Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

7898012 .. 7899242

Gene Structure 1231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G18160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCGTCATCTAGCAGCACATACCGGAGCTCAAGCTCTTCCGACGGTGGTAATAATAACCCGTCGGACTCCGTCGTCACCGTCGACGAACGAAAACGTAAAAGAATGTTATCGAACAGAGAATCTGCACGTAGGTCAAGGATGCGTAAACAGAAACACGTTGATGATCTAACGGCTCAGATCAATCAGCTATCAAACGACAACCGTCAGATCTTGAACAGCCTCACCGTAACATCTCAGCTTTACATGAAGATCCAAGCCGAGAACTCTGTTCTCACCGCTCAGATGGAGGAGCTTAGCACCAGACTCCAATCTCTCAACGAGATCGTTGATCTTGTTCAATCCAACGGTGCAGGATTTGGTGTTGACCAGATCGACGGCTGTGGTTTTGATGATCGTACGGTTGGGATCGACGGATATTACGATGATATGAATATGATGAGTAATGTTAATCATTGGGGTGGTTCGGTTTACACTAACCAACCCATTATGGCTAATGATATCAATATGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0046982 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

171

Amino Acids

19.1

Weight (kDa)

5.12

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	29 - 74	5e-07	Basic region leucine zipper
bZIP_1	PF00170	31 - 82	2.2e-09	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AccBSI	CCGCTC	1 cut(s)	281
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	1 cut(s)	279
AclWI	GGATC	2 cut(s)	247, 416
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	400
AflIII	ACRYGT	1 cut(s)	157
AgsI	TTSAA	2 cut(s)	217, 341
AluBI	AGCT	5 cut(s)	30, 36, 190, 241, 295
AluI	AGCT	5 cut(s)	30, 36, 190, 241, 295
Alw21I	GWGCWC	1 cut(s)	32
AlwI	GGATC	2 cut(s)	247, 416
ApeKI	GCWGC	1 cut(s)	15
AsuHPI	GGTGA	3 cut(s)	70, 217, 268
BanII	GRGCYC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	2 cut(s)	189, 394
BfaI	CTAG	1 cut(s)	12
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	1 cut(s)	16
BlpI	GCTNAGC	1 cut(s)	296
BlsI	GCNGC	1 cut(s)	17
BmsI	GCATC	1 cut(s)	132
BoxI	GACNNNNGTC	1 cut(s)	204
Bpu1102I	GCTNAGC	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	16
BsaAI	YACGTR	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	24
BseGI	GGATG	1 cut(s)	147
BseMII	CTCAG	3 cut(s)	191, 251, 296
BseRI	GAGGAG	1 cut(s)	305
BseXI	GCAGC	1 cut(s)	27
BsgI	GTGCAG	2 cut(s)	111, 372
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	25
BsiWI	CGTACG	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	9 cut(s)	166, 180, 210, 252, 324, 331, 372, 394, 408
Bsp1720I	GCTNAGC	1 cut(s)	296
BspACI	CCGC	1 cut(s)	279
BspCNI	CTCAG	3 cut(s)	190, 250, 295
BspPI	GGATC	2 cut(s)	247, 416
BspQI	GCTCTTC	1 cut(s)	43
BsrBI	CCGCTC	1 cut(s)	281
BssMI	GATC	9 cut(s)	166, 180, 210, 252, 324, 331, 372, 394, 408
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	6 cut(s)	47, 82, 206, 229, 350, 403
Bst6I	CTCTTC	1 cut(s)	43
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	131
BstDEI	CTNAG	4 cut(s)	177, 237, 282, 296
BstF5I	GGATG	1 cut(s)	147
BstKTI	GATC	9 cut(s)	169, 183, 213, 255, 327, 334, 375, 397, 411
BstMBI	GATC	9 cut(s)	166, 180, 210, 252, 324, 331, 372, 394, 408
BstPAI	GACNNNNGTC	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	27
BstX2I	RGATCY	2 cut(s)	210, 252
BstYI	RGATCY	2 cut(s)	210, 252
BtsCI	GGATG	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	399
CviAII	CATG	1 cut(s)	247
CviQI	GTAC	1 cut(s)	399
DdeI	CTNAG	4 cut(s)	177, 237, 282, 296
DpnI	GATC	9 cut(s)	168, 182, 212, 254, 326, 333, 374, 396, 410
DpnII	GATC	9 cut(s)	166, 180, 210, 252, 324, 331, 372, 394, 408
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	32
Eco32I	GATATC	1 cut(s)	502
Eco53kI	GAGCTC	1 cut(s)	30
EcoICRI	GAGCTC	1 cut(s)	30
EcoRV	GATATC	1 cut(s)	502
EcoT38I	GRGCYC	1 cut(s)	32
FaeI	CATG	1 cut(s)	250
FaiI	YATR	6 cut(s)	22, 248, 431, 437, 491, 509
FatI	CATG	1 cut(s)	246
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	16
FokI	GGATG	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	16
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	1 cut(s)	16
HapII	CCGG	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	250
HincII	GTYRAC	2 cut(s)	85, 367
HindII	GTYRAC	2 cut(s)	85, 367
HinfI	GANTC	3 cut(s)	68, 122, 306
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	3 cut(s)	70, 217, 268
Hpy166II	GTNNAC	4 cut(s)	85, 149, 367, 472
Hpy188I	TCNGA	5 cut(s)	43, 67, 180, 210, 285
Hpy188III	TCNNGA	1 cut(s)	214
Hpy8I	GTNNAC	4 cut(s)	85, 149, 367, 472
Hpy99I	CGWCG	7 cut(s)	47, 67, 77, 86, 89, 380, 416
HpyCH4III	ACNGT	6 cut(s)	47, 82, 206, 229, 350, 403
HpyCH4IV	ACGT	3 cut(s)	97, 130, 159
HpyCH4V	TGCA	2 cut(s)	128, 353
HpyF3I	CTNAG	4 cut(s)	177, 237, 282, 296
HpySE526I	ACGT	3 cut(s)	97, 130, 159
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	250
Kzo9I	GATC	9 cut(s)	166, 180, 210, 252, 324, 331, 372, 394, 408
LguI	GCTCTTC	1 cut(s)	43
LmnI	GCTCC	2 cut(s)	27, 292
LpnPI	CCDG	4 cut(s)	38, 316, 339, 383
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	3 cut(s)	97, 130, 159
MaeIII	GTNAC	2 cut(s)	76, 229
MalI	GATC	9 cut(s)	168, 182, 212, 254, 326, 333, 374, 396, 410
MbiI	CCGCTC	1 cut(s)	281
MboI	GATC	9 cut(s)	166, 180, 210, 252, 324, 331, 372, 394, 408
MboII	GAAGA	2 cut(s)	30, 262
MflI	RGATCY	2 cut(s)	210, 252
MhlI	GDGCHC	1 cut(s)	32
MlyI	GAGTC	2 cut(s)	62, 300
MmeI	TCCRAC	3 cut(s)	45, 66, 369
MnlI	CCTC	2 cut(s)	233, 283
MseI	TTAA	1 cut(s)	450
MslI	CAYNNNNRTG	2 cut(s)	162, 459
MspI	CCGG	1 cut(s)	25
NdeII	GATC	9 cut(s)	166, 180, 210, 252, 324, 331, 372, 394, 408
NlaIII	CATG	1 cut(s)	250
NmeAIII	GCCGAG	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	76
PciSI	GCTCTTC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 420
PfeI	GAWTC	1 cut(s)	122
Pfl23II	CGTACG	1 cut(s)	398
PflFI	GACNNNGTC	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	17
PleI	GAGTC	2 cut(s)	62, 300
PpsI	GAGTC	2 cut(s)	62, 300
Ppu21I	YACGTR	1 cut(s)	131
PshAI	GACNNNNGTC	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	32
PspLI	CGTACG	1 cut(s)	398
PsuI	RGATCY	2 cut(s)	210, 252
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	400
RsaNI	GTAC	1 cut(s)	399
RseI	CAYNNNNRTG	2 cut(s)	162, 459
SacI	GAGCTC	1 cut(s)	32
SalI	GTCGAC	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	1 cut(s)	16
Sau3AI	GATC	9 cut(s)	166, 180, 210, 252, 324, 331, 372, 394, 408
SchI	GAGTC	2 cut(s)	62, 300
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	9 cut(s)	32, 38, 100, 133, 137, 162, 192, 243, 297
SfaNI	GCATC	1 cut(s)	132
SgrDI	CGTCGACG	1 cut(s)	83
SmiMI	CAYNNNNRTG	2 cut(s)	162, 459
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
SsiI	CCGC	1 cut(s)	279
SspMI	CTAG	1 cut(s)	12
SstI	GAGCTC	1 cut(s)	32
TaaI	ACNGT	6 cut(s)	47, 82, 206, 229, 350, 403
TaiI	ACGT	3 cut(s)	100, 133, 162
TaqI	TCGA	4 cut(s)	84, 113, 375, 411
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	1 cut(s)	15
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	2 cut(s)	263, 446
TspGWI	ACGGA	2 cut(s)	61, 429
Tth111I	GACNNNGTC	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	84
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.