(s)	1071
BclI	TGATCA	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	3 cut(s)	63, 413, 509
BfmI	CTRYAG	2 cut(s)	1137, 1272
BfuAI	ACCTGC	1 cut(s)	1108
BfuI	GTATCC	1 cut(s)	1071
BglII	AGATCT	2 cut(s)	126, 179
BisI	GCNGC	3 cut(s)	204, 447, 1319
BlsI	GCNGC	3 cut(s)	205, 448, 1320
Bme1390I	CCNGG	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	4 cut(s)	48, 856, 1130, 1194
BmrFI	CCNGG	1 cut(s)	318
BmsI	GCATC	3 cut(s)	253, 616, 1377
BoxI	GACNNNNGTC	1 cut(s)	105
BpiI	GAAGAC	8 cut(s)	179, 381, 444, 717, 723, 729, 786, 915
BpmI	CTGGAG	3 cut(s)	110, 300, 955
BpuEI	CTTGAG	1 cut(s)	120
BsaAI	YACGTR	1 cut(s)	1106
BsaBI	GATNNNNATC	1 cut(s)	927
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	977
BsaWI	WCCGGW	4 cut(s)	431, 1131, 1304, 1330
BsaXI	ACNNNNNCTCC	6 cut(s)	629, 659, 1192, 1207, 1222, 1237
Bsc4I	CCNNNNNNNGG	2 cut(s)	923, 1125
Bse118I	RCCGGY	2 cut(s)	1131, 1330
Bse1I	ACTGG	4 cut(s)	57, 204, 1119, 1176
Bse21I	CCTNAGG	1 cut(s)	1242
Bse3DI	GCAATG	1 cut(s)	90
Bse8I	GATNNNNATC	1 cut(s)	927
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	977
BseGI	GGATG	6 cut(s)	53, 268, 599, 676, 1087, 1399
BseJI	GATNNNNATC	1 cut(s)	927
BseLI	CCNNNNNNNGG	2 cut(s)	923, 1125
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	1233
BseNI	ACTGG	4 cut(s)	57, 204, 1119, 1176
BseRI	GAGGAG	7 cut(s)	994, 1050, 1185, 1200, 1209, 1212, 1259
BseSI	GKGCMC	1 cut(s)	998
BseXI	GCAGC	3 cut(s)	190, 458, 1305
BsgI	GTGCAG	2 cut(s)	1030, 1086
BshFI	GGCC	1 cut(s)	1255
BshTI	ACCGGT	2 cut(s)	1131, 1330
BsiHKAI	GWGCWC	2 cut(s)	281, 998
BsiSI	CCGG	5 cut(s)	432, 1132, 1305, 1331, 1391
BslI	CCNNNNNNNGG	2 cut(s)	923, 1125
BsmAI	GTCTC	1 cut(s)	190
BsmI	GAATGC	1 cut(s)	1387
BsnI	GGCC	1 cut(s)	1255
Bsp1286I	GDGCHC	4 cut(s)	49, 281, 998, 1195
BspANI	GGCC	1 cut(s)	1255
BspCNI	CTCAG	1 cut(s)	1234
BspLI	GGNNCC	4 cut(s)	48, 856, 1130, 1194
BspMAI	CTGCAG	1 cut(s)	1141
BspMI	ACCTGC	1 cut(s)	1108
BspPI	GGATC	3 cut(s)	794, 890, 1424
BsrDI	GCAATG	1 cut(s)	90
BsrFI	RCCGGY	2 cut(s)	1131, 1330
BsrI	ACTGG	4 cut(s)	57, 204, 1119, 1176
BssAI	RCCGGY	2 cut(s)	1131, 1330
BssECI	CCNNGG	1 cut(s)	977
BssNI	GRCGYC	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	2 cut(s)	659, 947
Bst6I	CTCTTC	3 cut(s)	531, 756, 1267
BstACI	GRCGYC	1 cut(s)	35
BstBAI	YACGTR	1 cut(s)	1106
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	1 cut(s)	1242
BstF5I	GGATG	6 cut(s)	53, 268, 599, 676, 1087, 1399
BstMAI	GTCTC	1 cut(s)	190
BstNI	CCWGG	1 cut(s)	318
BstNSI	RCATGY	2 cut(s)	1028, 1456
BstPAI	GACNNNNGTC	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	316
BstSFI	CTRYAG	2 cut(s)	1137, 1272
BstSLI	GKGCMC	1 cut(s)	998
BstV1I	GCAGC	3 cut(s)	190, 458, 1305
BstV2I	GAAGAC	8 cut(s)	179, 381, 444, 717, 723, 729, 786, 915
BstX2I	RGATCY	2 cut(s)	126, 179
BstYI	RGATCY	2 cut(s)	126, 179
Bsu36I	CCTNAGG	1 cut(s)	1242
BsuI	GTATCC	1 cut(s)	1071
BsuRI	GGCC	1 cut(s)	1255
BtgZI	GCGATG	2 cut(s)	464, 1400
BtsCI	GGATG	6 cut(s)	53, 268, 599, 676, 1087, 1399
BtsIMutI	CAGTG	3 cut(s)	127, 367, 664
BveI	ACCTGC	1 cut(s)	1108
Cac8I	GCNNGC	1 cut(s)	146
Cfr10I	RCCGGY	2 cut(s)	1131, 1330
Cfr13I	GGNCC	1 cut(s)	407
Csp6I	GTAC	3 cut(s)	487, 1357, 1408
CspAI	ACCGGT	2 cut(s)	1131, 1330
CviAII	CATG	6 cut(s)	250, 569, 847, 1025, 1420, 1453
CviQI	GTAC	3 cut(s)	487, 1357, 1408
DdeI	CTNAG	1 cut(s)	1242
Eam1104I	CTCTTC	3 cut(s)	531, 756, 1267
EarI	CTCTTC	3 cut(s)	531, 756, 1267
Ecl136II	GAGCTC	1 cut(s)	279
Eco147I	AGGCCT	1 cut(s)	1255
Eco24I	GRGCYC	3 cut(s)	49, 281, 1195
Eco47I	GGWCC	1 cut(s)	407
Eco53kI	GAGCTC	1 cut(s)	279
Eco57I	CTGAAG	2 cut(s)	375, 875
Eco81I	CCTNAGG	1 cut(s)	1242
EcoICRI	GAGCTC	1 cut(s)	279
EcoRI	GAATTC	1 cut(s)	1342
EcoRII	CCWGG	1 cut(s)	316
EcoT22I	ATGCAT	1 cut(s)	268
EcoT38I	GRGCYC	3 cut(s)	49, 281, 1195
FaeI	CATG	6 cut(s)	253, 572, 850, 1028, 1423, 1456
FatI	CATG	6 cut(s)	249, 568, 846, 1024, 1419, 1452
FbaI	TGATCA	1 cut(s)	163
FblI	GTMKAC	1 cut(s)	1449
Fnu4HI	GCNGC	3 cut(s)	204, 447, 1319
FokI	GGATG	6 cut(s)	40, 275, 586, 683, 1074, 1406
FriOI	GRGCYC	3 cut(s)	49, 281, 1195
Fsp4HI	GCNGC	3 cut(s)	204, 447, 1319
FspBI	CTAG	3 cut(s)	63, 413, 509
GluI	GCNGC	3 cut(s)	204, 447, 1319
GsuI	CTGGAG	3 cut(s)	110, 300, 955
HaeIII	GGCC	1 cut(s)	1255
HapII	CCGG	5 cut(s)	432, 1132, 1305, 1331, 1391
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	6 cut(s)	253, 572, 850, 1028, 1423, 1456
HincII	GTYRAC	3 cut(s)	574, 622, 1450
HindII	GTYRAC	3 cut(s)	574, 622, 1450
HindIII	AAGCTT	1 cut(s)	142
HinfI	GANTC	8 cut(s)	112, 216, 253, 321, 365, 539, 608, 1308
HpaII	CCGG	5 cut(s)	432, 1132, 1305, 1331, 1391
HphI	GGTGA	2 cut(s)	446, 1086
Hpy166II	GTNNAC	6 cut(s)	574, 622, 996, 1336, 1408, 1450
Hpy188I	TCNGA	8 cut(s)	111, 613, 894, 951, 978, 1164, 1287, 1402
Hpy188III	TCNNGA	7 cut(s)	137, 171, 191, 274, 413, 509, 743
Hpy8I	GTNNAC	6 cut(s)	574, 622, 996, 1336, 1408, 1450
Hpy99I	CGWCG	4 cut(s)	40, 695, 908, 1378
HpyAV	CCTTC	4 cut(s)	513, 819, 1101, 1236
HpyCH4III	ACNGT	2 cut(s)	659, 947
HpyCH4IV	ACGT	2 cut(s)	35, 1105
HpyF3I	CTNAG	1 cut(s)	1242
HpySE526I	ACGT	2 cut(s)	35, 1105
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	6 cut(s)	253, 572, 850, 1028, 1423, 1456
Ksp22I	TGATCA	1 cut(s)	163
LmnI	GCTCC	6 cut(s)	52, 91, 276, 854, 1037, 1198
Lsp1109I	GCAGC	3 cut(s)	190, 458, 1305
LweI	GCATC	3 cut(s)	253, 616, 1377
MaeI	CTAG	3 cut(s)	63, 413, 509
MaeII	ACGT	2 cut(s)	35, 1105
MaeIII	GTNAC	3 cut(s)	595, 983, 1060
MfeI	CAATTG	1 cut(s)	579
MflI	RGATCY	2 cut(s)	126, 179
MhlI	GDGCHC	4 cut(s)	49, 281, 998, 1195
MluCI	AATT	6 cut(s)	292, 400, 579, 1114, 1278, 1342
MlyI	GAGTC	2 cut(s)	262, 548
MmeI	TCCRAC	1 cut(s)	251
Mph1103I	ATGCAT	1 cut(s)	268
MroXI	GAANNNNTTC	1 cut(s)	1114
MseI	TTAA	1 cut(s)	1437
MslI	CAYNNNNRTG	1 cut(s)	29
MspI	CCGG	5 cut(s)	432, 1132, 1305, 1331, 1391
MspR9I	CCNGG	1 cut(s)	318
MunI	CAATTG	1 cut(s)	579
Mva1269I	GAATGC	1 cut(s)	1387
MvaI	CCWGG	1 cut(s)	318
NlaIII	CATG	6 cut(s)	253, 572, 850, 1028, 1423, 1456
NlaIV	GGNNCC	4 cut(s)	48, 856, 1130, 1194
NmuCI	GTSAC	2 cut(s)	595, 1060
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	2 cut(s)	1028, 1456
PaqCI	CACCTGC	1 cut(s)	1108
PceI	AGGCCT	1 cut(s)	1255
PciI	ACATGT	2 cut(s)	1024, 1452
PcsI	WCGNNNNNNNCGW	1 cut(s)	1382
PctI	GAATGC	1 cut(s)	1387
PdmI	GAANNNNTTC	1 cut(s)	1114
PfeI	GAWTC	6 cut(s)	112, 216, 321, 365, 608, 1308
PfoI	TCCNGGA	1 cut(s)	316
PinAI	ACCGGT	2 cut(s)	1131, 1330
PkrI	GCNGC	3 cut(s)	205, 448, 1320
PleI	GAGTC	2 cut(s)	261, 547
PpsI	GAGTC	2 cut(s)	261, 547
Ppu21I	YACGTR	1 cut(s)	1106
PscI	ACATGT	2 cut(s)	1024, 1452
PshAI	GACNNNNGTC	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	281
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	4 cut(s)	48, 856, 1130, 1194
PspPI	GGNCC	1 cut(s)	407
PstI	CTGCAG	1 cut(s)	1141
PsuI	RGATCY	2 cut(s)	126, 179
RsaI	GTAC	3 cut(s)	488, 1358, 1409
RsaNI	GTAC	3 cut(s)	487, 1357, 1408
RseI	CAYNNNNRTG	1 cut(s)	29
SacI	GAGCTC	1 cut(s)	281
SalI	GTCGAC	1 cut(s)	1448
SaqAI	TTAA	1 cut(s)	1437
SatI	GCNGC	3 cut(s)	204, 447, 1319
Sau96I	GGNCC	1 cut(s)	407
SchI	GAGTC	2 cut(s)	262, 548
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	4 cut(s)	49, 281, 998, 1195
SfaNI	GCATC	3 cut(s)	253, 616, 1377
SfcI	CTRYAG	2 cut(s)	1137, 1272
SinI	GGWCC	1 cut(s)	407
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	135
SmoI	CTYRAG	1 cut(s)	135
Sse9I	AATT	6 cut(s)	292, 400, 579, 1114, 1278, 1342
SseBI	AGGCCT	1 cut(s)	1255
SspMI	CTAG	3 cut(s)	63, 413, 509
SstI	GAGCTC	1 cut(s)	281
StuI	AGGCCT	1 cut(s)	1255
StyD4I	CCNGG	1 cut(s)	316
TaaI	ACNGT	2 cut(s)	659, 947
TaiI	ACGT	2 cut(s)	38, 1108
TaqI	TCGA	5 cut(s)	27, 281, 1005, 1171, 1449
TasI	AATT	6 cut(s)	292, 400, 579, 1114, 1278, 1342
TfiI	GAWTC	6 cut(s)	112, 216, 321, 365, 608, 1308
Tru1I	TTAA	1 cut(s)	1437
Tru9I	TTAA	1 cut(s)	1437
TscAI	CASTG	3 cut(s)	127, 367, 664
TseFI	GTSAC	2 cut(s)	595, 1060
TseI	GCWGC	3 cut(s)	203, 446, 1318
Tsp45I	GTSAC	2 cut(s)	595, 1060
TspDTI	ATGAA	8 cut(s)	13, 30, 576, 768, 774, 792, 1383, 1394
TspGWI	ACGGA	3 cut(s)	375, 420, 548
TspRI	CASTG	3 cut(s)	127, 367, 664
VneI	GTGCAC	1 cut(s)	994
VpaK11BI	GGWCC	1 cut(s)	407
XapI	RAATTY	1 cut(s)	1342
XbaI	TCTAGA	2 cut(s)	412, 508
XceI	RCATGY	2 cut(s)	1028, 1456
XmiI	GTMKAC	1 cut(s)	1449
XmnI	GAANNNNTTC	1 cut(s)	1114
XspI	CTAG	3 cut(s)	63, 413, 509
ZraI	GACGTC	1 cut(s)	36
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.