AT2G24620

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
N/A
Physical Location & Seq
Reverse (-)
10463076 .. 10463959
884 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24620.1

Sequence Viewer

Length: 474 bp
ATGAAATTTGGCTGGGATGCCAAATCAAACATAAATAGAGTTTTGAAATCTTGGAGAAGCTTTGATGATCCTTCTCCCGGGGAATACACATACGGAGTGGAACGTCATGAGCTCGCGCAAAGTTTCATTCGGAAGAAAGGTGTGTCAACATTCCGGAGTGACCCATGGAAGACAAAAAATGACGTAGAATATGAAAGTGGAAATTTAACCTACACGACATACCGCATTACCGCGACCGAAGAGAAAGCCACCTATTTCTTCAGTATCACGAATGAATCCTTCTTCTCAATATTGAGATTGTCCTATACCGGTGTGTTGCAGCGGTCTACGTGGGTTCCAAAACCACAACAAATGTGTAAACGACTAAGGGATCGTGTTTTACCACATGATACATGCGGTTCATACAATGTATGTGGAGCTTATGGTCTGTGTGACATGGACACATCACCAAACTGTGTTTGCACATGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 DUF3660 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

157

Amino Acids

18.21

Weight (kDa)

8.72

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 51 - 154 9.3e-15 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 326
AccII CGCG 2 cut(s) 116, 233
AccIII TCCGGA 1 cut(s) 153
AciI CCGC 4 cut(s) 223, 231, 322, 396
AclWI GGATC 2 cut(s) 62, 378
AcsI RAATTY 2 cut(s) 5, 202
AcuI CTGAAG 1 cut(s) 244
AfiI CCNNNNNNNGG 1 cut(s) 77
AgeI ACCGGT 1 cut(s) 308
AgsI TTSAA 1 cut(s) 46
AluBI AGCT 3 cut(s) 60, 112, 419
AluI AGCT 3 cut(s) 60, 112, 419
Alw21I GWGCWC 1 cut(s) 114
AlwI GGATC 2 cut(s) 62, 378
Ama87I CYCGRG 1 cut(s) 77
Aor13HI TCCGGA 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 319
ApoI RAATTY 2 cut(s) 5, 202
AsiGI ACCGGT 1 cut(s) 308
AspLEI GCGC 1 cut(s) 118
AsuC2I CCSGG 2 cut(s) 78, 79
AsuHPI GGTGA 1 cut(s) 438
AvaI CYCGRG 1 cut(s) 77
BanII GRGCYC 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 176
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 331
BcnI CCSGG 2 cut(s) 78, 79
BisI GCNGC 1 cut(s) 320
BlsI GCNGC 1 cut(s) 321
Bme1390I CCNGG 2 cut(s) 78, 79
BmeT110I CYCGRG 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 2 cut(s) 78, 79
BmsI GCATC 1 cut(s) 7
BpiI GAAGAC 1 cut(s) 176
BpuMI CCSGG 2 cut(s) 78, 79
BsaAI YACGTR 1 cut(s) 330
BsaJI CCNNGG 3 cut(s) 77, 78, 164
BsaWI WCCGGW 2 cut(s) 153, 308
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse118I RCCGGY 1 cut(s) 308
BseAI TCCGGA 1 cut(s) 153
BseDI CCNNGG 3 cut(s) 77, 78, 164
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 331
BseYI CCCAGC 1 cut(s) 12
Bsh1236I CGCG 2 cut(s) 116, 233
Bsh1285I CGRYCG 1 cut(s) 237
BshTI ACCGGT 1 cut(s) 308
BsiEI CGRYCG 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 3 cut(s) 78, 154, 309
BslI CCNNNNNNNGG 1 cut(s) 77
BsoBI CYCGRG 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 114
Bsp13I TCCGGA 1 cut(s) 153
Bsp143I GATC 2 cut(s) 67, 370
Bsp19I CCATGG 1 cut(s) 164
BspACI CCGC 4 cut(s) 223, 231, 322, 396
BspEI TCCGGA 1 cut(s) 153
BspFNI CGCG 2 cut(s) 116, 233
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 336
BspPI GGATC 2 cut(s) 62, 378
BsrFI RCCGGY 1 cut(s) 308
BssAI RCCGGY 1 cut(s) 308
BssECI CCNNGG 3 cut(s) 77, 78, 164
BssMI GATC 2 cut(s) 67, 370
BssT1I CCWWGG 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 455
Bst6I CTCTTC 1 cut(s) 234
BstBAI YACGTR 1 cut(s) 330
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 365
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 22
BstFNI CGCG 2 cut(s) 116, 233
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 2 cut(s) 70, 373
BstMBI GATC 2 cut(s) 67, 370
BstMCI CGRYCG 1 cut(s) 237
BstNSI RCATGY 1 cut(s) 396
BstSCI CCNGG 2 cut(s) 76, 77
BstUI CGCG 2 cut(s) 116, 233
BstV1I GCAGC 1 cut(s) 331
BstV2I GAAGAC 1 cut(s) 176
BtgI CCRYGG 1 cut(s) 164
BtsCI GGATG 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 114
CciI TCATGA 1 cut(s) 106
CfoI GCGC 1 cut(s) 118
Cfr10I RCCGGY 1 cut(s) 308
Cfr9I CCCGGG 1 cut(s) 77
CspAI ACCGGT 1 cut(s) 308
CspCI CAANNNNNGTGG 2 cut(s) 394, 429
CviAII CATG 6 cut(s) 107, 165, 386, 393, 436, 465
CviJI RGCY 5 cut(s) 12, 60, 112, 248, 419
CviKI_1 RGCY 5 cut(s) 12, 60, 112, 248, 419
DdeI CTNAG 1 cut(s) 365
DpnI GATC 2 cut(s) 69, 372
DpnII GATC 2 cut(s) 67, 370
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Ecl136II GAGCTC 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 244
Eco88I CYCGRG 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 6 cut(s) 110, 168, 389, 396, 439, 468
FatI CATG 6 cut(s) 106, 164, 385, 392, 435, 464
FblI GTMKAC 1 cut(s) 326
Fnu4HI GCNGC 1 cut(s) 320
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 320
GlaI GCGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 320
GsaI CCCAGC 1 cut(s) 16
HapII CCGG 3 cut(s) 78, 154, 309
HhaI GCGC 1 cut(s) 118
Hin1II CATG 6 cut(s) 110, 168, 389, 396, 439, 468
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 1 cut(s) 275
HpaII CCGG 3 cut(s) 78, 154, 309
HphI GGTGA 1 cut(s) 438
Hpy166II GTNNAC 3 cut(s) 147, 327, 359
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 3 cut(s) 107, 154, 268
Hpy8I GTNNAC 3 cut(s) 147, 327, 359
HpyAV CCTTC 2 cut(s) 81, 289
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4IV ACGT 3 cut(s) 103, 183, 329
HpyCH4V TGCA 2 cut(s) 319, 462
HpyF3I CTNAG 1 cut(s) 365
HpySE526I ACGT 3 cut(s) 103, 183, 329
Hsp92II CATG 6 cut(s) 110, 168, 389, 396, 439, 468
HspAI GCGC 1 cut(s) 116
Kpn2I TCCGGA 1 cut(s) 153
Kzo9I GATC 2 cut(s) 67, 370
LmnI GCTCC 1 cut(s) 416
LpnPI CCDG 3 cut(s) 91, 167, 322
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 1 cut(s) 7
MaeII ACGT 3 cut(s) 103, 183, 329
MaeIII GTNAC 2 cut(s) 158, 431
MalI GATC 2 cut(s) 69, 372
MboI GATC 2 cut(s) 67, 370
MboII GAAGA 5 cut(s) 145, 181, 250, 251, 274
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 2 cut(s) 5, 202
MroI TCCGGA 1 cut(s) 153
MseI TTAA 1 cut(s) 206
MspA1I CMGCKG 1 cut(s) 322
MspI CCGG 3 cut(s) 78, 154, 309
MspR9I CCNGG 2 cut(s) 78, 79
MvnI CGCG 2 cut(s) 116, 233
NciI CCSGG 2 cut(s) 78, 79
NcoI CCATGG 1 cut(s) 164
NdeII GATC 2 cut(s) 67, 370
NlaIII CATG 6 cut(s) 110, 168, 389, 396, 439, 468
NlaIV GGNNCC 1 cut(s) 336
NmuCI GTSAC 2 cut(s) 158, 431
NspI RCATGY 1 cut(s) 396
PagI TCATGA 1 cut(s) 106
PfeI GAWTC 1 cut(s) 275
PinAI ACCGGT 1 cut(s) 308
PkrI GCNGC 1 cut(s) 321
Ppu21I YACGTR 1 cut(s) 330
Psp124BI GAGCTC 1 cut(s) 114
PspFI CCCAGC 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 336
SacI GAGCTC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 206
SatI GCNGC 1 cut(s) 320
Sau3AI GATC 2 cut(s) 67, 370
ScrFI CCNGG 2 cut(s) 78, 79
SduI GDGCHC 1 cut(s) 114
SetI ASST 9 cut(s) 62, 106, 114, 142, 186, 212, 254, 332, 421
SfaNI GCATC 1 cut(s) 7
SmaI CCCGGG 1 cut(s) 79
Sse9I AATT 2 cut(s) 5, 202
SsiI CCGC 4 cut(s) 223, 231, 322, 396
SspI AATATT 1 cut(s) 291
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 76, 77
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 455
TaiI ACGT 3 cut(s) 106, 186, 332
TaqII GACCGA 1 cut(s) 251
TasI AATT 2 cut(s) 5, 202
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TseFI GTSAC 2 cut(s) 158, 431
TseI GCWGC 1 cut(s) 319
Tsp45I GTSAC 2 cut(s) 158, 431
TspDTI ATGAA 5 cut(s) 17, 115, 207, 288, 390
TspGWI ACGGA 1 cut(s) 108
TspMI CCCGGG 1 cut(s) 77
XapI RAATTY 2 cut(s) 5, 202
XceI RCATGY 1 cut(s) 396
XmaI CCCGGG 1 cut(s) 77
XmiI GTMKAC 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.