Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

28143851 .. 28145058

Gene Structure 1208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G74930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGTGAAGCAAGCGATGAAGGAAGAGGAGAAGAAGAGAAACACGGCGATGCAGTCAAAGTACAAAGGAGTGAGGAAGAGGAAATGGGGAAAATGGGTATCGGAGATCAGACTTCCACACAGCAGAGAACGAATTTGGTTAGGCTCTTACGACACTCCCGAGAAGGCGGCGCGTGCTTTCGACGCCGCTCAATTTTGTCTCCGCGGCGGCGATGCTAATTTCAATTTCCCTAATAATCCACCGTCGATCTCCGTAGAAAAGTCGTTGACGCCTCCGGAGATTCAGGAAGCTGCTGCTAGATTCGCTAACACATTCCAAGACATTGTCAAGGGAGAAGAAGAATCGGGTTTAGTACCCGGATCCGAGATCCGACCAGAGTCTCCTTCTACATCTGCATCTGTTGCTACATCGACGGTGGATTATGATTTTTCGTTTTTGGATTTGCTTCCGATGAATTTCGGGTTTGATTCCTTCTCCGACGACTTCTCTGGCTTCTCCGGTGGTGATCGATTTACAGAGATTTTACCCATCGAAGATTACGGAGGAGAGAGTTTATTAGATGAATCTTTGATTCTTTGGGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009611 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

195

Amino Acids

21.9

Weight (kDa)

4.77

Isoelectric Point (pI)

56.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	19 - 69	1.7e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	188
AccII	CGCG	2 cut(s)	172, 204
AccIII	TCCGGA	1 cut(s)	274
AciI	CCGC	5 cut(s)	167, 186, 202, 204, 207
AclWI	GGATC	3 cut(s)	354, 361, 367
AcsI	RAATTY	2 cut(s)	132, 454
AcyI	GRCGYC	2 cut(s)	183, 269
AfaI	GTAC	2 cut(s)	62, 354
AgsI	TTSAA	1 cut(s)	223
AluBI	AGCT	1 cut(s)	290
AluI	AGCT	1 cut(s)	290
Alw26I	GTCTC	2 cut(s)	203, 384
AlwI	GGATC	3 cut(s)	354, 361, 367
Ama87I	CYCGRG	1 cut(s)	158
Aor13HI	TCCGGA	1 cut(s)	274
ApeKI	GCWGC	2 cut(s)	290, 293
ApoI	RAATTY	2 cut(s)	132, 454
AspLEI	GCGC	1 cut(s)	172
AsuC2I	CCSGG	1 cut(s)	357
AsuHPI	GGTGA	2 cut(s)	16, 515
AvaI	CYCGRG	1 cut(s)	158
BamHI	GGATCC	1 cut(s)	359
BbvI	GCAGC	2 cut(s)	277, 280
BccI	CCATC	1 cut(s)	536
BceAI	ACGGC	1 cut(s)	60
BcnI	CCSGG	1 cut(s)	357
BcoDI	GTCTC	2 cut(s)	203, 384
BfaI	CTAG	1 cut(s)	297
BisI	GCNGC	6 cut(s)	168, 186, 205, 208, 291, 294
BlsI	GCNGC	6 cut(s)	169, 187, 206, 209, 292, 295
Bme1390I	CCNGG	1 cut(s)	357
BmeT110I	CYCGRG	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	361
BmrFI	CCNGG	1 cut(s)	357
BmsI	GCATC	3 cut(s)	39, 202, 404
BoxI	GACNNNNGTC	1 cut(s)	376
BpuMI	CCSGG	1 cut(s)	357
Bsa29I	ATCGAT	1 cut(s)	508
BsaHI	GRCGYC	2 cut(s)	183, 269
BsaJI	CCNNGG	1 cut(s)	202
BsaWI	WCCGGW	2 cut(s)	274, 497
BseAI	TCCGGA	1 cut(s)	274
BseCI	ATCGAT	1 cut(s)	508
BseDI	CCNNGG	1 cut(s)	202
BseRI	GAGGAG	2 cut(s)	41, 558
BseXI	GCAGC	2 cut(s)	277, 280
Bsh1236I	CGCG	2 cut(s)	172, 204
BshVI	ATCGAT	1 cut(s)	508
BsiHKCI	CYCGRG	1 cut(s)	158
BsiSI	CCGG	3 cut(s)	275, 357, 498
BsmAI	GTCTC	2 cut(s)	203, 384
BsoBI	CYCGRG	1 cut(s)	158
Bsp13I	TCCGGA	1 cut(s)	274
Bsp143I	GATC	5 cut(s)	105, 246, 359, 366, 505
BspACI	CCGC	5 cut(s)	167, 186, 202, 204, 207
BspDI	ATCGAT	1 cut(s)	508
BspEI	TCCGGA	1 cut(s)	274
BspFNI	CGCG	2 cut(s)	172, 204
BspLI	GGNNCC	1 cut(s)	361
BspPI	GGATC	3 cut(s)	354, 361, 367
BsrBI	CCGCTC	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	5 cut(s)	105, 246, 359, 366, 505
BssNI	GRCGYC	2 cut(s)	183, 269
Bst4CI	ACNGT	2 cut(s)	243, 415
Bst6I	CTCTTC	3 cut(s)	18, 29, 71
BstACI	GRCGYC	2 cut(s)	183, 269
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	12, 174
BstDSI	CCRYGG	1 cut(s)	202
BstFNI	CGCG	2 cut(s)	172, 204
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	5 cut(s)	108, 249, 362, 369, 508
BstMAI	GTCTC	2 cut(s)	203, 384
BstMBI	GATC	5 cut(s)	105, 246, 359, 366, 505
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 182, 302, 401
BstPAI	GACNNNNGTC	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	355
BstUI	CGCG	2 cut(s)	172, 204
BstV1I	GCAGC	2 cut(s)	277, 280
BstX2I	RGATCY	2 cut(s)	359, 366
BstYI	RGATCY	2 cut(s)	359, 366
Bsu15I	ATCGAT	1 cut(s)	508
BsuTUI	ATCGAT	1 cut(s)	508
BtgI	CCRYGG	1 cut(s)	202
BtgZI	GCGATG	3 cut(s)	29, 62, 225
Cac8I	GCNNGC	2 cut(s)	12, 174
CfoI	GCGC	1 cut(s)	172
Cfr42I	CCGCGG	1 cut(s)	205
ClaI	ATCGAT	1 cut(s)	508
CseI	GACGC	2 cut(s)	191, 277
Csp6I	GTAC	2 cut(s)	61, 353
CviJI	RGCY	3 cut(s)	144, 290, 492
CviKI_1	RGCY	3 cut(s)	144, 290, 492
CviQI	GTAC	2 cut(s)	61, 353
DpnI	GATC	5 cut(s)	107, 248, 361, 368, 507
DpnII	GATC	5 cut(s)	105, 246, 359, 366, 505
Eam1104I	CTCTTC	3 cut(s)	18, 29, 71
EarI	CTCTTC	3 cut(s)	18, 29, 71
Eco88I	CYCGRG	1 cut(s)	158
FaiI	YATR	1 cut(s)	423
Fnu4HI	GCNGC	6 cut(s)	168, 186, 205, 208, 291, 294
Fsp4HI	GCNGC	6 cut(s)	168, 186, 205, 208, 291, 294
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	6 cut(s)	168, 186, 205, 208, 291, 294
HapII	CCGG	3 cut(s)	275, 357, 498
HgaI	GACGC	2 cut(s)	191, 277
HhaI	GCGC	1 cut(s)	172
Hin1I	GRCGYC	2 cut(s)	183, 269
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HinfI	GANTC	7 cut(s)	280, 300, 341, 377, 467, 563, 571
HpaII	CCGG	3 cut(s)	275, 357, 498
HphI	GGTGA	2 cut(s)	16, 515
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	6 cut(s)	103, 110, 364, 371, 450, 478
Hpy188III	TCNNGA	3 cut(s)	158, 275, 284
Hpy8I	GTNNAC	1 cut(s)	267
Hpy99I	CGWCG	4 cut(s)	185, 247, 415, 482
HpyAV	CCTTC	4 cut(s)	13, 157, 393, 481
HpyCH4III	ACNGT	2 cut(s)	243, 415
HpyCH4V	TGCA	2 cut(s)	52, 395
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 182, 302, 401
Hsp92I	GRCGYC	2 cut(s)	183, 269
HspAI	GCGC	1 cut(s)	170
Kpn2I	TCCGGA	1 cut(s)	274
KspI	CCGCGG	1 cut(s)	205
Kzo9I	GATC	5 cut(s)	105, 246, 359, 366, 505
LpnPI	CCDG	6 cut(s)	269, 288, 370, 387, 474, 511
Lsp1109I	GCAGC	2 cut(s)	277, 280
LweI	GCATC	3 cut(s)	39, 202, 404
MaeI	CTAG	1 cut(s)	297
MalI	GATC	5 cut(s)	107, 248, 361, 368, 507
MbiI	CCGCTC	1 cut(s)	188
MboI	GATC	5 cut(s)	105, 246, 359, 366, 505
MboII	GAAGA	7 cut(s)	35, 43, 46, 88, 347, 350, 545
MflI	RGATCY	2 cut(s)	359, 366
MluCI	AATT	5 cut(s)	132, 191, 217, 223, 454
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	2 cut(s)	394, 501
MnlI	CCTC	5 cut(s)	19, 66, 72, 282, 536
MroI	TCCGGA	1 cut(s)	274
MslI	CAYNNNNRTG	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	204
MspI	CCGG	3 cut(s)	275, 357, 498
MspR9I	CCNGG	1 cut(s)	357
MvnI	CGCG	2 cut(s)	172, 204
MwoI	GCNNNNNNNGC	4 cut(s)	173, 182, 302, 401
NciI	CCSGG	1 cut(s)	357
NdeII	GATC	5 cut(s)	105, 246, 359, 366, 505
NlaIV	GGNNCC	1 cut(s)	361
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PfeI	GAWTC	6 cut(s)	280, 300, 341, 467, 563, 571
PflFI	GACNNNGTC	1 cut(s)	323
PkrI	GCNGC	6 cut(s)	169, 187, 206, 209, 292, 295
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
PshAI	GACNNNNGTC	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	361
PsuI	RGATCY	2 cut(s)	359, 366
PsyI	GACNNNGTC	1 cut(s)	323
RsaI	GTAC	2 cut(s)	62, 354
RsaNI	GTAC	2 cut(s)	61, 353
RseI	CAYNNNNRTG	1 cut(s)	47
SacII	CCGCGG	1 cut(s)	205
SatI	GCNGC	6 cut(s)	168, 186, 205, 208, 291, 294
Sau3AI	GATC	5 cut(s)	105, 246, 359, 366, 505
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	1 cut(s)	357
SetI	ASST	1 cut(s)	292
SfaNI	GCATC	3 cut(s)	39, 202, 404
Sfr303I	CCGCGG	1 cut(s)	205
SgrBI	CCGCGG	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	47
Sse9I	AATT	5 cut(s)	132, 191, 217, 223, 454
SsiI	CCGC	5 cut(s)	167, 186, 202, 204, 207
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	355
TaaI	ACNGT	2 cut(s)	243, 415
TaqI	TCGA	5 cut(s)	180, 245, 410, 508, 531
TasI	AATT	5 cut(s)	132, 191, 217, 223, 454
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	4 cut(s)	170, 188, 207, 210
TfiI	GAWTC	6 cut(s)	280, 300, 341, 467, 563, 571
TseI	GCWGC	2 cut(s)	290, 293
TspDTI	ATGAA	3 cut(s)	32, 467, 576
TspGWI	ACGGA	2 cut(s)	241, 555
Tth111I	GACNNNGTC	1 cut(s)	323
XapI	RAATTY	2 cut(s)	132, 454
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.