Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

12903208 .. 12905338

Gene Structure 2131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGTCTTCCACTTCTTTCACCGACCTTCTTGGTTCTTCCGGCGTTGACTGTTACGAAGATGATGAAGACTTGAGAGTTTCTGGGTCGAGTTTTGGTGGGTACTATCCAGAGAGAACCGGGTCTGGTTTACCTAAGTTCAAGACGGCTCAACCACCACCTCTTCCGATTTCACAATCTTCTCATAACTTCACTTTCTCCGATTACCTTGATTCTCCTCTGCTTCTCAGCTCCTCACACAGTTTGATATCTCCAACAACAGGAACGTTTCCATTGCAAGGCTTTAATGGAACAACAAACAATCACTCAGATTTTCCCTGGCAGCTACAATCTCAACCATCAAACGCTTCTTCTGCTTTGCAAGAAACATATGGTGTTCAAGATCACGAGAAGAAGCAGGAGATGATTCCTAATGAGATTGCAACACAAAACAACAATCAAAGTTTTGGAACAGAACGTCAGATAAAGATACCAGCATACATGGTGAGTAGGAACTCTAATGATGGTTATGGTTGGAGAAAATACGGTCAGAAACAAGTGAAGAAGAGCGAAAACCCTAGGAGTTACTTCAAGTGTACGTATCCTGATTGTGTTTCCAAGAAGATTGTTGAGACGGCTTCTGATGGACAGATCACTGAGATCATTTATAAAGGTGGTCATAATCATCCTAAGCCTGAGTTCACCAAGAGACCATCTCAATCTTCATTACCATCATCGGTTAATGGGAGGCGCTTGTTTAATCCTGCTTCTGTTGTTAGTGAACCTCATGATCAATCAGAGAACTCTTCGATTTCGTTTGACTATAGTGATCTTGAGCAGAAAAGTTTTAAATCAGAGTATGGTGAGATAGATGAAGAGGAGGAACAACCTGAGATGAAGAGGATGAAAAGAGAAGGTGAAGATGAAGGGATGTCTATAGAAGTAAGCAAAGGAGTTAAAGAGCCAAGAGTTGTGGTTCAGACAATAAGTGATATTGATGTTCTTATAGATGGCTTTAGATGGAGGAAATATGGTCAAAAAGTTGTCAAAGGAAATACTAATCCAAGGAGCTACTACAAGTGCACATTCCAAGGTTGTGGAGTGAAGAAGCAAGTGGAAAGATCCGCAGCAGACGAGAGAGCAGTTCTCACTACCTATGAAGGAAGACACAATCACGATATCCCAACCGCGCTACGTCGCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009403 GO:0009404 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009700 GO:0009889 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010035 GO:0010120 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010506 GO:0010508 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0031323 GO:0031325 GO:0031326 GO:0031329 GO:0031331 GO:0033554 GO:0034605 GO:0034641 GO:0042221 GO:0042430 GO:0042435 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044424 GO:0044464 GO:0044550 GO:0046217 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0070370 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

393

Amino Acids

44.13

Weight (kDa)

6.05

Isoelectric Point (pI)

63.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	166 - 222	4.8e-23	WRKY DNA -binding domain
WRKY	PF03106	329 - 385	1.2e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	645
AccII	CGCG	1 cut(s)	1166
AciI	CCGC	2 cut(s)	1101, 1164
AclI	AACGTT	1 cut(s)	263
AclWI	GGATC	1 cut(s)	1092
AfaI	GTAC	2 cut(s)	101, 574
AfiI	CCNNNNNNNGG	2 cut(s)	257, 275
AgsI	TTSAA	3 cut(s)	139, 377, 568
AjnI	CCWGG	1 cut(s)	314
AluBI	AGCT	3 cut(s)	228, 322, 1047
AluI	AGCT	3 cut(s)	228, 322, 1047
Alw21I	GWGCWC	1 cut(s)	1061
Alw26I	GTCTC	2 cut(s)	602, 679
Alw44I	GTGCAC	1 cut(s)	1057
AlwI	GGATC	1 cut(s)	1092
ApaLI	GTGCAC	1 cut(s)	1057
ApeKI	GCWGC	2 cut(s)	319, 1103
AspA2I	CCTAGG	1 cut(s)	554
AspLEI	GCGC	2 cut(s)	729, 1168
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	5 cut(s)	10, 493, 670, 851, 905
AvrII	CCTAGG	1 cut(s)	554
BaeGI	GKGCMC	1 cut(s)	1061
BauI	CACGAG	2 cut(s)	383, 1177
BbsI	GAAGAC	2 cut(s)	72, 1147
Bbv12I	GWGCWC	1 cut(s)	1061
BbvI	GCAGC	2 cut(s)	331, 1115
BccI	CCATC	7 cut(s)	343, 494, 614, 697, 715, 980, 990
BceAI	ACGGC	2 cut(s)	159, 627
BciT130I	CCWGG	1 cut(s)	316
BciVI	GTATCC	1 cut(s)	588
BclI	TGATCA	1 cut(s)	766
BcnI	CCSGG	1 cut(s)	118
BcoDI	GTCTC	2 cut(s)	602, 679
BfaI	CTAG	1 cut(s)	555
BfmI	CTRYAG	2 cut(s)	799, 912
BfoI	RGCGCY	1 cut(s)	730
BfuI	GTATCC	1 cut(s)	588
BisI	GCNGC	2 cut(s)	320, 1104
BlnI	CCTAGG	1 cut(s)	554
BlsI	GCNGC	2 cut(s)	321, 1105
Bme1390I	CCNGG	2 cut(s)	118, 316
BmrFI	CCNGG	2 cut(s)	118, 316
BpiI	GAAGAC	2 cut(s)	72, 1147
BplI	GAGNNNNNCTC	4 cut(s)	676, 708, 1107, 1139
Bpu10I	CCTNAGC	1 cut(s)	666
BpuEI	CTTGAG	2 cut(s)	91, 830
BpuMI	CCSGG	1 cut(s)	118
BsaAI	YACGTR	1 cut(s)	576
BsaI	GGTCTC	1 cut(s)	679
BsaJI	CCNNGG	4 cut(s)	314, 554, 1040, 1066
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 275
Bse3DI	GCAATG	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	316
BseDI	CCNNGG	4 cut(s)	314, 554, 1040, 1066
BseGI	GGATG	3 cut(s)	661, 885, 912
BseLI	CCNNNNNNNGG	2 cut(s)	257, 275
BseMI	GCAATG	1 cut(s)	269
BseMII	CTCAG	5 cut(s)	238, 318, 624, 663, 858
BseRI	GAGGAG	3 cut(s)	204, 220, 869
BseSI	GKGCMC	1 cut(s)	1061
BseXI	GCAGC	2 cut(s)	331, 1115
Bsh1236I	CGCG	1 cut(s)	1166
BsiHKAI	GWGCWC	1 cut(s)	1061
BsiSI	CCGG	2 cut(s)	39, 117
BslI	CCNNNNNNNGG	2 cut(s)	257, 275
BsmAI	GTCTC	2 cut(s)	602, 679
BsmBI	CGTCTC	1 cut(s)	602
Bso31I	GGTCTC	1 cut(s)	679
Bsp1286I	GDGCHC	1 cut(s)	1061
Bsp143I	GATC	6 cut(s)	379, 627, 636, 766, 805, 1097
BspACI	CCGC	2 cut(s)	1101, 1164
BspCNI	CTCAG	5 cut(s)	237, 317, 625, 664, 859
BspFNI	CGCG	1 cut(s)	1166
BspHI	TCATGA	1 cut(s)	763
BspPI	GGATC	1 cut(s)	1092
BspQI	GCTCTTC	1 cut(s)	536
BspTNI	GGTCTC	1 cut(s)	679
BsrDI	GCAATG	1 cut(s)	269
BssECI	CCNNGG	4 cut(s)	314, 554, 1040, 1066
BssMI	GATC	6 cut(s)	379, 627, 636, 766, 805, 1097
BssSI	CACGAG	2 cut(s)	383, 1177
BssT1I	CCWWGG	3 cut(s)	554, 1040, 1066
Bst2BI	CACGAG	2 cut(s)	383, 1177
Bst2UI	CCWGG	1 cut(s)	316
Bst4CI	ACNGT	3 cut(s)	50, 239, 524
Bst6I	CTCTTC	5 cut(s)	165, 536, 787, 846, 869
BstBAI	YACGTR	1 cut(s)	576
BstDEI	CTNAG	7 cut(s)	132, 224, 304, 633, 666, 672, 867
BstF5I	GGATG	3 cut(s)	661, 885, 912
BstFNI	CGCG	1 cut(s)	1166
BstH2I	RGCGCY	1 cut(s)	730
BstHHI	GCGC	2 cut(s)	729, 1168
BstKTI	GATC	6 cut(s)	382, 630, 639, 769, 808, 1100
BstMAI	GTCTC	2 cut(s)	602, 679
BstMBI	GATC	6 cut(s)	379, 627, 636, 766, 805, 1097
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNI	CCWGG	1 cut(s)	316
BstSCI	CCNGG	2 cut(s)	116, 314
BstSFI	CTRYAG	2 cut(s)	799, 912
BstSLI	GKGCMC	1 cut(s)	1061
BstSNI	TACGTA	1 cut(s)	576
BstUI	CGCG	1 cut(s)	1166
BstV1I	GCAGC	2 cut(s)	331, 1115
BstV2I	GAAGAC	2 cut(s)	72, 1147
BstX2I	RGATCY	1 cut(s)	1097
BstXI	CCANNNNNNTGG	1 cut(s)	1073
BstYI	RGATCY	1 cut(s)	1097
BsuI	GTATCC	1 cut(s)	588
BtsCI	GGATG	3 cut(s)	661, 885, 912
BtsIMutI	CAGTG	1 cut(s)	630
CciI	TCATGA	1 cut(s)	763
CfoI	GCGC	2 cut(s)	729, 1168
Csp6I	GTAC	2 cut(s)	100, 573
CspCI	CAANNNNNGTGG	2 cut(s)	930, 965
CviAII	CATG	2 cut(s)	478, 764
CviJI	RGCY	9 cut(s)	146, 228, 279, 322, 614, 670, 940, 990, 1047
CviKI_1	RGCY	9 cut(s)	146, 228, 279, 322, 614, 670, 940, 990, 1047
CviQI	GTAC	2 cut(s)	100, 573
DdeI	CTNAG	7 cut(s)	132, 224, 304, 633, 666, 672, 867
DpnI	GATC	6 cut(s)	381, 629, 638, 768, 807, 1099
DpnII	GATC	6 cut(s)	379, 627, 636, 766, 805, 1097
DraI	TTTAAA	1 cut(s)	826
Eam1104I	CTCTTC	5 cut(s)	165, 536, 787, 846, 869
EarI	CTCTTC	5 cut(s)	165, 536, 787, 846, 869
Eco105I	TACGTA	1 cut(s)	576
Eco130I	CCWWGG	3 cut(s)	554, 1040, 1066
Eco31I	GGTCTC	1 cut(s)	679
Eco32I	GATATC	2 cut(s)	246, 1156
EcoRII	CCWGG	1 cut(s)	314
EcoRV	GATATC	2 cut(s)	246, 1156
EcoT14I	CCWWGG	3 cut(s)	554, 1040, 1066
ErhI	CCWWGG	3 cut(s)	554, 1040, 1066
Esp3I	CGTCTC	1 cut(s)	602
FaeI	CATG	2 cut(s)	481, 767
FatI	CATG	2 cut(s)	477, 763
FauNDI	CATATG	1 cut(s)	367
FbaI	TGATCA	1 cut(s)	766
Fnu4HI	GCNGC	2 cut(s)	320, 1104
FokI	GGATG	3 cut(s)	648, 892, 919
Fsp4HI	GCNGC	2 cut(s)	320, 1104
FspBI	CTAG	1 cut(s)	555
GlaI	GCGC	2 cut(s)	728, 1167
GluI	GCNGC	2 cut(s)	320, 1104
HaeII	RGCGCY	1 cut(s)	730
HapII	CCGG	2 cut(s)	39, 117
HhaI	GCGC	2 cut(s)	729, 1168
Hin1II	CATG	2 cut(s)	481, 767
Hin6I	GCGC	2 cut(s)	727, 1166
HinP1I	GCGC	2 cut(s)	727, 1166
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	2 cut(s)	209, 403
HpaII	CCGG	2 cut(s)	39, 117
HphI	GGTGA	5 cut(s)	10, 493, 670, 851, 905
Hpy166II	GTNNAC	6 cut(s)	46, 128, 573, 678, 758, 1059
Hpy188I	TCNGA	9 cut(s)	165, 199, 307, 459, 528, 619, 775, 832, 957
Hpy188III	TCNNGA	9 cut(s)	107, 139, 377, 383, 581, 764, 809, 1151, 1179
Hpy8I	GTNNAC	6 cut(s)	46, 128, 573, 678, 758, 1059
Hpy99I	CGWCG	1 cut(s)	1176
HpyAV	CCTTC	4 cut(s)	35, 884, 896, 1130
HpyCH4III	ACNGT	3 cut(s)	50, 239, 524
HpyCH4IV	ACGT	4 cut(s)	263, 454, 575, 1171
HpyCH4V	TGCA	4 cut(s)	274, 358, 419, 1059
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	7 cut(s)	132, 224, 304, 633, 666, 672, 867
HpySE526I	ACGT	4 cut(s)	263, 454, 575, 1171
Hsp92II	CATG	2 cut(s)	481, 767
HspAI	GCGC	2 cut(s)	727, 1166
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	6 cut(s)	379, 627, 636, 766, 805, 1097
LguI	GCTCTTC	1 cut(s)	536
LmnI	GCTCC	2 cut(s)	233, 1044
Lsp1109I	GCAGC	2 cut(s)	331, 1115
MaeI	CTAG	1 cut(s)	555
MaeII	ACGT	4 cut(s)	263, 454, 575, 1171
MaeIII	GTNAC	2 cut(s)	50, 560
MalI	GATC	6 cut(s)	381, 629, 638, 768, 807, 1099
MboI	GATC	6 cut(s)	379, 627, 636, 766, 805, 1097
MflI	RGATCY	1 cut(s)	1097
MhlI	GDGCHC	1 cut(s)	1061
MmeI	TCCRAC	2 cut(s)	275, 491
MnlI	CCTC	9 cut(s)	168, 225, 241, 717, 771, 847, 850, 870, 993
MseI	TTAA	5 cut(s)	282, 717, 735, 825, 933
MspI	CCGG	2 cut(s)	39, 117
MspR9I	CCNGG	2 cut(s)	118, 316
MvaI	CCWGG	1 cut(s)	316
MvnI	CGCG	1 cut(s)	1166
MwoI	GCNNNNNNNGC	1 cut(s)	350
NciI	CCSGG	1 cut(s)	118
NdeI	CATATG	1 cut(s)	367
NdeII	GATC	6 cut(s)	379, 627, 636, 766, 805, 1097
NlaIII	CATG	2 cut(s)	481, 767
PagI	TCATGA	1 cut(s)	763
PciSI	GCTCTTC	1 cut(s)	536
PfeI	GAWTC	2 cut(s)	209, 403
PkrI	GCNGC	2 cut(s)	321, 1105
Ppu21I	YACGTR	1 cut(s)	576
PsiI	TTATAA	1 cut(s)	645
Psp1406I	AACGTT	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	1097
RsaI	GTAC	2 cut(s)	101, 574
RsaNI	GTAC	2 cut(s)	100, 573
SapI	GCTCTTC	1 cut(s)	536
SaqAI	TTAA	5 cut(s)	282, 717, 735, 825, 933
SatI	GCNGC	2 cut(s)	320, 1104
Sau3AI	GATC	6 cut(s)	379, 627, 636, 766, 805, 1097
ScrFI	CCNGG	2 cut(s)	118, 316
SduI	GDGCHC	1 cut(s)	1061
SfcI	CTRYAG	2 cut(s)	799, 912
SmlI	CTYRAG	2 cut(s)	70, 809
SmoI	CTYRAG	2 cut(s)	70, 809
SnaBI	TACGTA	1 cut(s)	576
SsiI	CCGC	2 cut(s)	1101, 1164
SspMI	CTAG	1 cut(s)	555
StyD4I	CCNGG	2 cut(s)	116, 314
StyI	CCWWGG	3 cut(s)	554, 1040, 1066
TaaI	ACNGT	3 cut(s)	50, 239, 524
TaiI	ACGT	4 cut(s)	266, 457, 578, 1174
TaqI	TCGA	2 cut(s)	86, 785
TfiI	GAWTC	2 cut(s)	209, 403
Tru1I	TTAA	5 cut(s)	282, 717, 735, 825, 933
Tru9I	TTAA	5 cut(s)	282, 717, 735, 825, 933
TscAI	CASTG	1 cut(s)	637
TseI	GCWGC	2 cut(s)	319, 1103
TspDTI	ATGAA	7 cut(s)	78, 690, 864, 887, 896, 915, 1149
TspRI	CASTG	1 cut(s)	637
VneI	GTGCAC	1 cut(s)	1057
XmaJI	CCTAGG	1 cut(s)	554
XspI	CTAG	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.