Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

13306431 .. 13307572

Gene Structure 1142 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G31230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGAATATTCCCAATCTTCCATGTATTCATCTCCAAGTTCTTGGAGCTCATCACAAGAATCACTCTTATGGAACGAGAGCTGTTTCTTGGATCAATCATCTGAACCTCAAGCCTTCTTTTGCCCTAATTATGATTACTCCGATGACTTTTTCTCATTTGAGTCACCGGAGATGATGATTAAGGAAGAAATTCAAAACGGCGACGTTTCTAACTCCGAAGAAGAAGAAAAGGTTGGAATTGATGAAGAAAGATCATACAGAGGAGTGAGGAAAAGGCCGTGGGGGAAATTTGCAGCGGAGATAAGAGATTCAACGAGGAATGGAATTAGGGTTTGGCTCGGGACATTTGACAAAGCCGAGGAAGCCGCTCTTGCTTATGATCAAGCGGCTTTCGCCACAAAAGGATCTCTTGCAACACTTAATTTCCCGGTGGAAGTGGTTAGAGAGTCGCTAAAGAAAATGGAGAATGTGAATCTTCATGATGGAGGATCTCCGGTTATGGCCTTGAAGAGAAAACATTCTCTTCGAAACCGGCCTAGAGGGAAAAAGCGATCCTCTTCTTCTTCTTCTTCTTCTTCTAATTCTTCTTCTTGCTCTTCTTCTTCGTCTACTTCTTCAACATCAAGAAGTAGTAGTAAGCAGAGTGTTGTGAAGCAAGAAAGTGGTACACTTGTGGTTTTTGAAGATTTAGGTGCTGAGTATTTAGAACAACTTCTTATGAGCTCATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002376 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009814 GO:0009861 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

243

Amino Acids

27.06

Weight (kDa)

5.11

Isoelectric Point (pI)

86.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	85 - 135	1.9e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	368
AccI	GTMKAC	1 cut(s)	608
AciI	CCGC	3 cut(s)	296, 366, 386
AclWI	GGATC	4 cut(s)	99, 412, 496, 546
AcsI	RAATTY	2 cut(s)	189, 287
AfaI	GTAC	1 cut(s)	667
AgsI	TTSAA	5 cut(s)	194, 312, 508, 618, 683
AjuI	GAANNNNNNNTTGG	4 cut(s)	216, 248, 316, 348
AluBI	AGCT	3 cut(s)	48, 81, 723
AluI	AGCT	3 cut(s)	48, 81, 723
Alw21I	GWGCWC	2 cut(s)	50, 725
AlwI	GGATC	4 cut(s)	99, 412, 496, 546
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	3 cut(s)	275, 501, 533
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	2 cut(s)	189, 287
Asp700I	GAANNNNTTC	3 cut(s)	189, 517, 711
AsuC2I	CCSGG	1 cut(s)	428
AsuHPI	GGTGA	1 cut(s)	156
AsuII	TTCGAA	1 cut(s)	526
AvaI	CYCGRG	1 cut(s)	338
BaeI	ACNNNNGTAYC	2 cut(s)	657, 690
BanII	GRGCYC	2 cut(s)	50, 725
Bbv12I	GWGCWC	2 cut(s)	50, 725
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	1 cut(s)	476
BceAI	ACGGC	2 cut(s)	214, 262
BclI	TGATCA	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	428
BfaI	CTAG	1 cut(s)	537
BisI	GCNGC	3 cut(s)	294, 366, 387
BlsI	GCNGC	3 cut(s)	295, 367, 388
Bme1390I	CCNGG	1 cut(s)	428
BmeT110I	CYCGRG	1 cut(s)	338
BmrFI	CCNGG	1 cut(s)	428
Bpu14I	TTCGAA	1 cut(s)	526
BpuEI	CTTGAG	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	428
BsaJI	CCNNGG	2 cut(s)	278, 357
BsaWI	WCCGGW	2 cut(s)	166, 493
Bse118I	RCCGGY	1 cut(s)	531
BseDI	CCNNGG	2 cut(s)	278, 357
BseMII	CTCAG	1 cut(s)	687
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	305
BshFI	GGCC	3 cut(s)	277, 503, 535
BsiHKAI	GWGCWC	2 cut(s)	50, 725
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	4 cut(s)	167, 428, 494, 532
BslFI	GGGAC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	355
BsnI	GGCC	3 cut(s)	277, 503, 535
BsoBI	CYCGRG	1 cut(s)	338
Bsp119I	TTCGAA	1 cut(s)	526
Bsp1286I	GDGCHC	2 cut(s)	50, 725
Bsp143I	GATC	6 cut(s)	91, 251, 379, 404, 488, 551
BspACI	CCGC	3 cut(s)	296, 366, 386
BspANI	GGCC	3 cut(s)	277, 503, 535
BspCNI	CTCAG	1 cut(s)	688
BspHI	TCATGA	1 cut(s)	478
BspPI	GGATC	4 cut(s)	99, 412, 496, 546
BspQI	GCTCTTC	1 cut(s)	601
BspT104I	TTCGAA	1 cut(s)	526
BsrBI	CCGCTC	1 cut(s)	368
BsrFI	RCCGGY	1 cut(s)	531
BssAI	RCCGGY	1 cut(s)	531
BssECI	CCNNGG	2 cut(s)	278, 357
BssMI	GATC	6 cut(s)	91, 251, 379, 404, 488, 551
Bst6I	CTCTTC	4 cut(s)	503, 528, 562, 601
BstBI	TTCGAA	1 cut(s)	526
BstDEI	CTNAG	1 cut(s)	696
BstDSI	CCRYGG	1 cut(s)	278
BstKTI	GATC	6 cut(s)	94, 254, 382, 407, 491, 554
BstMBI	GATC	6 cut(s)	91, 251, 379, 404, 488, 551
BstMWI	GCNNNNNNNGC	3 cut(s)	362, 371, 392
BstSCI	CCNGG	1 cut(s)	426
BstV1I	GCAGC	1 cut(s)	305
BstX2I	RGATCY	2 cut(s)	404, 488
BstXI	CCANNNNNNTGG	1 cut(s)	42
BstYI	RGATCY	2 cut(s)	404, 488
BsuRI	GGCC	3 cut(s)	277, 503, 535
BtgI	CCRYGG	1 cut(s)	278
CciI	TCATGA	1 cut(s)	478
Cfr10I	RCCGGY	1 cut(s)	531
Csp6I	GTAC	1 cut(s)	666
CviAII	CATG	3 cut(s)	22, 479, 726
CviQI	GTAC	1 cut(s)	666
DdeI	CTNAG	1 cut(s)	696
DpnI	GATC	6 cut(s)	93, 253, 381, 406, 490, 553
DpnII	GATC	6 cut(s)	91, 251, 379, 404, 488, 551
Eam1104I	CTCTTC	4 cut(s)	503, 528, 562, 601
EarI	CTCTTC	4 cut(s)	503, 528, 562, 601
Ecl136II	GAGCTC	2 cut(s)	48, 723
Eco24I	GRGCYC	2 cut(s)	50, 725
Eco53kI	GAGCTC	2 cut(s)	48, 723
Eco88I	CYCGRG	1 cut(s)	338
EcoICRI	GAGCTC	2 cut(s)	48, 723
EcoT38I	GRGCYC	2 cut(s)	50, 725
FaeI	CATG	3 cut(s)	25, 482, 729
FaiI	YATR	9 cut(s)	23, 70, 132, 256, 378, 480, 500, 719, 727
FalI	AAGNNNNNCTT	4 cut(s)	354, 386, 393, 425
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	3 cut(s)	21, 478, 725
FbaI	TGATCA	1 cut(s)	379
FblI	GTMKAC	1 cut(s)	608
Fnu4HI	GCNGC	3 cut(s)	294, 366, 387
FriOI	GRGCYC	2 cut(s)	50, 725
Fsp4HI	GCNGC	3 cut(s)	294, 366, 387
FspBI	CTAG	1 cut(s)	537
GluI	GCNGC	3 cut(s)	294, 366, 387
HaeIII	GGCC	3 cut(s)	277, 503, 535
HapII	CCGG	4 cut(s)	167, 428, 494, 532
Hin1II	CATG	3 cut(s)	25, 482, 729
HinfI	GANTC	5 cut(s)	59, 161, 308, 446, 472
HpaII	CCGG	4 cut(s)	167, 428, 494, 532
HphI	GGTGA	1 cut(s)	156
Hpy166II	GTNNAC	2 cut(s)	609, 668
Hpy188I	TCNGA	3 cut(s)	103, 142, 217
Hpy188III	TCNNGA	3 cut(s)	340, 479, 624
Hpy8I	GTNNAC	2 cut(s)	609, 668
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	2 cut(s)	293, 413
HpyF10VI	GCNNNNNNNGC	3 cut(s)	362, 371, 392
HpyF3I	CTNAG	1 cut(s)	696
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	3 cut(s)	25, 482, 729
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	6 cut(s)	91, 251, 379, 404, 488, 551
LguI	GCTCTTC	1 cut(s)	601
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	4 cut(s)	180, 441, 507, 545
Lsp1109I	GCAGC	1 cut(s)	305
MaeI	CTAG	1 cut(s)	537
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	162
MalI	GATC	6 cut(s)	93, 253, 381, 406, 490, 553
MbiI	CCGCTC	1 cut(s)	368
MboI	GATC	6 cut(s)	91, 251, 379, 404, 488, 551
MflI	RGATCY	2 cut(s)	404, 488
MhlI	GDGCHC	2 cut(s)	50, 725
MluCI	AATT	7 cut(s)	127, 189, 237, 287, 324, 421, 580
MlyI	GAGTC	2 cut(s)	170, 455
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	8 cut(s)	117, 254, 261, 309, 352, 479, 533, 565
MroXI	GAANNNNTTC	3 cut(s)	189, 517, 711
MseI	TTAA	2 cut(s)	180, 420
MslI	CAYNNNNRTG	1 cut(s)	67
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	4 cut(s)	167, 428, 494, 532
MspR9I	CCNGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	3 cut(s)	362, 371, 392
NciI	CCSGG	1 cut(s)	428
NdeII	GATC	6 cut(s)	91, 251, 379, 404, 488, 551
NlaIII	CATG	3 cut(s)	25, 482, 729
NmeAIII	GCCGAG	1 cut(s)	382
NmuCI	GTSAC	1 cut(s)	162
NspV	TTCGAA	1 cut(s)	526
PagI	TCATGA	1 cut(s)	478
PciSI	GCTCTTC	1 cut(s)	601
PdmI	GAANNNNTTC	3 cut(s)	189, 517, 711
PfeI	GAWTC	3 cut(s)	59, 308, 472
PkrI	GCNGC	3 cut(s)	295, 367, 388
PleI	GAGTC	2 cut(s)	169, 454
PpsI	GAGTC	2 cut(s)	169, 454
Psp124BI	GAGCTC	2 cut(s)	50, 725
PsuI	RGATCY	2 cut(s)	404, 488
RsaI	GTAC	1 cut(s)	667
RsaNI	GTAC	1 cut(s)	666
RseI	CAYNNNNRTG	1 cut(s)	67
SacI	GAGCTC	2 cut(s)	50, 725
SapI	GCTCTTC	1 cut(s)	601
SaqAI	TTAA	2 cut(s)	180, 420
SatI	GCNGC	3 cut(s)	294, 366, 387
Sau3AI	GATC	6 cut(s)	91, 251, 379, 404, 488, 551
SchI	GAGTC	2 cut(s)	170, 455
ScrFI	CCNGG	1 cut(s)	428
SduI	GDGCHC	2 cut(s)	50, 725
SetI	ASST	7 cut(s)	50, 83, 109, 207, 234, 694, 725
SfuI	TTCGAA	1 cut(s)	526
SmiMI	CAYNNNNRTG	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	7 cut(s)	127, 189, 237, 287, 324, 421, 580
SsiI	CCGC	3 cut(s)	296, 366, 386
SspI	AATATT	1 cut(s)	8
SspMI	CTAG	1 cut(s)	537
SstI	GAGCTC	2 cut(s)	50, 725
StyD4I	CCNGG	1 cut(s)	426
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	1 cut(s)	526
TasI	AATT	7 cut(s)	127, 189, 237, 287, 324, 421, 580
TauI	GCSGC	2 cut(s)	368, 389
TfiI	GAWTC	3 cut(s)	59, 308, 472
Tru1I	TTAA	2 cut(s)	180, 420
Tru9I	TTAA	2 cut(s)	180, 420
TseFI	GTSAC	1 cut(s)	162
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	162
TspDTI	ATGAA	3 cut(s)	18, 258, 467
XapI	RAATTY	2 cut(s)	189, 287
XmiI	GTMKAC	1 cut(s)	608
XmnI	GAANNNNTTC	3 cut(s)	189, 517, 711
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.