AT1G74080
MYB Family

Transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
N/A
Physical Location & Seq
Forward (+)
27855578 .. 27857598
2021 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G74080.1

Sequence Viewer

Length: 1002 bp
ATGGTACGGACGCCGTGTTGTAGAGCAGAAGGGTTGAAGAAAGGAGCATGGACTCAAGAAGAAGACCAAAAGCTTATCGCCTATGTTCAACGACATGGTGAAGGCGGTTGGCGAACCCTTCCGGACAAAGCTGGACTCAAAAGATGTGGCAAAAGCTGCAGATTGAGATGGGCGAATTACTTAAGACCTGACATTAAACGTGGAGAGTTTAGCCAAGACGAGGAAGATTCCATCATCAACCTCCACGCCATTCATGGCAACAAATGGTCGGCCATAGCTCGTAAAATACCAAGAAGAACAGACAATGAGATCAAGAACCATTGGAACACTCACATCAAGAAATGTCTGGTCAAGAAAGGTATTGATCCGTTGACCCACAAATCCCTTCTCGATGGAGCCGGTAAATCATCTGACCATTCCGCGCATCCCGAGAAAAGCAGCGTTCATGACGACAAAGATGATCAGAATTCAAATAACAAAAAGTTGTCAGGATCATCATCAGCTCGGTTTTTGAACAGAGTAGCAAACAGATTCGGTCATAGAATCAACCACAATGTTCTGTCTGATATTATTGGAAGTAATGGCCTACTTACTAGTCACACTACTCCAACTACAAGTGTTTCAGAAGGTGAGAGGTCAACGAGTTCTTCCTCCACACATACCTCTTCGAATCTCCCCATCAACCGTAGCATAACCGTTGATGCAACATCTCTATCCTCATCCACGTTCTCTGACTCCCCCGACCCGTGTTTATACGAGGAAATAGTCGGTGACATTGAAGATATGACGAGATTTTCATCAAGATGTTTGAGTCATGTTTTATCTCATGAAGATTTATTGATGTCCGTTGAGTCTTGTTTGGAGAATACTTCATTCATGAGGGAAATTACAATGATCTTTCAAGAGGATAAAATCGAGACGACGTCGTTTAATGATAGCTACGTGACGCCGATCAATGAAGTTGATGACTCCTGTGAAGGGATTGACAATTATTTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000162 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0002213 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006082 GO:0006109 GO:0006355 GO:0006357 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009267 GO:0009308 GO:0009309 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009759 GO:0009819 GO:0009867 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010104 GO:0010105 GO:0010438 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010675 GO:0014070 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023051 GO:0023052 GO:0023057 GO:0030054 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0031930 GO:0032502 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042343 GO:0042401 GO:0042430 GO:0042435 GO:0042493 GO:0042545 GO:0042594 GO:0042742 GO:0042762 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043436 GO:0043455 GO:0043565 GO:0044106 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0045087 GO:0045229 GO:0045893 GO:0045935 GO:0046219 GO:0046394 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0055044 GO:0060255 GO:0062012 GO:0065007 GO:0065009 GO:0070297 GO:0070298 GO:0070727 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071496 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1900376 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:1902680 GO:1903506 GO:1903508 GO:1905255 GO:2000070 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

333

Amino Acids

37.25

Weight (kDa)

6.31

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 1.4e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 111 3e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 113 2.6e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 926
AccII CGCG 1 cut(s) 422
AccIII TCCGGA 1 cut(s) 121
AciI CCGC 2 cut(s) 105, 420
AclWI GGATC 2 cut(s) 359, 499
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 1 cut(s) 466
AcyI GRCGYC 3 cut(s) 11, 923, 947
AfaI GTAC 1 cut(s) 6
AfiI CCNNNNNNNGG 2 cut(s) 220, 978
AflII CTTAAG 1 cut(s) 181
AgsI TTSAA 6 cut(s) 37, 89, 471, 514, 779, 902
AhlI ACTAGT 1 cut(s) 593
AluBI AGCT 6 cut(s) 73, 131, 156, 278, 503, 939
AluI AGCT 6 cut(s) 73, 131, 156, 278, 503, 939
Alw26I GTCTC 1 cut(s) 911
AlwI GGATC 2 cut(s) 359, 499
Ama87I CYCGRG 1 cut(s) 428
Aor13HI TCCGGA 1 cut(s) 121
AoxI GGCC 2 cut(s) 270, 583
ApeKI GCWGC 2 cut(s) 156, 438
ApoI RAATTY 1 cut(s) 466
ArsI GACNNNNNNTTYG 1 cut(s) 977
AspLEI GCGC 1 cut(s) 424
AsuHPI GGTGA 3 cut(s) 110, 641, 782
AsuII TTCGAA 1 cut(s) 668
AvaI CYCGRG 1 cut(s) 428
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 143, 450
BccI CCATC 4 cut(s) 162, 239, 386, 686
BclI TGATCA 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 911
BcuI ACTAGT 1 cut(s) 593
BfaI CTAG 1 cut(s) 594
BfmI CTRYAG 1 cut(s) 157
BfrI CTTAAG 1 cut(s) 181
BisI GCNGC 2 cut(s) 157, 439
BlsI GCNGC 2 cut(s) 158, 440
BmeT110I CYCGRG 1 cut(s) 428
BmiI GGNNCC 1 cut(s) 397
BmsI GCATC 2 cut(s) 433, 691
BpiI GAAGAC 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 668
BpuEI CTTGAG 1 cut(s) 39
BsaAI YACGTR 1 cut(s) 943
BsaBI GATNNNNATC 2 cut(s) 496, 796
BsaHI GRCGYC 3 cut(s) 11, 923, 947
BsaWI WCCGGW 1 cut(s) 121
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 978
Bse118I RCCGGY 1 cut(s) 398
Bse8I GATNNNNATC 2 cut(s) 496, 796
BseAI TCCGGA 1 cut(s) 121
BseGI GGATG 2 cut(s) 424, 719
BseJI GATNNNNATC 2 cut(s) 496, 796
BseLI CCNNNNNNNGG 2 cut(s) 220, 978
BseXI GCAGC 2 cut(s) 143, 450
Bsh1236I CGCG 1 cut(s) 422
BshFI GGCC 2 cut(s) 272, 585
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 2 cut(s) 122, 399
BslI CCNNNNNNNGG 2 cut(s) 220, 978
BsmAI GTCTC 1 cut(s) 911
BsmBI CGTCTC 1 cut(s) 911
BsnI GGCC 2 cut(s) 272, 585
BsoBI CYCGRG 1 cut(s) 428
Bsp119I TTCGAA 1 cut(s) 668
Bsp13I TCCGGA 1 cut(s) 121
Bsp143I GATC 6 cut(s) 309, 364, 460, 491, 894, 951
BspACI CCGC 2 cut(s) 105, 420
BspANI GGCC 2 cut(s) 272, 585
BspEI TCCGGA 1 cut(s) 121
BspFNI CGCG 1 cut(s) 422
BspHI TCATGA 3 cut(s) 445, 826, 876
BspLI GGNNCC 1 cut(s) 397
BspMAI CTGCAG 1 cut(s) 161
BspPI GGATC 2 cut(s) 359, 499
BspT104I TTCGAA 1 cut(s) 668
BspTI CTTAAG 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 398
BssAI RCCGGY 1 cut(s) 398
BssMI GATC 6 cut(s) 309, 364, 460, 491, 894, 951
BssNI GRCGYC 3 cut(s) 11, 923, 947
Bst4CI ACNGT 2 cut(s) 686, 697
Bst6I CTCTTC 1 cut(s) 670
BstACI GRCGYC 3 cut(s) 11, 923, 947
BstAFI CTTAAG 1 cut(s) 181
BstAPI GCANNNNNTGC 1 cut(s) 156
BstBAI YACGTR 1 cut(s) 943
BstBI TTCGAA 1 cut(s) 668
BstF5I GGATG 2 cut(s) 424, 719
BstFNI CGCG 1 cut(s) 422
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 6 cut(s) 312, 367, 463, 494, 897, 954
BstMAI GTCTC 1 cut(s) 911
BstMBI GATC 6 cut(s) 309, 364, 460, 491, 894, 951
BstMWI GCNNNNNNNGC 1 cut(s) 156
BstSFI CTRYAG 1 cut(s) 157
BstUI CGCG 1 cut(s) 422
BstV1I GCAGC 2 cut(s) 143, 450
BstV2I GAAGAC 1 cut(s) 69
BsuRI GGCC 2 cut(s) 272, 585
BtsCI GGATG 2 cut(s) 424, 719
CciI TCATGA 3 cut(s) 445, 826, 876
CfoI GCGC 1 cut(s) 424
Cfr10I RCCGGY 1 cut(s) 398
CseI GACGC 2 cut(s) 19, 955
Csp6I GTAC 1 cut(s) 5
CspCI CAANNNNNGTGG 2 cut(s) 127, 162
CviAII CATG 7 cut(s) 48, 95, 254, 446, 815, 827, 877
CviQI GTAC 1 cut(s) 5
DpnI GATC 6 cut(s) 311, 366, 462, 493, 896, 953
DpnII GATC 6 cut(s) 309, 364, 460, 491, 894, 951
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 670
EarI CTCTTC 1 cut(s) 670
Eco88I CYCGRG 1 cut(s) 428
EcoRI GAATTC 1 cut(s) 466
Esp3I CGTCTC 1 cut(s) 911
FaeI CATG 7 cut(s) 51, 98, 257, 449, 818, 830, 880
FatI CATG 7 cut(s) 47, 94, 253, 445, 814, 826, 876
FbaI TGATCA 1 cut(s) 460
Fnu4HI GCNGC 2 cut(s) 157, 439
FokI GGATG 2 cut(s) 411, 706
Fsp4HI GCNGC 2 cut(s) 157, 439
FspBI CTAG 1 cut(s) 594
GlaI GCGC 1 cut(s) 423
GluI GCNGC 2 cut(s) 157, 439
HaeIII GGCC 2 cut(s) 272, 585
HapII CCGG 2 cut(s) 122, 399
HgaI GACGC 2 cut(s) 19, 955
HhaI GCGC 1 cut(s) 424
Hin1I GRCGYC 3 cut(s) 11, 923, 947
Hin1II CATG 7 cut(s) 51, 98, 257, 449, 818, 830, 880
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HincII GTYRAC 2 cut(s) 372, 639
HindII GTYRAC 2 cut(s) 372, 639
HindIII AAGCTT 1 cut(s) 71
HpaII CCGG 2 cut(s) 122, 399
HphI GGTGA 3 cut(s) 110, 641, 782
Hpy166II GTNNAC 2 cut(s) 372, 639
Hpy188I TCNGA 5 cut(s) 412, 465, 565, 625, 733
Hpy8I GTNNAC 2 cut(s) 372, 639
Hpy99I CGWCG 2 cut(s) 925, 928
HpyAV CCTTC 6 cut(s) 23, 95, 128, 395, 620, 971
HpyCH4III ACNGT 2 cut(s) 686, 697
HpyCH4IV ACGT 4 cut(s) 199, 725, 923, 942
HpyCH4V TGCA 2 cut(s) 159, 704
HpyF10VI GCNNNNNNNGC 1 cut(s) 156
HpySE526I ACGT 4 cut(s) 199, 725, 923, 942
Hsp92I GRCGYC 3 cut(s) 11, 923, 947
Hsp92II CATG 7 cut(s) 51, 98, 257, 449, 818, 830, 880
HspAI GCGC 1 cut(s) 422
Kpn2I TCCGGA 1 cut(s) 121
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 6 cut(s) 309, 364, 460, 491, 894, 951
LmnI GCTCC 2 cut(s) 44, 395
LpnPI CCDG 7 cut(s) 117, 135, 201, 332, 412, 474, 985
Lsp1109I GCAGC 2 cut(s) 143, 450
LweI GCATC 2 cut(s) 433, 691
MaeI CTAG 1 cut(s) 594
MaeII ACGT 4 cut(s) 199, 725, 923, 942
MaeIII GTNAC 3 cut(s) 596, 770, 943
MalI GATC 6 cut(s) 311, 366, 462, 493, 896, 953
MboI GATC 6 cut(s) 309, 364, 460, 491, 894, 951
MboII GAAGA 9 cut(s) 49, 71, 74, 236, 306, 639, 657, 791, 842
MluCI AATT 4 cut(s) 175, 466, 885, 988
MlyI GAGTC 6 cut(s) 46, 129, 728, 820, 860, 962
MmeI TCCRAC 1 cut(s) 632
MnlI CCTC 9 cut(s) 214, 251, 627, 661, 673, 727, 751, 873, 898
MroI TCCGGA 1 cut(s) 121
MseI TTAA 3 cut(s) 182, 195, 930
MslI CAYNNNNRTG 1 cut(s) 802
MspCI CTTAAG 1 cut(s) 181
MspI CCGG 2 cut(s) 122, 399
MvnI CGCG 1 cut(s) 422
MwoI GCNNNNNNNGC 1 cut(s) 156
NdeII GATC 6 cut(s) 309, 364, 460, 491, 894, 951
NlaIII CATG 7 cut(s) 51, 98, 257, 449, 818, 830, 880
NlaIV GGNNCC 1 cut(s) 397
NmuCI GTSAC 3 cut(s) 596, 770, 943
NspV TTCGAA 1 cut(s) 668
PagI TCATGA 3 cut(s) 445, 826, 876
PfeI GAWTC 4 cut(s) 227, 531, 543, 670
PflFI GACNNNGTC 1 cut(s) 922
PkrI GCNGC 2 cut(s) 158, 440
PleI GAGTC 6 cut(s) 46, 129, 728, 819, 859, 962
PpsI GAGTC 6 cut(s) 46, 129, 728, 819, 859, 962
Ppu21I YACGTR 1 cut(s) 943
PspN4I GGNNCC 1 cut(s) 397
PstI CTGCAG 1 cut(s) 161
PsyI GACNNNGTC 1 cut(s) 922
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
RseI CAYNNNNRTG 1 cut(s) 802
SaqAI TTAA 3 cut(s) 182, 195, 930
SatI GCNGC 2 cut(s) 157, 439
Sau3AI GATC 6 cut(s) 309, 364, 460, 491, 894, 951
SchI GAGTC 6 cut(s) 46, 129, 728, 820, 860, 962
SfaNI GCATC 2 cut(s) 433, 691
SfcI CTRYAG 1 cut(s) 157
SfuI TTCGAA 1 cut(s) 668
SmiMI CAYNNNNRTG 1 cut(s) 802
SmlI CTYRAG 2 cut(s) 54, 181
SmoI CTYRAG 2 cut(s) 54, 181
SpeI ACTAGT 1 cut(s) 593
Sse9I AATT 4 cut(s) 175, 466, 885, 988
SsiI CCGC 2 cut(s) 105, 420
SspMI CTAG 1 cut(s) 594
TaaI ACNGT 2 cut(s) 686, 697
TaiI ACGT 4 cut(s) 202, 728, 926, 945
TaqI TCGA 3 cut(s) 390, 668, 915
TaqII GACCGA 1 cut(s) 524
TasI AATT 4 cut(s) 175, 466, 885, 988
TfiI GAWTC 4 cut(s) 227, 531, 543, 670
Tru1I TTAA 3 cut(s) 182, 195, 930
Tru9I TTAA 3 cut(s) 182, 195, 930
TseFI GTSAC 3 cut(s) 596, 770, 943
TseI GCWGC 2 cut(s) 156, 438
Tsp45I GTSAC 3 cut(s) 596, 770, 943
TspDTI ATGAA 7 cut(s) 242, 434, 786, 843, 861, 865, 972
TspGWI ACGGA 3 cut(s) 22, 357, 835
Tth111I GACNNNGTC 1 cut(s) 922
Vha464I CTTAAG 1 cut(s) 181
XapI RAATTY 1 cut(s) 466
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XspI CTAG 1 cut(s) 594
ZraI GACGTC 1 cut(s) 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.