AT1G72460
NAC Family

inactive leucine-rich repeat receptor-like protein kinase At5g20690

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
N/A
Physical Location & Seq
Forward (+)
27279341 .. 27281830
2490 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72460.1

Sequence Viewer

Length: 1935 bp
ATGGCCGTGGCTTGGCTAATCTGGCCAATCGTGCTATCTCTAACAGCACTTTCTGCGAATTCGATAACCGAATCAGAATCTTTATTGAAATTCAAGAAGTCCTTAAACAACACCAAGTCTCTTGATTCTTGGACACCAGAGTCAGAACCTTGTGGAGCAAGCCAACGATGGATCGGATTACTCTGCAACAAAAACTCTGTCTTTGGCCTCCAGATCGAACAAATGGGTCTATCAGGAAAAGTTGATGTCGCTCCGTTAAAAGACCTACCATCTTTACGCACCATAAGCATAATGAACAACTCTTTCTCTGGTGACATACCCGAGTTTAACAGATTAACCGCTCTGAAGTCGCTTTACATATCAGGAAATCGATTCTCTGGTAACATTCCTTCTGATTATTTCGAAACAATGGTGTCGCTAAAGAAAGCTTGGCTGTCAAACAACCATTTCTCTGGTCTCATTCCTATCTCATTGGCAACTACATTGCCAAATCTCATTGAGTTACGCCTCGAAAATAATCAATTCATCGGGAGTATACCTAATTTCACACAAACGACTTTAGCTATTGTTGATCTATCAAACAACCAACTAACCGGAGAAATACCTCCCGGTTTGTTGAAATTCGACGCGAAGACTTTTGCGGGGAATTCTGGCCTTTGCGGTGCCAAGCTATCCACTCCATGCCCACAACCAAAAAATTCGACTGCATCCATAACGATAGAAGGAACAATGAAAGATGCAAATAAGAGCAAATACTTTCTAGCATTCAGCACATTAGGAGTGCTTCTTATCGTCGTCCTTGTCTCCTTAGCTTTCAGAAAAAAGAAAAAGAAGAGACGGAGGAAGAAGGCACGTCGTACCTCTGAACAAGACAATAGTGACGACCAACAAATTCAGGTAACTGTTGAGGGATCAAATAGCTCAAGGCAGAGTAGGAGCAGTCGGTCCGGCGAATTGAATAAAGGAGTGGCGGGGACATCAGACCTAGTTATGGTGAACAAGGAAAAAGGTGTTTTCCGTTTATCAGACTTGATGAAAGCGGCGGCTCACGTGCTTGGTAATCCCGGCGGTGGAAGCAACCGTCCAAGAAGTAGCGGAGGCGTGGGATCTGCCTACAAAGCGGTTCTTTCAAACGGTGTCACGGTAGTGGTGAAACGTGTGACGGTAATGAATCAAGTGAGTGTTGACGTATTCGACAAGGAGATTAGGAAACTAGGAAGCTTGCAACACAAGAACGTATTAACGCCCCTAGCTTACCATTTCCGACAAGACGAGAAATTGCTAGTGTTCGAATTTGTTCCTAATTTGAATTTGCTTCACCGATTACACGGAGACCACGAAGAATTTCAATTAGATTGGCCTTCTCGACTCAAAATCATTCAAGGAATCGCTAGGGGAATGTGGTATCTCCATAGAGAATTAGGGTTTCTAAACCTACCACATGGAAACCTAAAATCAAGCAATATATTTCTTGCGGAAGACGGCGAGCCACTCATCTCCGAATTTGGACTTCAAAAACTAATCAATCCCGACGCTCAATCTCAATCTCTCGTCGCGTTTAAATCTCCAGAAGCGGATCGTGATGGAACCGTCTCTGCGAAATCTGATGTATTTAGTTTCGGAGTCGTGGTACTTGAGATCTTGACCGGAAAATTCCCGTCTCAATACGCTGGTTTGAACAGAGCCGGTGGGGCAAATTTGGTTGAGTGGTTAGGCTCCGCATTGGAACAAGGTGGTTGGATGGATCTGCTTCATCCGATGGTGGTAACCGCCGCCGCTGAAGATAAAATTATGGAGGAGGAAATTGAGAACGTTTTAAGGATCGGTGTGAGATGTACCAGAGAAGATCCAGATCAGAGACCGAATATGACTGAAGTCGTTGATGAACTGACTATTGAAGATTCTAACGACGACTTTATCACCATAGAAACTTAG

Protein Analysis

644

Amino Acids

70.79

Weight (kDa)

8.1

Isoelectric Point (pI)

40.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 23 - 63 2.5e-06 Leucine rich repeat N-terminal domain
Pkinase PF00069 365 - 628 4.2e-24 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 366 - 630 3.3e-29 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 139
AccB1I GGYRCC 1 cut(s) 662
AccBSI CCGCTC 1 cut(s) 341
AccI GTMKAC 1 cut(s) 535
AccII CGCG 2 cut(s) 629, 1556
AclI AACGTT 1 cut(s) 1812
AclWI GGATC 7 cut(s) 179, 919, 1114, 1584, 1752, 1829, 1841
AcoI YGGCCR 2 cut(s) 3, 23
AcuI CTGAAG 3 cut(s) 365, 1800, 1893
AcvI CACGTG 1 cut(s) 1051
AfaI GTAC 3 cut(s) 859, 1632, 1837
AfiI CCNNNNNNNGG 3 cut(s) 12, 991, 1070
AflIII ACRYGT 1 cut(s) 1156
AjiI CACGTC 1 cut(s) 854
AleI CACNNNNGTG 1 cut(s) 1145
AluBI AGCT 7 cut(s) 428, 563, 670, 812, 921, 1221, 1253
AluI AGCT 7 cut(s) 428, 563, 670, 812, 921, 1221, 1253
Alw26I GTCTC 8 cut(s) 123, 461, 808, 829, 1326, 1597, 1665, 1852
AlwI GGATC 7 cut(s) 179, 919, 1114, 1584, 1752, 1829, 1841
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 5 cut(s) 3, 23, 205, 652, 1358
ArsI GACNNNNNNTTYG 2 cut(s) 183, 215
Asp700I GAANNNNTTC 2 cut(s) 1296, 1344
AspS9I GGNCC 1 cut(s) 945
AsuC2I CCSGG 2 cut(s) 609, 1065
AsuHPI GGTGA 5 cut(s) 323, 1006, 1162, 1310, 1912
AsuII TTCGAA 2 cut(s) 402, 1290
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 1 cut(s) 945
BalI TGGCCA 1 cut(s) 25
BanI GGYRCC 1 cut(s) 662
BarI GAAGNNNNNNTAC 4 cut(s) 338, 370, 373, 405
BbrPI CACGTG 1 cut(s) 1051
BbsI GAAGAC 2 cut(s) 638, 1485
BccI CCATC 5 cut(s) 162, 277, 1577, 1735, 1753
BceAI ACGGC 1 cut(s) 1498
BcnI CCSGG 2 cut(s) 609, 1065
BcoDI GTCTC 8 cut(s) 123, 461, 808, 829, 1326, 1597, 1665, 1852
BfaI CTAG 6 cut(s) 761, 986, 1214, 1250, 1283, 1392
BglI GCCNNNNNGGC 1 cut(s) 1691
BglII AGATCT 1 cut(s) 1638
BisI GCNGC 4 cut(s) 1041, 1044, 1773, 1776
BlsI GCNGC 4 cut(s) 1042, 1045, 1774, 1777
Bme1390I CCNGG 2 cut(s) 609, 1065
Bme18I GGWCC 1 cut(s) 945
BmeT110I CYCGRG 1 cut(s) 320
BmgBI CACGTC 1 cut(s) 854
BmgT120I GGNCC 1 cut(s) 945
BmiI GGNNCC 3 cut(s) 664, 1588, 1717
BmrFI CCNGG 2 cut(s) 609, 1065
BmsI GCATC 2 cut(s) 716, 727
BoxI GACNNNNGTC 1 cut(s) 1874
BpiI GAAGAC 2 cut(s) 638, 1485
BpmI CTGGAG 2 cut(s) 194, 1551
Bpu10I CCTNAGC 1 cut(s) 808
Bpu14I TTCGAA 2 cut(s) 402, 1290
BpuEI CTTGAG 2 cut(s) 907, 1655
BpuMI CCSGG 2 cut(s) 609, 1065
Bsa29I ATCGAT 1 cut(s) 370
BsaAI YACGTR 1 cut(s) 1051
BsaBI GATNNNNATC 1 cut(s) 1851
BsaI GGTCTC 3 cut(s) 461, 1326, 1852
BsaJI CCNNGG 1 cut(s) 6
BsaWI WCCGGW 2 cut(s) 593, 1646
BsaXI ACNNNNNCTCC 2 cut(s) 1614, 1644
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 991, 1070
Bse118I RCCGGY 1 cut(s) 1685
Bse3DI GCAATG 1 cut(s) 482
Bse8I GATNNNNATC 1 cut(s) 1851
BseCI ATCGAT 1 cut(s) 370
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 3 cut(s) 707, 1746, 1753
BseJI GATNNNNATC 1 cut(s) 1851
BseLI CCNNNNNNNGG 3 cut(s) 12, 991, 1070
BseMI GCAATG 1 cut(s) 482
BseRI GAGGAG 1 cut(s) 1811
Bsh1236I CGCG 2 cut(s) 629, 1556
BshFI GGCC 5 cut(s) 5, 25, 207, 654, 1360
BshNI GGYRCC 1 cut(s) 662
BshVI ATCGAT 1 cut(s) 370
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 6 cut(s) 594, 609, 948, 1065, 1647, 1686
BslFI GGGAC 1 cut(s) 988
BslI CCNNNNNNNGG 3 cut(s) 12, 991, 1070
BsmAI GTCTC 8 cut(s) 123, 461, 808, 829, 1326, 1597, 1665, 1852
BsmBI CGTCTC 3 cut(s) 829, 1597, 1665
BsmFI GGGAC 1 cut(s) 988
BsmI GAATGC 1 cut(s) 764
BsnI GGCC 5 cut(s) 5, 25, 207, 654, 1360
Bso31I GGTCTC 3 cut(s) 461, 1326, 1852
BsoBI CYCGRG 1 cut(s) 320
Bsp119I TTCGAA 2 cut(s) 402, 1290
BspANI GGCC 5 cut(s) 5, 25, 207, 654, 1360
BspDI ATCGAT 1 cut(s) 370
BspFNI CGCG 2 cut(s) 629, 1556
BspLI GGNNCC 3 cut(s) 664, 1588, 1717
BspPI GGATC 7 cut(s) 179, 919, 1114, 1584, 1752, 1829, 1841
BspT104I TTCGAA 2 cut(s) 402, 1290
BspT107I GGYRCC 1 cut(s) 662
BspTNI GGTCTC 3 cut(s) 461, 1326, 1852
BsrBI CCGCTC 1 cut(s) 341
BsrDI GCAATG 1 cut(s) 482
BsrFI RCCGGY 1 cut(s) 1685
BssAI RCCGGY 1 cut(s) 1685
BssECI CCNNGG 1 cut(s) 6
BssNAI GTATAC 1 cut(s) 536
Bst1107I GTATAC 1 cut(s) 536
Bst4CI ACNGT 6 cut(s) 904, 1082, 1136, 1144, 1165, 1591
Bst6I CTCTTC 1 cut(s) 827
BstAPI GCANNNNNTGC 1 cut(s) 53
BstBAI YACGTR 1 cut(s) 1051
BstBI TTCGAA 2 cut(s) 402, 1290
BstC8I GCNNGC 3 cut(s) 160, 1223, 1487
BstDEI CTNAG 2 cut(s) 808, 1932
BstDSI CCRYGG 1 cut(s) 6
BstEII GGTNACC 1 cut(s) 1765
BstF5I GGATG 3 cut(s) 707, 1746, 1753
BstFNI CGCG 2 cut(s) 629, 1556
BstMAI GTCTC 8 cut(s) 123, 461, 808, 829, 1326, 1597, 1665, 1852
BstMWI GCNNNNNNNGC 7 cut(s) 22, 31, 53, 285, 1074, 1118, 1691
BstPAI GACNNNNGTC 1 cut(s) 1874
BstPI GGTNACC 1 cut(s) 1765
BstSCI CCNGG 2 cut(s) 607, 1063
BstUI CGCG 2 cut(s) 629, 1556
BstV2I GAAGAC 2 cut(s) 638, 1485
BstX2I RGATCY 4 cut(s) 1106, 1638, 1744, 1846
BstXI CCANNNNNNTGG 1 cut(s) 452
BstYI RGATCY 4 cut(s) 1106, 1638, 1744, 1846
BstZ17I GTATAC 1 cut(s) 536
Bsu15I ATCGAT 1 cut(s) 370
BsuRI GGCC 5 cut(s) 5, 25, 207, 654, 1360
BsuTUI ATCGAT 1 cut(s) 370
BtgI CCRYGG 1 cut(s) 6
BtrI CACGTC 1 cut(s) 854
BtsCI GGATG 3 cut(s) 707, 1746, 1753
Cac8I GCNNGC 3 cut(s) 160, 1223, 1487
Cfr10I RCCGGY 1 cut(s) 1685
Cfr13I GGNCC 1 cut(s) 945
ClaI ATCGAT 1 cut(s) 370
CpoI CGGWCCG 1 cut(s) 945
CseI GACGC 2 cut(s) 635, 1541
Csp6I GTAC 3 cut(s) 858, 1631, 1836
CspI CGGWCCG 1 cut(s) 945
CviAII CATG 2 cut(s) 681, 1442
CviQI GTAC 3 cut(s) 858, 1631, 1836
DdeI CTNAG 2 cut(s) 808, 1932
DraI TTTAAA 1 cut(s) 1561
DrdI GACNNNNNNGTC 1 cut(s) 139
DseDI GACNNNNNNGTC 1 cut(s) 139
EaeI YGGCCR 2 cut(s) 3, 23
Eam1104I CTCTTC 1 cut(s) 827
EarI CTCTTC 1 cut(s) 827
Eco31I GGTCTC 3 cut(s) 461, 1326, 1852
Eco47I GGWCC 1 cut(s) 945
Eco57I CTGAAG 3 cut(s) 365, 1800, 1893
Eco72I CACGTG 1 cut(s) 1051
Eco88I CYCGRG 1 cut(s) 320
Eco91I GGTNACC 1 cut(s) 1765
EcoO65I GGTNACC 1 cut(s) 1765
EcoRI GAATTC 2 cut(s) 58, 646
Esp3I CGTCTC 3 cut(s) 829, 1597, 1665
FaeI CATG 2 cut(s) 684, 1445
FalI AAGNNNNNCTT 4 cut(s) 86, 118, 1110, 1142
FaqI GGGAC 1 cut(s) 988
FatI CATG 2 cut(s) 680, 1441
FauI CCCGC 2 cut(s) 634, 964
FblI GTMKAC 1 cut(s) 535
Fnu4HI GCNGC 4 cut(s) 1041, 1044, 1773, 1776
FokI GGATG 3 cut(s) 694, 1740, 1753
Fsp4HI GCNGC 4 cut(s) 1041, 1044, 1773, 1776
FspBI CTAG 6 cut(s) 761, 986, 1214, 1250, 1283, 1392
GluI GCNGC 4 cut(s) 1041, 1044, 1773, 1776
GsuI CTGGAG 2 cut(s) 194, 1551
HaeIII GGCC 5 cut(s) 5, 25, 207, 654, 1360
HapII CCGG 6 cut(s) 594, 609, 948, 1065, 1647, 1686
HgaI GACGC 2 cut(s) 635, 1541
Hin1II CATG 2 cut(s) 684, 1445
HincII GTYRAC 1 cut(s) 1186
HindII GTYRAC 1 cut(s) 1186
HindIII AAGCTT 2 cut(s) 426, 1219
HpaII CCGG 6 cut(s) 594, 609, 948, 1065, 1647, 1686
HphI GGTGA 5 cut(s) 323, 1006, 1162, 1310, 1912
Hpy166II GTNNAC 3 cut(s) 536, 997, 1186
Hpy8I GTNNAC 3 cut(s) 536, 997, 1186
Hpy99I CGWCG 6 cut(s) 629, 797, 858, 1535, 1556, 1913
HpyAV CCTTC 4 cut(s) 399, 716, 841, 1371
HpyCH4III ACNGT 6 cut(s) 904, 1082, 1136, 1144, 1165, 1591
HpyCH4IV ACGT 6 cut(s) 853, 1050, 1156, 1188, 1236, 1812
HpyCH4V TGCA 4 cut(s) 186, 707, 740, 1225
HpyF10VI GCNNNNNNNGC 7 cut(s) 22, 31, 53, 285, 1074, 1118, 1691
HpyF3I CTNAG 2 cut(s) 808, 1932
HpySE526I ACGT 6 cut(s) 853, 1050, 1156, 1188, 1236, 1812
Hsp92II CATG 2 cut(s) 684, 1445
LmnI GCTCC 4 cut(s) 155, 256, 936, 1721
LweI GCATC 2 cut(s) 716, 727
MaeI CTAG 6 cut(s) 761, 986, 1214, 1250, 1283, 1392
MaeII ACGT 6 cut(s) 853, 1050, 1156, 1188, 1236, 1812
MaeIII GTNAC 8 cut(s) 311, 380, 501, 878, 898, 1138, 1159, 1765
MbiI CCGCTC 1 cut(s) 341
MboII GAAGA 8 cut(s) 643, 844, 856, 1352, 1490, 1793, 1856, 1910
MflI RGATCY 4 cut(s) 1106, 1638, 1744, 1846
MlsI TGGCCA 1 cut(s) 25
MluNI TGGCCA 1 cut(s) 25
MlyI GAGTC 3 cut(s) 149, 1362, 1632
MmeI TCCRAC 2 cut(s) 1288, 1718
MnlI CCTC 9 cut(s) 218, 518, 615, 834, 871, 901, 1091, 1789, 1792
Mox20I TGGCCA 1 cut(s) 25
MroXI GAANNNNTTC 2 cut(s) 1296, 1344
MscI TGGCCA 1 cut(s) 25
MseI TTAA 7 cut(s) 104, 257, 327, 335, 1241, 1560, 1817
MslI CAYNNNNRTG 1 cut(s) 1145
Msp20I TGGCCA 1 cut(s) 25
MspA1I CMGCKG 1 cut(s) 1778
MspI CCGG 6 cut(s) 594, 609, 948, 1065, 1647, 1686
MspR9I CCNGG 2 cut(s) 609, 1065
Mva1269I GAATGC 1 cut(s) 764
MvnI CGCG 2 cut(s) 629, 1556
MwoI GCNNNNNNNGC 7 cut(s) 22, 31, 53, 285, 1074, 1118, 1691
NciI CCSGG 2 cut(s) 609, 1065
NlaIII CATG 2 cut(s) 684, 1445
NlaIV GGNNCC 3 cut(s) 664, 1588, 1717
NmuCI GTSAC 4 cut(s) 311, 878, 1138, 1159
NspV TTCGAA 2 cut(s) 402, 1290
OliI CACNNNNGTG 1 cut(s) 1145
PcsI WCGNNNNNNNCGW 1 cut(s) 1335
PctI GAATGC 1 cut(s) 764
PdmI GAANNNNTTC 2 cut(s) 1296, 1344
PfeI GAWTC 7 cut(s) 71, 77, 125, 372, 1171, 1386, 1901
PkrI GCNGC 4 cut(s) 1042, 1045, 1774, 1777
PleI GAGTC 3 cut(s) 148, 1362, 1631
PmaCI CACGTG 1 cut(s) 1051
PmlI CACGTG 1 cut(s) 1051
PpsI GAGTC 3 cut(s) 148, 1362, 1631
Ppu21I YACGTR 1 cut(s) 1051
PshAI GACNNNNGTC 1 cut(s) 1874
Psp1406I AACGTT 1 cut(s) 1812
PspCI CACGTG 1 cut(s) 1051
PspEI GGTNACC 1 cut(s) 1765
PspN4I GGNNCC 3 cut(s) 664, 1588, 1717
PspPI GGNCC 1 cut(s) 945
PsuI RGATCY 4 cut(s) 1106, 1638, 1744, 1846
RsaI GTAC 3 cut(s) 859, 1632, 1837
RsaNI GTAC 3 cut(s) 858, 1631, 1836
RseI CAYNNNNRTG 1 cut(s) 1145
Rsr2I CGGWCCG 1 cut(s) 945
RsrII CGGWCCG 1 cut(s) 945
SaqAI TTAA 7 cut(s) 104, 257, 327, 335, 1241, 1560, 1817
SatI GCNGC 4 cut(s) 1041, 1044, 1773, 1776
Sau96I GGNCC 1 cut(s) 945
SchI GAGTC 3 cut(s) 149, 1362, 1632
ScrFI CCNGG 2 cut(s) 609, 1065
SfaNI GCATC 2 cut(s) 716, 727
SfuI TTCGAA 2 cut(s) 402, 1290
SinI GGWCC 1 cut(s) 945
SmiMI CAYNNNNRTG 1 cut(s) 1145
SmlI CTYRAG 2 cut(s) 922, 1634
SmoI CTYRAG 2 cut(s) 922, 1634
SspMI CTAG 6 cut(s) 761, 986, 1214, 1250, 1283, 1392
StyD4I CCNGG 2 cut(s) 607, 1063
TaaI ACNGT 6 cut(s) 904, 1082, 1136, 1144, 1165, 1591
TaiI ACGT 6 cut(s) 856, 1053, 1159, 1191, 1239, 1815
TaqII GACCGA 2 cut(s) 933, 1876
TauI GCSGC 4 cut(s) 1043, 1046, 1775, 1778
TfiI GAWTC 7 cut(s) 71, 77, 125, 372, 1171, 1386, 1901
Tru1I TTAA 7 cut(s) 104, 257, 327, 335, 1241, 1560, 1817
Tru9I TTAA 7 cut(s) 104, 257, 327, 335, 1241, 1560, 1817
TseFI GTSAC 4 cut(s) 311, 878, 1138, 1159
Tsp45I GTSAC 4 cut(s) 311, 878, 1138, 1159
TspDTI ATGAA 7 cut(s) 308, 514, 746, 1049, 1184, 1742, 1899
TspGWI ACGGA 4 cut(s) 243, 853, 1007, 1344
VpaK11BI GGWCC 1 cut(s) 945
XmiI GTMKAC 1 cut(s) 535
XmnI GAANNNNTTC 2 cut(s) 1296, 1344
XspI CTAG 6 cut(s) 761, 986, 1214, 1250, 1283, 1392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.