Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

25893971 .. 25895056

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCTGGTTCTGTCTATAACCTTCCAAGTCAAAACCCTAATCCACAGTCTTTATTCCAAATCTTTGTTGATCGAGTACCACTTTCAAACTTGCCTGCCACGTCAGACGACTCTAGCCGGACTGCAGAAGATAATGAGAGGAAGCGGAGAAGGAAGGTATCGAACCGCGAGTCAGCTCGGAGATCGCGTATGCGGAAACAGCGTCACATGGAAGAACTGTGGTCCATGCTTGTTCAACTCATCAATAAGAACAAATCTCTAGTCGATGAGCTAAGCCAAGCCAGGGAATGTTACGAGAAGGTTATAGAAGAGAACATGAAACTTCGAGAGGAAAACTCCAAGTCGAGGAAGATGATTGGTGAGATCGGGCTTAATAGGTTTCTTAGCGTAGAGGCCGATCAGATCTGGACCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

138

Amino Acids

16.25

Weight (kDa)

9.6

Isoelectric Point (pI)

71.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	44 - 94	2.7e-07	Basic region leucine zipper
bZIP_1	PF00170	46 - 100	3.9e-10	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	168, 187
AciI	CCGC	3 cut(s)	145, 166, 193
AfaI	GTAC	1 cut(s)	78
AfiI	CCNNNNNNNGG	2 cut(s)	283, 345
AgsI	TTSAA	2 cut(s)	87, 236
AjiI	CACGTC	1 cut(s)	102
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	2 cut(s)	176, 271
AluI	AGCT	2 cut(s)	176, 271
AoxI	GGCC	1 cut(s)	393
ArsI	GACNNNNNNTTYG	4 cut(s)	155, 187, 246, 278
AspS9I	GGNCC	2 cut(s)	222, 408
AsuHPI	GGTGA	1 cut(s)	371
AvaII	GGWCC	2 cut(s)	222, 408
BciT130I	CCWGG	1 cut(s)	283
BfaI	CTAG	2 cut(s)	114, 260
BfmI	CTRYAG	1 cut(s)	123
BglII	AGATCT	1 cut(s)	402
BlpI	GCTNAGC	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	283
Bme18I	GGWCC	2 cut(s)	222, 408
BmgBI	CACGTC	1 cut(s)	102
BmgT120I	GGNCC	2 cut(s)	222, 408
BmrFI	CCNGG	1 cut(s)	283
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
Bpu1102I	GCTNAGC	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	282
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 345
BseBI	CCWGG	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	282
BseLI	CCNNNNNNNGG	2 cut(s)	283, 345
Bsh1236I	CGCG	2 cut(s)	168, 187
BshFI	GGCC	1 cut(s)	395
BsiSI	CCGG	1 cut(s)	118
BslI	CCNNNNNNNGG	2 cut(s)	283, 345
BsnI	GGCC	1 cut(s)	395
Bsp143I	GATC	5 cut(s)	70, 182, 363, 397, 402
Bsp1720I	GCTNAGC	1 cut(s)	272
BspACI	CCGC	3 cut(s)	145, 166, 193
BspANI	GGCC	1 cut(s)	395
BspFNI	CGCG	2 cut(s)	168, 187
BspMAI	CTGCAG	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	5 cut(s)	70, 182, 363, 397, 402
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	2 cut(s)	48, 219
Bst6I	CTCTTC	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	272, 383
BstFNI	CGCG	2 cut(s)	168, 187
BstKTI	GATC	5 cut(s)	73, 185, 366, 400, 405
BstMBI	GATC	5 cut(s)	70, 182, 363, 397, 402
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstNI	CCWGG	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	123
BstUI	CGCG	2 cut(s)	168, 187
BstX2I	RGATCY	1 cut(s)	402
BstYI	RGATCY	1 cut(s)	402
BsuRI	GGCC	1 cut(s)	395
BtrI	CACGTC	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	96
Cfr13I	GGNCC	2 cut(s)	222, 408
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	3 cut(s)	208, 226, 316
CviJI	RGCY	8 cut(s)	5, 117, 176, 271, 276, 281, 370, 395
CviKI_1	RGCY	8 cut(s)	5, 117, 176, 271, 276, 281, 370, 395
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	2 cut(s)	272, 383
DpnI	GATC	5 cut(s)	72, 184, 365, 399, 404
DpnII	GATC	5 cut(s)	70, 182, 363, 397, 402
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco47I	GGWCC	2 cut(s)	222, 408
EcoRII	CCWGG	1 cut(s)	281
FaeI	CATG	3 cut(s)	211, 229, 319
FaiI	YATR	6 cut(s)	18, 191, 209, 227, 305, 317
FatI	CATG	3 cut(s)	207, 225, 315
FspBI	CTAG	2 cut(s)	114, 260
HaeIII	GGCC	1 cut(s)	395
HapII	CCGG	1 cut(s)	118
HgaI	GACGC	1 cut(s)	191
Hin1II	CATG	3 cut(s)	211, 229, 319
HinfI	GANTC	2 cut(s)	110, 170
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	1 cut(s)	371
Hpy188I	TCNGA	3 cut(s)	106, 180, 402
Hpy188III	TCNNGA	2 cut(s)	326, 406
HpyAV	CCTTC	4 cut(s)	32, 144, 148, 292
HpyCH4III	ACNGT	2 cut(s)	48, 219
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	2 cut(s)	272, 383
HpySE526I	ACGT	1 cut(s)	101
Hsp92II	CATG	3 cut(s)	211, 229, 319
Kzo9I	GATC	5 cut(s)	70, 182, 363, 397, 402
LpnPI	CCDG	5 cut(s)	108, 131, 268, 295, 391
MaeI	CTAG	2 cut(s)	114, 260
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	2 cut(s)	203, 290
MalI	GATC	5 cut(s)	72, 184, 365, 399, 404
MboI	GATC	5 cut(s)	70, 182, 363, 397, 402
MboII	GAAGA	4 cut(s)	140, 224, 320, 361
MflI	RGATCY	1 cut(s)	402
MlyI	GAGTC	2 cut(s)	104, 179
MnlI	CCTC	4 cut(s)	132, 322, 339, 385
MseI	TTAA	1 cut(s)	372
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	283
MvnI	CGCG	2 cut(s)	168, 187
MwoI	GCNNNNNNNGC	1 cut(s)	199
NdeII	GATC	5 cut(s)	70, 182, 363, 397, 402
NlaIII	CATG	3 cut(s)	211, 229, 319
NmuCI	GTSAC	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	1 cut(s)	184
PleI	GAGTC	2 cut(s)	104, 178
PpsI	GAGTC	2 cut(s)	104, 178
Psp6I	CCWGG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	281
PspPI	GGNCC	2 cut(s)	222, 408
PstI	CTGCAG	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	402
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	372
Sau3AI	GATC	5 cut(s)	70, 182, 363, 397, 402
Sau96I	GGNCC	2 cut(s)	222, 408
SchI	GAGTC	2 cut(s)	104, 179
ScrFI	CCNGG	1 cut(s)	283
SetI	ASST	8 cut(s)	24, 104, 159, 178, 273, 303, 380, 413
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	2 cut(s)	222, 408
SsiI	CCGC	3 cut(s)	145, 166, 193
SspMI	CTAG	2 cut(s)	114, 260
StyD4I	CCNGG	1 cut(s)	281
TaaI	ACNGT	2 cut(s)	48, 219
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	5 cut(s)	73, 161, 264, 325, 344
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TseFI	GTSAC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	332
VpaK11BI	GGWCC	2 cut(s)	222, 408
XspI	CTAG	2 cut(s)	114, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.