Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

338024 .. 339871

Gene Structure 1848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCACCGGTACGTGGATGCAATGATAGGGACATTAAGTTTTCCCCTAAATTTGTTGTCTATGCCTTGAGAGTCTCGCTCTTTGAAACTGTAAGCGGCAAGAAGGGCATAGGATTGTATGACTCGAGCAAAGCCTCTCACTGGTTAGGTGAGTCTAGTGAACCCTTTAATTCTTTCGGAACCTTCAAGTTTTCCAACAATAATCTTGTCCTTGATGATCAAGCTGGTATCCGTGTTTGGGGCACAAATTTTATGGGAGTTGTTGGCTCATCGTTGGTTAAAGAGTTTCTTGATGATGGAAACTTTGTTATCAAGAACACATGGGACAACGACACAGCTGGTTTCTTATGGCAAAGCTTTGATTTCCTGACTGATACTTTACTGCCAGGTATGGCATTGGGTTGGAAATTTCACAGGGGAATCAATCGATACTTGCTTCCATTTCCCGACGGATACTTACTTCCAAAAATGGCATTGGGTTGGAATTTTCATTGGGGCGTCAATCAATATTTGGTGGCGTGGGAAACCCCTGATAATCCGTCCAAATCGAGAGAGGAATATGTTGCCTCAAGCTTCCCTGAGCTTTTCGTTTCTAACTATGAGGGCCGACTGTACGGGACTGGCCCCTTGGATGACCAAAAAGAACAGAGTCTAATGGATAAAACTTTTCTAAGTGATAAAATTTACATAGCTGACATACAAGAGGTCAGTTTCACGGCTTACAACGACAGCATCTTCACAAGATTGAACCTAAGCCCTCCCGGAATTTTACAGCGCTTGACATGGAACCAGACAGTAGAGAGATGGATTGGTTCTTGGCACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 DUF3660 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

275

Amino Acids

31.4

Weight (kDa)

5.27

Isoelectric Point (pI)

32.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	48 - 145	1.7e-16	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 819
AciI	CCGC	1 cut(s)	96
AcsI	RAATTY	6 cut(s)	50, 247, 407, 484, 681, 765
AcyI	GRCGYC	1 cut(s)	498
AfaI	GTAC	2 cut(s)	12, 614
AfeI	AGCGCT	1 cut(s)	776
AfiI	CCNNNNNNNGG	3 cut(s)	14, 141, 238
AgeI	ACCGGT	1 cut(s)	7
AgsI	TTSAA	3 cut(s)	86, 187, 748
AjnI	CCWGG	1 cut(s)	385
AluBI	AGCT	6 cut(s)	224, 338, 357, 573, 583, 692
AluI	AGCT	6 cut(s)	224, 338, 357, 573, 583, 692
Alw26I	GTCTC	1 cut(s)	79
Ama87I	CYCGRG	1 cut(s)	124
Aor51HI	AGCGCT	1 cut(s)	776
AoxI	GGCC	2 cut(s)	604, 622
ApoI	RAATTY	6 cut(s)	50, 247, 407, 484, 681, 765
AsiGI	ACCGGT	1 cut(s)	7
AspLEI	GCGC	1 cut(s)	777
AspS9I	GGNCC	2 cut(s)	604, 623
AsuC2I	CCSGG	1 cut(s)	762
AsuHPI	GGTGA	1 cut(s)	161
AvaI	CYCGRG	1 cut(s)	124
BaeGI	GKGCMC	1 cut(s)	245
BanI	GGYRCC	2 cut(s)	4, 819
BccI	CCATC	2 cut(s)	290, 798
BceAI	ACGGC	1 cut(s)	732
BciT130I	CCWGG	1 cut(s)	387
BciVI	GTATCC	2 cut(s)	239, 446
BclI	TGATCA	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	762
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	156
BfoI	RGCGCY	1 cut(s)	778
BfuI	GTATCC	2 cut(s)	239, 446
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
Bme1390I	CCNGG	2 cut(s)	387, 762
BmeT110I	CYCGRG	1 cut(s)	124
BmgT120I	GGNCC	2 cut(s)	604, 623
BmiI	GGNNCC	5 cut(s)	6, 181, 625, 788, 821
BmrFI	CCNGG	2 cut(s)	387, 762
BmsI	GCATC	2 cut(s)	8, 741
BplI	GAGNNNNNCTC	2 cut(s)	63, 95
Bpu10I	CCTNAGC	2 cut(s)	579, 752
BpuEI	CTTGAG	2 cut(s)	88, 553
BpuMI	CCSGG	1 cut(s)	762
Bsa29I	ATCGAT	1 cut(s)	427
BsaAI	YACGTR	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	627
BsaWI	WCCGGW	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 141, 238
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	3 cut(s)	146, 625, 823
Bse3DI	GCAATG	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	387
BseCI	ATCGAT	1 cut(s)	427
BseDI	CCNNGG	1 cut(s)	627
BseGI	GGATG	2 cut(s)	23, 637
BseLI	CCNNNNNNNGG	3 cut(s)	14, 141, 238
BseMI	GCAATG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	570
BseNI	ACTGG	3 cut(s)	146, 625, 823
BseSI	GKGCMC	1 cut(s)	245
BshFI	GGCC	2 cut(s)	606, 624
BshNI	GGYRCC	2 cut(s)	4, 819
BshTI	ACCGGT	1 cut(s)	7
BshVI	ATCGAT	1 cut(s)	427
BsiHKCI	CYCGRG	1 cut(s)	124
BsiSI	CCGG	2 cut(s)	8, 762
BslFI	GGGAC	3 cut(s)	44, 338, 631
BslI	CCNNNNNNNGG	3 cut(s)	14, 141, 238
BsmAI	GTCTC	1 cut(s)	79
BsmFI	GGGAC	3 cut(s)	44, 338, 631
BsnI	GGCC	2 cut(s)	606, 624
BsoBI	CYCGRG	1 cut(s)	124
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	2 cut(s)	606, 624
BspCNI	CTCAG	1 cut(s)	571
BspDI	ATCGAT	1 cut(s)	427
BspLI	GGNNCC	5 cut(s)	6, 181, 625, 788, 821
BspT107I	GGYRCC	2 cut(s)	4, 819
BsrDI	GCAATG	1 cut(s)	28
BsrFI	RCCGGY	1 cut(s)	7
BsrI	ACTGG	3 cut(s)	146, 625, 823
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	1 cut(s)	627
BssMI	GATC	1 cut(s)	217
BssNI	GRCGYC	1 cut(s)	498
BssT1I	CCWWGG	1 cut(s)	627
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	3 cut(s)	91, 612, 796
BstACI	GRCGYC	1 cut(s)	498
BstBAI	YACGTR	1 cut(s)	14
BstDEI	CTNAG	3 cut(s)	579, 671, 752
BstF5I	GGATG	2 cut(s)	23, 637
BstH2I	RGCGCY	1 cut(s)	778
BstHHI	GCGC	1 cut(s)	777
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNI	CCWGG	1 cut(s)	387
BstSCI	CCNGG	2 cut(s)	385, 760
BstSLI	GKGCMC	1 cut(s)	245
Bsu15I	ATCGAT	1 cut(s)	427
BsuI	GTATCC	2 cut(s)	239, 446
BsuRI	GGCC	2 cut(s)	606, 624
BsuTUI	ATCGAT	1 cut(s)	427
BtsCI	GGATG	2 cut(s)	23, 637
BtsIMutI	CAGTG	1 cut(s)	139
CfoI	GCGC	1 cut(s)	777
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	604, 623
ClaI	ATCGAT	1 cut(s)	427
CseI	GACGC	1 cut(s)	487
Csp6I	GTAC	2 cut(s)	11, 613
CspAI	ACCGGT	1 cut(s)	7
CviAII	CATG	2 cut(s)	321, 783
CviQI	GTAC	2 cut(s)	11, 613
DdeI	CTNAG	3 cut(s)	579, 671, 752
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	627
Eco47III	AGCGCT	1 cut(s)	776
Eco88I	CYCGRG	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	385
EcoT14I	CCWWGG	1 cut(s)	627
ErhI	CCWWGG	1 cut(s)	627
FaeI	CATG	2 cut(s)	324, 786
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FaqI	GGGAC	3 cut(s)	44, 338, 631
FatI	CATG	2 cut(s)	320, 782
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	1 cut(s)	97
FokI	GGATG	2 cut(s)	30, 644
Fsp4HI	GCNGC	1 cut(s)	97
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	1 cut(s)	776
GluI	GCNGC	1 cut(s)	97
HaeII	RGCGCY	1 cut(s)	778
HaeIII	GGCC	2 cut(s)	606, 624
HapII	CCGG	2 cut(s)	8, 762
HgaI	GACGC	1 cut(s)	487
HhaI	GCGC	1 cut(s)	777
Hin1I	GRCGYC	1 cut(s)	498
Hin1II	CATG	2 cut(s)	324, 786
Hin6I	GCGC	1 cut(s)	775
HinP1I	GCGC	1 cut(s)	775
HindIII	AAGCTT	2 cut(s)	355, 571
HinfI	GANTC	5 cut(s)	72, 122, 152, 420, 649
HpaII	CCGG	2 cut(s)	8, 762
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	179
Hpy188III	TCNNGA	5 cut(s)	290, 313, 367, 446, 549
Hpy8I	GTNNAC	1 cut(s)	161
Hpy99I	CGWCG	1 cut(s)	452
HpyAV	CCTTC	2 cut(s)	97, 193
HpyCH4III	ACNGT	3 cut(s)	91, 612, 796
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	1 cut(s)	21
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	3 cut(s)	579, 671, 752
HpySE526I	ACGT	1 cut(s)	13
Hsp92I	GRCGYC	1 cut(s)	498
Hsp92II	CATG	2 cut(s)	324, 786
HspAI	GCGC	1 cut(s)	775
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	217
LweI	GCATC	2 cut(s)	8, 741
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	1 cut(s)	13
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	1 cut(s)	727
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	7 cut(s)	50, 169, 247, 407, 484, 681, 765
MlyI	GAGTC	4 cut(s)	81, 116, 161, 658
MmeI	TCCRAC	3 cut(s)	219, 383, 461
MnlI	CCTC	6 cut(s)	145, 547, 577, 595, 697, 768
MseI	TTAA	3 cut(s)	36, 168, 279
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	2 cut(s)	8, 762
MspR9I	CCNGG	2 cut(s)	387, 762
MvaI	CCWGG	1 cut(s)	387
MwoI	GCNNNNNNNGC	1 cut(s)	105
NciI	CCSGG	1 cut(s)	762
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	2 cut(s)	324, 786
NlaIV	GGNNCC	5 cut(s)	6, 181, 625, 788, 821
PaeR7I	CTCGAG	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	420
PfoI	TCCNGGA	1 cut(s)	760
PinAI	ACCGGT	1 cut(s)	7
PkrI	GCNGC	1 cut(s)	98
PleI	GAGTC	4 cut(s)	80, 116, 160, 657
PpsI	GAGTC	4 cut(s)	80, 116, 160, 657
Ppu21I	YACGTR	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	385
PspN4I	GGNNCC	5 cut(s)	6, 181, 625, 788, 821
PspPI	GGNCC	2 cut(s)	604, 623
PspXI	VCTCGAGB	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	2 cut(s)	12, 614
RsaNI	GTAC	2 cut(s)	11, 613
SaqAI	TTAA	3 cut(s)	36, 168, 279
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	2 cut(s)	604, 623
SchI	GAGTC	4 cut(s)	81, 116, 161, 658
ScrFI	CCNGG	2 cut(s)	387, 762
SduI	GDGCHC	1 cut(s)	245
SfaNI	GCATC	2 cut(s)	8, 741
Sfr274I	CTCGAG	1 cut(s)	124
SlaI	CTCGAG	1 cut(s)	124
SmlI	CTYRAG	3 cut(s)	67, 124, 568
SmoI	CTYRAG	3 cut(s)	67, 124, 568
Sse9I	AATT	7 cut(s)	50, 169, 247, 407, 484, 681, 765
SsiI	CCGC	1 cut(s)	96
SspI	AATATT	1 cut(s)	509
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	385, 760
StyI	CCWWGG	1 cut(s)	627
TaaI	ACNGT	3 cut(s)	91, 612, 796
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	3 cut(s)	125, 427, 548
TasI	AATT	7 cut(s)	50, 169, 247, 407, 484, 681, 765
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	420
Tru1I	TTAA	3 cut(s)	36, 168, 279
Tru9I	TTAA	3 cut(s)	36, 168, 279
TscAI	CASTG	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	479
TspGWI	ACGGA	3 cut(s)	221, 465, 528
TspRI	CASTG	1 cut(s)	146
XapI	RAATTY	6 cut(s)	50, 247, 407, 484, 681, 765
XhoI	CTCGAG	1 cut(s)	124
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.