AT1G68780

Piriformospora indica-insensitive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
N/A
Physical Location & Seq
Reverse (-)
25831662 .. 25833966
2305 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G68780.1

Sequence Viewer

Length: 1299 bp
ATGAAGATGCTGAGACTTAGAAAGAAGCAACATTTGGTGTTTCTACTATGCGTGTGGTGTTTGGTGGTGGATTGGAGCAAAGCAGAAACAGAGGAAAGTGATGGAAGTCCCATGGAGAAAACAGAGCAAGCTGCTCTATACTCTACCATTCAAGGCTTTGTTGGTGAATCTTGGAATGGCTCTTATCTTTATCCTGACCCTTGTGGCTGGACTCCTATCCAGGGTGTGACTTGTGATATCTATGATGAGCTTTGGTATGTAACTGCTCTAAGCTTTGGGACTATGAAAGACAACTCTCTTGCTTGTTCTGAAAGTCCAGTGATCAGACCACAACTCTTTGAGCTCAAGCACCTCAAGTCTCTCTCTCTTTTCAACTGCTTCACAACGCCTAACCGATATCTAGCTTCAATCTCCGATGAAAAGTGGTTGGATCTCTCTAAAAGCTTGGAGAGACTTGAGATCAGATCAAACCCGGGACTGATAGGTGAACTCCCTTCTGTCATCACTAACCTCACCAACCTTCAATCTCTGGTGGTGCTAGAAAACAAGTTAACAGGTCCATTGCCAGTGAATTTGGCCAAGTTAACCAGATTGAGACGTTTAGTACTGTCTGGAAACCGGTTCACAGGGAGAATACCTGAGGTCTACGGGTTAACCGGATTGTTGATATTGGATGTGAGCAGGAATTTCTTATCTGGGGCGTTGCCTTTAAGCGTTGGAGGATTGTATTCTCTGCTGAAACTTGATCTTAGTAACAATTACTTGGAAGGAAAGTTACCTAGAGAGCTAGAGTCCTTGAAGAATCTCACTCTATTGGACTTGAGAAACAACAGATTATCAGGTGGGTTGAGTAAAGAGATCCAAGAGATGACTTCTTTGGTAGAACTGGTTCTGTCCAATAATCGCCTAGCCGGGGACTTGACAGGAATAAAGTGGAGAAATCTGAAGAATTTAGTGGTTCTTGATCTCTCCAACACAGGCTTAAAAGGGGAGATTCCTGGTTCAATCTTGGAGCTCAAGAAACTGAGGTTTTTGGGTTTGAGCAACAACAATCTCGGAGGCAAACTCATTCCACAAATGGAAACCGAAATGCCTAGTCTCAGCGCGCTTTACGTGAATGGAAATAACATCAGCGGAGAGTTGGAATTCTCTAGGTACTTTTATGAGAGAATGGGAAGGAGACTTGGTGTTTGGGGGAACCCTAATCTGTGTTACAACGGAGATGAGACCAAGAACCTTAGCGATCATGTTCCTTTCGGAGTGAACCAATGTAAGAGAATTAAGGCAGATAAATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8

Protein Analysis

432

Amino Acids

48.46

Weight (kDa)

8.48

Isoelectric Point (pI)

32.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 221 - 279 1.1e-07 Leucine rich repeat
LRR_8 PF13855 292 - 352 3.2e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 645
AccII CGCG 1 cut(s) 1106
AciI CCGC 1 cut(s) 1134
AclWI GGATC 2 cut(s) 438, 853
AcoI YGGCCR 1 cut(s) 576
AcsI RAATTY 4 cut(s) 571, 685, 949, 1145
AcuI CTGAAG 1 cut(s) 965
AfaI GTAC 2 cut(s) 606, 1157
AfiI CCNNNNNNNGG 2 cut(s) 221, 913
AgeI ACCGGT 1 cut(s) 618
AgsI TTSAA 6 cut(s) 152, 373, 408, 524, 799, 1005
AjnI CCWGG 2 cut(s) 219, 997
AjuI GAANNNNNNNTTGG 2 cut(s) 17, 49
AluBI AGCT 8 cut(s) 131, 250, 273, 343, 404, 444, 787, 1015
AluI AGCT 8 cut(s) 131, 250, 273, 343, 404, 444, 787, 1015
Alw21I GWGCWC 2 cut(s) 345, 1017
Alw26I GTCTC 7 cut(s) 7, 363, 445, 589, 1103, 1174, 1220
AlwI GGATC 2 cut(s) 438, 853
Ama87I CYCGRG 1 cut(s) 472
AoxI GGCC 1 cut(s) 576
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 4 cut(s) 571, 685, 949, 1145
ArsI GACNNNNNNTTYG 2 cut(s) 1173, 1205
AsiGI ACCGGT 1 cut(s) 618
Asp700I GAANNNNTTC 1 cut(s) 888
AspLEI GCGC 2 cut(s) 1106, 1108
AspS9I GGNCC 1 cut(s) 557
AsuC2I CCSGG 3 cut(s) 473, 474, 913
AsuHPI GGTGA 3 cut(s) 176, 497, 505
AvaI CYCGRG 1 cut(s) 472
AvaII GGWCC 1 cut(s) 557
AxyI CCTNAGG 1 cut(s) 639
BalI TGGCCA 1 cut(s) 578
BanII GRGCYC 2 cut(s) 345, 1017
BarI GAAGNNNNNNTAC 2 cut(s) 759, 791
Bbv12I GWGCWC 2 cut(s) 345, 1017
BbvI GCAGC 1 cut(s) 118
BccI CCATC 1 cut(s) 95
BciT130I CCWGG 2 cut(s) 221, 999
BclI TGATCA 1 cut(s) 321
BcnI CCSGG 3 cut(s) 473, 474, 913
BcoDI GTCTC 7 cut(s) 7, 363, 445, 589, 1103, 1174, 1220
BfaI CTAG 7 cut(s) 401, 539, 780, 788, 908, 1095, 1152
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmcAI AGTACT 1 cut(s) 606
Bme1390I CCNGG 5 cut(s) 221, 473, 474, 913, 999
Bme18I GGWCC 1 cut(s) 557
BmeT110I CYCGRG 1 cut(s) 472
BmgT120I GGNCC 1 cut(s) 557
BmiI GGNNCC 1 cut(s) 1199
BmrFI CCNGG 5 cut(s) 221, 473, 474, 913, 999
BplI GAGNNNNNCTC 2 cut(s) 1050, 1082
Bpu10I CCTNAGC 1 cut(s) 1238
BpuEI CTTGAG 5 cut(s) 329, 338, 476, 841, 1001
BpuMI CCSGG 3 cut(s) 473, 474, 913
BsaAI YACGTR 1 cut(s) 1114
BsaI GGTCTC 1 cut(s) 1220
BsaJI CCNNGG 4 cut(s) 111, 220, 472, 912
BsaWI WCCGGW 2 cut(s) 618, 656
BsaXI ACNNNNNCTCC 2 cut(s) 1171, 1201
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 913
Bse118I RCCGGY 1 cut(s) 618
Bse1I ACTGG 3 cut(s) 317, 566, 891
Bse21I CCTNAGG 1 cut(s) 639
Bse3DI GCAATG 1 cut(s) 560
BseBI CCWGG 2 cut(s) 221, 999
BseDI CCNNGG 4 cut(s) 111, 220, 472, 912
BseGI GGATG 1 cut(s) 679
BseLI CCNNNNNNNGG 2 cut(s) 221, 913
BseMI GCAATG 1 cut(s) 560
BseMII CTCAG 3 cut(s) 630, 1016, 1114
BseNI ACTGG 3 cut(s) 317, 566, 891
BsePI GCGCGC 1 cut(s) 1104
BseXI GCAGC 1 cut(s) 118
Bsh1236I CGCG 1 cut(s) 1106
BshFI GGCC 1 cut(s) 578
BshTI ACCGGT 1 cut(s) 618
BsiHKAI GWGCWC 2 cut(s) 345, 1017
BsiHKCI CYCGRG 1 cut(s) 472
BsiSI CCGG 4 cut(s) 473, 619, 657, 912
BslFI GGGAC 4 cut(s) 93, 292, 489, 929
BslI CCNNNNNNNGG 2 cut(s) 221, 913
BsmAI GTCTC 7 cut(s) 7, 363, 445, 589, 1103, 1174, 1220
BsmBI CGTCTC 1 cut(s) 589
BsmFI GGGAC 4 cut(s) 93, 292, 489, 929
BsnI GGCC 1 cut(s) 578
Bso31I GGTCTC 1 cut(s) 1220
BsoBI CYCGRG 1 cut(s) 472
Bsp1286I GDGCHC 2 cut(s) 345, 1017
Bsp143I GATC 8 cut(s) 321, 430, 459, 464, 745, 858, 964, 1243
Bsp19I CCATGG 1 cut(s) 111
BspACI CCGC 1 cut(s) 1134
BspANI GGCC 1 cut(s) 578
BspCNI CTCAG 3 cut(s) 631, 1017, 1113
BspFNI CGCG 1 cut(s) 1106
BspLI GGNNCC 1 cut(s) 1199
BspPI GGATC 2 cut(s) 438, 853
BspTNI GGTCTC 1 cut(s) 1220
BsrDI GCAATG 1 cut(s) 560
BsrFI RCCGGY 1 cut(s) 618
BsrI ACTGG 3 cut(s) 317, 566, 891
BssAI RCCGGY 1 cut(s) 618
BssECI CCNNGG 4 cut(s) 111, 220, 472, 912
BssHII GCGCGC 1 cut(s) 1104
BssMI GATC 8 cut(s) 321, 430, 459, 464, 745, 858, 964, 1243
BssT1I CCWWGG 1 cut(s) 111
Bst2UI CCWGG 2 cut(s) 221, 999
Bst4CI ACNGT 1 cut(s) 609
BstBAI YACGTR 1 cut(s) 1114
BstC8I GCNNGC 2 cut(s) 129, 1106
BstDEI CTNAG 8 cut(s) 11, 17, 269, 639, 749, 1025, 1100, 1238
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 679
BstFNI CGCG 1 cut(s) 1106
BstHHI GCGC 2 cut(s) 1106, 1108
BstKTI GATC 8 cut(s) 324, 433, 462, 467, 748, 861, 967, 1246
BstMAI GTCTC 7 cut(s) 7, 363, 445, 589, 1103, 1174, 1220
BstMBI GATC 8 cut(s) 321, 430, 459, 464, 745, 858, 964, 1243
BstNI CCWGG 2 cut(s) 221, 999
BstSCI CCNGG 5 cut(s) 219, 471, 472, 911, 997
BstUI CGCG 1 cut(s) 1106
BstV1I GCAGC 1 cut(s) 118
BstX2I RGATCY 2 cut(s) 430, 858
BstYI RGATCY 2 cut(s) 430, 858
Bsu36I CCTNAGG 1 cut(s) 639
BsuRI GGCC 1 cut(s) 578
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 1 cut(s) 679
BtsIMutI CAGTG 2 cut(s) 324, 573
Cac8I GCNNGC 2 cut(s) 129, 1106
CfoI GCGC 2 cut(s) 1106, 1108
Cfr10I RCCGGY 1 cut(s) 618
Cfr13I GGNCC 1 cut(s) 557
Cfr9I CCCGGG 1 cut(s) 472
Csp6I GTAC 2 cut(s) 605, 1156
CspAI ACCGGT 1 cut(s) 618
CviAII CATG 2 cut(s) 112, 1247
CviQI GTAC 2 cut(s) 605, 1156
DdeI CTNAG 8 cut(s) 11, 17, 269, 639, 749, 1025, 1100, 1238
DpnI GATC 8 cut(s) 323, 432, 461, 466, 747, 860, 966, 1245
DpnII GATC 8 cut(s) 321, 430, 459, 464, 745, 858, 964, 1243
EaeI YGGCCR 1 cut(s) 576
Ecl136II GAGCTC 2 cut(s) 343, 1015
Eco130I CCWWGG 1 cut(s) 111
Eco24I GRGCYC 2 cut(s) 345, 1017
Eco31I GGTCTC 1 cut(s) 1220
Eco32I GATATC 2 cut(s) 238, 398
Eco47I GGWCC 1 cut(s) 557
Eco53kI GAGCTC 2 cut(s) 343, 1015
Eco57I CTGAAG 1 cut(s) 965
Eco81I CCTNAGG 1 cut(s) 639
Eco88I CYCGRG 1 cut(s) 472
EcoICRI GAGCTC 2 cut(s) 343, 1015
EcoRI GAATTC 1 cut(s) 1145
EcoRII CCWGG 2 cut(s) 219, 997
EcoRV GATATC 2 cut(s) 238, 398
EcoT14I CCWWGG 1 cut(s) 111
EcoT38I GRGCYC 2 cut(s) 345, 1017
ErhI CCWWGG 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 589
FaeI CATG 2 cut(s) 115, 1250
FaiI YATR 8 cut(s) 49, 113, 139, 243, 258, 284, 1164, 1248
FaqI GGGAC 4 cut(s) 93, 292, 489, 929
FatI CATG 2 cut(s) 111, 1246
FbaI TGATCA 1 cut(s) 321
FblI GTMKAC 1 cut(s) 645
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 686
FriOI GRGCYC 2 cut(s) 345, 1017
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 7 cut(s) 401, 539, 780, 788, 908, 1095, 1152
GlaI GCGC 2 cut(s) 1105, 1107
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 578
HapII CCGG 4 cut(s) 473, 619, 657, 912
HhaI GCGC 2 cut(s) 1106, 1108
Hin1II CATG 2 cut(s) 115, 1250
Hin6I GCGC 2 cut(s) 1104, 1106
HinP1I GCGC 2 cut(s) 1104, 1106
HincII GTYRAC 3 cut(s) 552, 585, 654
HindII GTYRAC 3 cut(s) 552, 585, 654
HindIII AAGCTT 2 cut(s) 271, 442
HinfI GANTC 5 cut(s) 167, 211, 791, 802, 994
HpaI GTTAAC 3 cut(s) 552, 585, 654
HpaII CCGG 4 cut(s) 473, 619, 657, 912
HphI GGTGA 3 cut(s) 176, 497, 505
Hpy166II GTNNAC 7 cut(s) 488, 552, 585, 624, 646, 654, 1264
Hpy188I TCNGA 7 cut(s) 310, 326, 415, 464, 945, 1058, 1259
Hpy188III TCNNGA 4 cut(s) 194, 612, 962, 1018
Hpy8I GTNNAC 7 cut(s) 488, 552, 585, 624, 646, 654, 1264
HpyAV CCTTC 4 cut(s) 504, 530, 761, 1170
HpyCH4III ACNGT 1 cut(s) 609
HpyCH4IV ACGT 2 cut(s) 598, 1113
HpyF3I CTNAG 8 cut(s) 11, 17, 269, 639, 749, 1025, 1100, 1238
HpySE526I ACGT 2 cut(s) 598, 1113
Hsp92II CATG 2 cut(s) 115, 1250
HspAI GCGC 2 cut(s) 1104, 1106
Ksp22I TGATCA 1 cut(s) 321
KspAI GTTAAC 3 cut(s) 552, 585, 654
Kzo9I GATC 8 cut(s) 321, 430, 459, 464, 745, 858, 964, 1243
LmnI GCTCC 2 cut(s) 75, 1012
Lsp1109I GCAGC 1 cut(s) 118
MaeI CTAG 7 cut(s) 401, 539, 780, 788, 908, 1095, 1152
MaeII ACGT 2 cut(s) 598, 1113
MaeIII GTNAC 5 cut(s) 226, 259, 752, 774, 1211
MalI GATC 8 cut(s) 323, 432, 461, 466, 747, 860, 966, 1245
MboI GATC 8 cut(s) 321, 430, 459, 464, 745, 858, 964, 1243
MboII GAAGA 3 cut(s) 16, 811, 958
MflI RGATCY 2 cut(s) 430, 858
MhlI GDGCHC 2 cut(s) 345, 1017
MlsI TGGCCA 1 cut(s) 578
MluCI AATT 6 cut(s) 571, 685, 757, 949, 1145, 1278
MluNI TGGCCA 1 cut(s) 578
MlyI GAGTC 2 cut(s) 205, 800
MmeI TCCRAC 4 cut(s) 408, 697, 996, 1122
MnlI CCTC 7 cut(s) 85, 362, 521, 634, 713, 1020, 1052
Mox20I TGGCCA 1 cut(s) 578
MroXI GAANNNNTTC 1 cut(s) 888
MscI TGGCCA 1 cut(s) 578
MseI TTAA 6 cut(s) 551, 584, 653, 710, 983, 1281
Msp20I TGGCCA 1 cut(s) 578
MspA1I CMGCKG 1 cut(s) 1134
MspI CCGG 4 cut(s) 473, 619, 657, 912
MspR9I CCNGG 5 cut(s) 221, 473, 474, 913, 999
MvaI CCWGG 2 cut(s) 221, 999
MvnI CGCG 1 cut(s) 1106
NciI CCSGG 3 cut(s) 473, 474, 913
NcoI CCATGG 1 cut(s) 111
NdeII GATC 8 cut(s) 321, 430, 459, 464, 745, 858, 964, 1243
NlaIII CATG 2 cut(s) 115, 1250
NlaIV GGNNCC 1 cut(s) 1199
NmuCI GTSAC 1 cut(s) 226
PauI GCGCGC 1 cut(s) 1104
PdmI GAANNNNTTC 1 cut(s) 888
PfeI GAWTC 3 cut(s) 167, 802, 994
PinAI ACCGGT 1 cut(s) 618
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 2 cut(s) 205, 799
PpsI GAGTC 2 cut(s) 205, 799
Ppu21I YACGTR 1 cut(s) 1114
Psp124BI GAGCTC 2 cut(s) 345, 1017
Psp6I CCWGG 2 cut(s) 219, 997
PspGI CCWGG 2 cut(s) 219, 997
PspN4I GGNNCC 1 cut(s) 1199
PspPI GGNCC 1 cut(s) 557
PsrI GAACNNNNNNTAC 2 cut(s) 873, 905
PsuI RGATCY 2 cut(s) 430, 858
PteI GCGCGC 1 cut(s) 1104
RsaI GTAC 2 cut(s) 606, 1157
RsaNI GTAC 2 cut(s) 605, 1156
SacI GAGCTC 2 cut(s) 345, 1017
SaqAI TTAA 6 cut(s) 551, 584, 653, 710, 983, 1281
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 8 cut(s) 321, 430, 459, 464, 745, 858, 964, 1243
Sau96I GGNCC 1 cut(s) 557
ScaI AGTACT 1 cut(s) 606
SchI GAGTC 2 cut(s) 205, 800
ScrFI CCNGG 5 cut(s) 221, 473, 474, 913, 999
SduI GDGCHC 2 cut(s) 345, 1017
SinI GGWCC 1 cut(s) 557
SmaI CCCGGG 1 cut(s) 474
SmlI CTYRAG 5 cut(s) 344, 353, 455, 820, 1016
SmoI CTYRAG 5 cut(s) 344, 353, 455, 820, 1016
Sse9I AATT 6 cut(s) 571, 685, 757, 949, 1145, 1278
SsiI CCGC 1 cut(s) 1134
SspI AATATT 1 cut(s) 1295
SspMI CTAG 7 cut(s) 401, 539, 780, 788, 908, 1095, 1152
SstI GAGCTC 2 cut(s) 345, 1017
StyD4I CCNGG 5 cut(s) 219, 471, 472, 911, 997
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 609
TaiI ACGT 2 cut(s) 601, 1116
TasI AATT 6 cut(s) 571, 685, 757, 949, 1145, 1278
TatI WGTACW 1 cut(s) 604
TfiI GAWTC 3 cut(s) 167, 802, 994
Tru1I TTAA 6 cut(s) 551, 584, 653, 710, 983, 1281
Tru9I TTAA 6 cut(s) 551, 584, 653, 710, 983, 1281
TscAI CASTG 2 cut(s) 324, 573
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 3 cut(s) 17, 299, 432
TspGWI ACGGA 1 cut(s) 1233
TspMI CCCGGG 1 cut(s) 472
TspRI CASTG 2 cut(s) 324, 573
VpaK11BI GGWCC 1 cut(s) 557
XapI RAATTY 4 cut(s) 571, 685, 949, 1145
XmaI CCCGGG 1 cut(s) 472
XmiI GTMKAC 1 cut(s) 645
XmnI GAANNNNTTC 1 cut(s) 888
XspI CTAG 7 cut(s) 401, 539, 780, 788, 908, 1095, 1152
ZrmI AGTACT 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.