AT1G56160
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
N/A
Physical Location & Seq
Forward (+)
21022384 .. 21023587
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G56160.1

Sequence Viewer

Length: 891 bp
ATGGGGAAAGGAAGAGCACCATGCTGCGACAAGAACAAAGTGAAGAGAGGGCCATGGAGCCCTCAAGAAGATCTCACTCTCATCACTTTTATTCAAAAACATGGCCATCAAAACTGGAGATCTCTTCCCAAGCTTGCTGGATTGTTGAGATGTGGGAAAAGTTGCCGACTAAGATGGATAAACTATCTGAGACCGGACGTGAAGCGAGGCAACTTTAGCAAAAAGGAGGAAGATGCTATCATTCACTACCATCAAACCCTTGGAAACAAGTGGTCAAAGATCGCGTCCTTCTTGCCGGGAAGAACTGACAACGAGATCAAAAACGTGTGGAACACGCATCTCAAGAAACGACTCACTCCATCTTCTTCTTCTTCATCCCTCTCTAGCACTCATGACCAAAGCACAAAAGCAGATCATGACAAGAACTGTGACGGGGCTCAAGAAGAAATACATTCAGGGTTAAATGAGAGCCAAAACTCAGCTACTTCGTCACATCACCAAGGCGAGTGTATGCACACAAAACCAGAGCTTCATGAGGTTAATGGACTCAACGAGATCCAGTTCCTGCTCGACCATGATGACTTTGATGATATAACCTCTGAGTTTCTTCAGGATAACGATATCTTATTTCCGCTAGACTCTCTTCTTCATAACCACCAAACTCACATTTCAACCCAAGAAATGACTCGAGAGGTAACCAAATCGCAATCATTTGATCATCCTCAACCGGATATCCCATGCGGATTTGAAGACACAAACGAAGAATCCGACTTGAGGAGACAGCTGGTTGAATCAACCACACCTAACAATGAGTACGACGAGTGGTTCAACTTCATTGACAACCAAACTTACTTTGATGATTTTAATTTCGTCGGAGAAGTATGTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0000302 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0002218 GO:0002237 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009646 GO:0009682 GO:0009698 GO:0009699 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009808 GO:0009809 GO:0009866 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035556 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045087 GO:0045088 GO:0045089 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0048878 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051365 GO:0051704 GO:0051707 GO:0051716 GO:0055065 GO:0055080 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071496 GO:0071704 GO:0071731 GO:0071732 GO:0080090 GO:0080134 GO:0097159 GO:0097366 GO:0097501 GO:0098542 GO:0098771 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:1990359 GO:1990532 GO:1990641 GO:2000112 GO:2000652 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

296

Amino Acids

34.11

Weight (kDa)

5.6

Isoelectric Point (pI)

56.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 16 - 63 4.6e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 19 - 78 2.4e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 114 3.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 73 - 117 1.5e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 284
AciI CCGC 2 cut(s) 632, 741
AclWI GGATC 1 cut(s) 550
AcoI YGGCCR 1 cut(s) 103
AcuI CTGAAG 1 cut(s) 593
AfaI GTAC 1 cut(s) 815
AfiI CCNNNNNNNGG 1 cut(s) 774
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 5 cut(s) 95, 672, 749, 791, 829
AjiI CACGTC 1 cut(s) 199
AluBI AGCT 4 cut(s) 133, 482, 529, 784
AluI AGCT 4 cut(s) 133, 482, 529, 784
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 2 cut(s) 184, 772
AlwI GGATC 1 cut(s) 550
AlwNI CAGNNNCTG 1 cut(s) 565
Ama87I CYCGRG 1 cut(s) 687
AoxI GGCC 2 cut(s) 50, 103
ApeKI GCWGC 1 cut(s) 24
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
AspS9I GGNCC 1 cut(s) 50
AsuC2I CCSGG 1 cut(s) 297
AsuHPI GGTGA 1 cut(s) 488
AvaI CYCGRG 1 cut(s) 687
BalI TGGCCA 1 cut(s) 105
BanII GRGCYC 2 cut(s) 62, 439
BbsI GAAGAC 1 cut(s) 756
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 11
BccI CCATC 4 cut(s) 114, 168, 258, 367
BclI TGATCA 1 cut(s) 715
BcnI CCSGG 1 cut(s) 297
BcoDI GTCTC 2 cut(s) 184, 772
BfaI CTAG 2 cut(s) 384, 635
BglII AGATCT 2 cut(s) 70, 119
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 297
BmeT110I CYCGRG 1 cut(s) 687
BmgBI CACGTC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 297
BmsI GCATC 2 cut(s) 223, 346
BpiI GAAGAC 1 cut(s) 756
BpmI CTGGAG 1 cut(s) 136
BpuEI CTTGAG 4 cut(s) 48, 326, 423, 793
BpuMI CCSGG 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 184
BsaJI CCNNGG 3 cut(s) 53, 259, 499
BsaWI WCCGGW 2 cut(s) 193, 727
Bsc4I CCNNNNNNNGG 1 cut(s) 774
Bse1I ACTGG 2 cut(s) 119, 559
BseDI CCNNGG 3 cut(s) 53, 259, 499
BseGI GGATG 2 cut(s) 374, 718
BseLI CCNNNNNNNGG 1 cut(s) 774
BseMII CTCAG 3 cut(s) 179, 492, 591
BseNI ACTGG 2 cut(s) 119, 559
BseRI GAGGAG 1 cut(s) 790
BseXI GCAGC 1 cut(s) 11
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 2 cut(s) 52, 105
BsiHKAI GWGCWC 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 687
BsiSI CCGG 3 cut(s) 194, 296, 728
BslI CCNNNNNNNGG 1 cut(s) 774
BsmAI GTCTC 2 cut(s) 184, 772
BsnI GGCC 2 cut(s) 52, 105
Bso31I GGTCTC 1 cut(s) 184
BsoBI CYCGRG 1 cut(s) 687
Bsp1286I GDGCHC 3 cut(s) 19, 62, 439
Bsp143I GATC 7 cut(s) 70, 119, 279, 315, 412, 555, 715
Bsp19I CCATGG 1 cut(s) 53
BspACI CCGC 2 cut(s) 632, 741
BspANI GGCC 2 cut(s) 52, 105
BspCNI CTCAG 3 cut(s) 180, 491, 592
BspFNI CGCG 1 cut(s) 284
BspHI TCATGA 3 cut(s) 391, 415, 532
BspLI GGNNCC 1 cut(s) 59
BspPI GGATC 1 cut(s) 550
BspQI GCTCTTC 1 cut(s) 7
BspTNI GGTCTC 1 cut(s) 184
BsrI ACTGG 2 cut(s) 119, 559
BssECI CCNNGG 3 cut(s) 53, 259, 499
BssMI GATC 7 cut(s) 70, 119, 279, 315, 412, 555, 715
BssT1I CCWWGG 3 cut(s) 53, 259, 499
Bst4CI ACNGT 1 cut(s) 428
Bst6I CTCTTC 4 cut(s) 7, 38, 129, 648
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 4 cut(s) 170, 188, 478, 600
BstDSI CCRYGG 1 cut(s) 53
BstEII GGTNACC 1 cut(s) 694
BstF5I GGATG 2 cut(s) 374, 718
BstFNI CGCG 1 cut(s) 284
BstKTI GATC 7 cut(s) 73, 122, 282, 318, 415, 558, 718
BstMAI GTCTC 2 cut(s) 184, 772
BstMBI GATC 7 cut(s) 70, 119, 279, 315, 412, 555, 715
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstPI GGTNACC 1 cut(s) 694
BstSCI CCNGG 1 cut(s) 295
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 1 cut(s) 11
BstV2I GAAGAC 1 cut(s) 756
BstX2I RGATCY 3 cut(s) 70, 119, 555
BstYI RGATCY 3 cut(s) 70, 119, 555
BsuRI GGCC 2 cut(s) 52, 105
BtgI CCRYGG 1 cut(s) 53
BtrI CACGTC 1 cut(s) 199
BtsCI GGATG 2 cut(s) 374, 718
Cac8I GCNNGC 1 cut(s) 135
CaiI CAGNNNCTG 1 cut(s) 565
CciI TCATGA 3 cut(s) 391, 415, 532
Cfr13I GGNCC 1 cut(s) 50
CseI GACGC 1 cut(s) 273
Csp6I GTAC 1 cut(s) 814
CviAII CATG 8 cut(s) 21, 54, 101, 392, 416, 533, 575, 738
CviJI RGCY 9 cut(s) 52, 60, 105, 133, 437, 471, 482, 529, 784
CviKI_1 RGCY 9 cut(s) 52, 60, 105, 133, 437, 471, 482, 529, 784
CviQI GTAC 1 cut(s) 814
DdeI CTNAG 4 cut(s) 170, 188, 478, 600
DpnI GATC 7 cut(s) 72, 121, 281, 317, 414, 557, 717
DpnII GATC 7 cut(s) 70, 119, 279, 315, 412, 555, 715
EaeI YGGCCR 1 cut(s) 103
Eam1104I CTCTTC 4 cut(s) 7, 38, 129, 648
EarI CTCTTC 4 cut(s) 7, 38, 129, 648
Eco130I CCWWGG 3 cut(s) 53, 259, 499
Eco24I GRGCYC 2 cut(s) 62, 439
Eco31I GGTCTC 1 cut(s) 184
Eco32I GATATC 2 cut(s) 622, 733
Eco57I CTGAAG 1 cut(s) 593
Eco88I CYCGRG 1 cut(s) 687
Eco91I GGTNACC 1 cut(s) 694
EcoO65I GGTNACC 1 cut(s) 694
EcoRV GATATC 2 cut(s) 622, 733
EcoT14I CCWWGG 3 cut(s) 53, 259, 499
EcoT38I GRGCYC 2 cut(s) 62, 439
ErhI CCWWGG 3 cut(s) 53, 259, 499
FaeI CATG 8 cut(s) 24, 57, 104, 395, 419, 536, 578, 741
FatI CATG 8 cut(s) 20, 53, 100, 391, 415, 532, 574, 737
FbaI TGATCA 1 cut(s) 715
Fnu4HI GCNGC 1 cut(s) 25
FokI GGATG 2 cut(s) 361, 705
FriOI GRGCYC 2 cut(s) 62, 439
Fsp4HI GCNGC 1 cut(s) 25
FspBI CTAG 2 cut(s) 384, 635
GluI GCNGC 1 cut(s) 25
GsuI CTGGAG 1 cut(s) 136
HaeIII GGCC 2 cut(s) 52, 105
HapII CCGG 3 cut(s) 194, 296, 728
HgaI GACGC 1 cut(s) 273
Hin1II CATG 8 cut(s) 24, 57, 104, 395, 419, 536, 578, 741
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 6 cut(s) 351, 546, 638, 685, 764, 791
HpaII CCGG 3 cut(s) 194, 296, 728
HphI GGTGA 1 cut(s) 488
Hpy188I TCNGA 4 cut(s) 189, 601, 769, 875
Hpy188III TCNNGA 8 cut(s) 65, 343, 392, 416, 440, 533, 611, 689
Hpy99I CGWCG 2 cut(s) 821, 875
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4IV ACGT 2 cut(s) 198, 324
HpyCH4V TGCA 1 cut(s) 514
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 4 cut(s) 170, 188, 478, 600
HpySE526I ACGT 2 cut(s) 198, 324
Hsp92II CATG 8 cut(s) 24, 57, 104, 395, 419, 536, 578, 741
Ksp22I TGATCA 1 cut(s) 715
Kzo9I GATC 7 cut(s) 70, 119, 279, 315, 412, 555, 715
LguI GCTCTTC 1 cut(s) 7
LmnI GCTCC 1 cut(s) 57
Lsp1109I GCAGC 1 cut(s) 11
LweI GCATC 2 cut(s) 223, 346
MaeI CTAG 2 cut(s) 384, 635
MaeII ACGT 2 cut(s) 198, 324
MaeIII GTNAC 3 cut(s) 428, 489, 694
MalI GATC 7 cut(s) 72, 121, 281, 317, 414, 557, 717
MboI GATC 7 cut(s) 70, 119, 279, 315, 412, 555, 715
MflI RGATCY 3 cut(s) 70, 119, 555
MhlI GDGCHC 3 cut(s) 19, 62, 439
MlsI TGGCCA 1 cut(s) 105
MluCI AATT 1 cut(s) 865
MluNI TGGCCA 1 cut(s) 105
MlyI GAGTC 4 cut(s) 345, 540, 632, 679
MmeI TCCRAC 2 cut(s) 792, 853
Mox20I TGGCCA 1 cut(s) 105
MscI TGGCCA 1 cut(s) 105
MseI TTAA 3 cut(s) 461, 540, 864
Msp20I TGGCCA 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 784
MspI CCGG 3 cut(s) 194, 296, 728
MspR9I CCNGG 1 cut(s) 297
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 216
NciI CCSGG 1 cut(s) 297
NcoI CCATGG 1 cut(s) 53
NdeII GATC 7 cut(s) 70, 119, 279, 315, 412, 555, 715
NlaIII CATG 8 cut(s) 24, 57, 104, 395, 419, 536, 578, 741
NlaIV GGNNCC 1 cut(s) 59
NmuCI GTSAC 2 cut(s) 428, 489
PaeR7I CTCGAG 1 cut(s) 687
PagI TCATGA 3 cut(s) 391, 415, 532
PciSI GCTCTTC 1 cut(s) 7
PcsI WCGNNNNNNNCGW 1 cut(s) 765
PfeI GAWTC 2 cut(s) 764, 791
PkrI GCNGC 1 cut(s) 26
PleI GAGTC 4 cut(s) 345, 540, 632, 679
PpsI GAGTC 4 cut(s) 345, 540, 632, 679
PspEI GGTNACC 1 cut(s) 694
PspN4I GGNNCC 1 cut(s) 59
PspPI GGNCC 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 565
PsuI RGATCY 3 cut(s) 70, 119, 555
PvuII CAGCTG 1 cut(s) 784
RsaI GTAC 1 cut(s) 815
RsaNI GTAC 1 cut(s) 814
SapI GCTCTTC 1 cut(s) 7
SaqAI TTAA 3 cut(s) 461, 540, 864
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 7 cut(s) 70, 119, 279, 315, 412, 555, 715
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 4 cut(s) 345, 540, 632, 679
ScrFI CCNGG 1 cut(s) 297
SduI GDGCHC 3 cut(s) 19, 62, 439
SfaNI GCATC 2 cut(s) 223, 346
Sfr274I CTCGAG 1 cut(s) 687
SlaI CTCGAG 1 cut(s) 687
SmlI CTYRAG 5 cut(s) 63, 341, 438, 687, 772
SmoI CTYRAG 5 cut(s) 63, 341, 438, 687, 772
Sse9I AATT 1 cut(s) 865
SsiI CCGC 2 cut(s) 632, 741
SspMI CTAG 2 cut(s) 384, 635
StyD4I CCNGG 1 cut(s) 295
StyI CCWWGG 3 cut(s) 53, 259, 499
TaaI ACNGT 1 cut(s) 428
TaiI ACGT 2 cut(s) 201, 327
TaqI TCGA 2 cut(s) 570, 688
TasI AATT 1 cut(s) 865
TfiI GAWTC 2 cut(s) 764, 791
Tru1I TTAA 3 cut(s) 461, 540, 864
Tru9I TTAA 3 cut(s) 461, 540, 864
TseFI GTSAC 2 cut(s) 428, 489
TseI GCWGC 1 cut(s) 24
Tsp45I GTSAC 2 cut(s) 428, 489
TspDTI ATGAA 4 cut(s) 363, 521, 638, 823
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XhoI CTCGAG 1 cut(s) 687
XspI CTAG 2 cut(s) 384, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.