Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

9333844 .. 9336278

Gene Structure 2435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAACTATCCTTCAAACCCTAACCCTAGCTCCACAGATTTCACTGAATTTTTCAAGTTCGATGATTTTGACGATACTTTTGAGAAGATCATGGAAGAAATCGGCCGTGAGGACCACTCGTCGTCACCGACTTTGAGTTGGAGTTCATCGGAAAAGTTAGTGGCTGCAGAAATCACAAGCCCGCTTCAAACAAGCCTAGCTACCTCACCTATGAGCTTTGAAATAGGTGACAAAGATGAAATCAAAAAGAGGAAGAGACACAAAGAAGATCCGATTATTCACGTCTTCAAAACGAAATCATCAATTGATGAAAAGGTTGCTTTAGATGATGGGTATAAATGGAGGAAATACGGAAAGAAGCCGATAACGGGTAGTCCATTTCCAAGGCATTATCACAAGTGTTCGAGCCCAGATTGCAACGTGAAGAAGAAGATCGAAAGAGATACGAACAATCCAGATTACATATTGACAACATACGAAGGTAGACATAACCACCCAAGCCCTTCTGTAGTTTATTGTGATTCAGACGACTTTGATCTTAACTCTCTCAACAATTGGTCCTTTCAGACGGCAAATACGTATAGTTTCTCTCATTCTGCTCCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0098542 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

202

Amino Acids

23.25

Weight (kDa)

5.75

Isoelectric Point (pI)

57.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	109 - 166	5.4e-24	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	484
AciI	CCGC	1 cut(s)	182
AclWI	GGATC	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgsI	TTSAA	5 cut(s)	15, 55, 188, 221, 289
AhdI	GACNNNNNGTC	1 cut(s)	118
AjiI	CACGTC	1 cut(s)	283
AluBI	AGCT	3 cut(s)	30, 200, 216
AluI	AGCT	3 cut(s)	30, 200, 216
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	1 cut(s)	263
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	47
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AspS9I	GGNCC	2 cut(s)	112, 558
AsuHPI	GGTGA	3 cut(s)	117, 198, 239
AvaII	GGWCC	2 cut(s)	112, 558
BanII	GRGCYC	1 cut(s)	410
BbsI	GAAGAC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	1 cut(s)	323
BceAI	ACGGC	2 cut(s)	90, 585
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	2 cut(s)	27, 197
BfmI	CTRYAG	2 cut(s)	165, 507
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
Bme18I	GGWCC	2 cut(s)	112, 558
BmeRI	GACNNNNNGTC	1 cut(s)	118
BmgBI	CACGTC	1 cut(s)	283
BmgT120I	GGNCC	2 cut(s)	112, 558
BpiI	GAAGAC	1 cut(s)	277
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
BsaAI	YACGTR	1 cut(s)	579
BsaJI	CCNNGG	1 cut(s)	383
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	383
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseX3I	CGGCCG	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	151
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	1 cut(s)	105
BsiEI	CGRYCG	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp143I	GATC	4 cut(s)	87, 268, 432, 535
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	169
BspPI	GGATC	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	383
BssMI	GATC	4 cut(s)	87, 268, 432, 535
BssT1I	CCWWGG	1 cut(s)	383
Bst6I	CTCTTC	1 cut(s)	248
BstBAI	YACGTR	1 cut(s)	579
BstC8I	GCNNGC	1 cut(s)	182
BstKTI	GATC	4 cut(s)	90, 271, 435, 538
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	4 cut(s)	87, 268, 432, 535
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	1 cut(s)	414
BstSFI	CTRYAG	2 cut(s)	165, 507
BstSNI	TACGTA	1 cut(s)	579
BstV1I	GCAGC	1 cut(s)	151
BstV2I	GAAGAC	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BstZI	CGGCCG	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	105
BtrI	CACGTC	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	182
Cfr13I	GGNCC	2 cut(s)	112, 558
CviAII	CATG	1 cut(s)	91
DpnI	GATC	4 cut(s)	89, 270, 434, 537
DpnII	GATC	4 cut(s)	87, 268, 432, 535
DriI	GACNNNNNGTC	1 cut(s)	118
EaeI	YGGCCR	1 cut(s)	103
EagI	CGGCCG	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	248
Eam1105I	GACNNNNNGTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	248
EclXI	CGGCCG	1 cut(s)	103
Eco105I	TACGTA	1 cut(s)	579
Eco130I	CCWWGG	1 cut(s)	383
Eco24I	GRGCYC	1 cut(s)	410
Eco47I	GGWCC	2 cut(s)	112, 558
Eco52I	CGGCCG	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	383
EcoT38I	GRGCYC	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	383
FaeI	CATG	1 cut(s)	94
FaiI	YATR	8 cut(s)	92, 212, 336, 464, 475, 489, 582, 604
FatI	CATG	1 cut(s)	90
FauI	CCCGC	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	484
Fnu4HI	GCNGC	1 cut(s)	165
FriOI	GRGCYC	1 cut(s)	410
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	2 cut(s)	27, 197
GluI	GCNGC	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	105
Hin1II	CATG	1 cut(s)	94
HinfI	GANTC	1 cut(s)	521
HphI	GGTGA	3 cut(s)	117, 198, 239
Hpy166II	GTNNAC	1 cut(s)	485
Hpy188I	TCNGA	4 cut(s)	151, 273, 526, 567
Hpy188III	TCNNGA	1 cut(s)	455
Hpy8I	GTNNAC	1 cut(s)	485
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	3 cut(s)	21, 473, 513
HpyCH4IV	ACGT	3 cut(s)	282, 420, 578
HpyCH4V	TGCA	2 cut(s)	167, 417
HpyF10VI	GCNNNNNNNGC	1 cut(s)	414
HpySE526I	ACGT	3 cut(s)	282, 420, 578
Hsp92II	CATG	1 cut(s)	94
Kzo9I	GATC	4 cut(s)	87, 268, 432, 535
LmnI	GCTCC	2 cut(s)	35, 604
LpnPI	CCDG	2 cut(s)	423, 468
Lsp1109I	GCAGC	1 cut(s)	151
MaeI	CTAG	2 cut(s)	27, 197
MaeII	ACGT	3 cut(s)	282, 420, 578
MaeIII	GTNAC	2 cut(s)	123, 227
MalI	GATC	4 cut(s)	89, 270, 434, 537
MboI	GATC	4 cut(s)	87, 268, 432, 535
MboII	GAAGA	8 cut(s)	97, 107, 265, 277, 278, 436, 439, 442
MfeI	CAATTG	2 cut(s)	303, 553
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	410
MluCI	AATT	3 cut(s)	47, 303, 553
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	4 cut(s)	103, 214, 243, 336
MseI	TTAA	1 cut(s)	540
MunI	CAATTG	2 cut(s)	303, 553
MwoI	GCNNNNNNNGC	1 cut(s)	414
NdeII	GATC	4 cut(s)	87, 268, 432, 535
NlaIII	CATG	1 cut(s)	94
NmuCI	GTSAC	2 cut(s)	123, 227
PcsI	WCGNNNNNNNCGW	2 cut(s)	125, 575
PfeI	GAWTC	1 cut(s)	521
PkrI	GCNGC	1 cut(s)	166
Ppu21I	YACGTR	1 cut(s)	579
PspPI	GGNCC	2 cut(s)	112, 558
PstI	CTGCAG	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	540
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	4 cut(s)	87, 268, 432, 535
Sau96I	GGNCC	2 cut(s)	112, 558
SduI	GDGCHC	1 cut(s)	410
SfcI	CTRYAG	2 cut(s)	165, 507
SinI	GGWCC	2 cut(s)	112, 558
SnaBI	TACGTA	1 cut(s)	579
Sse9I	AATT	3 cut(s)	47, 303, 553
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	2 cut(s)	27, 197
StyI	CCWWGG	1 cut(s)	383
TaiI	ACGT	3 cut(s)	285, 423, 581
TaqI	TCGA	3 cut(s)	60, 404, 435
TasI	AATT	3 cut(s)	47, 303, 553
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	2 cut(s)	123, 227
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	2 cut(s)	123, 227
TspDTI	ATGAA	4 cut(s)	17, 135, 252, 324
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	1 cut(s)	49
VpaK11BI	GGWCC	2 cut(s)	112, 558
XapI	RAATTY	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	484
XspI	CTAG	2 cut(s)	27, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.