Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

16067396 .. 16068615

Gene Structure 1220 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAAAAGGAAGATAACGGATCGAAACAGAGCTCCTCTGCTTCTGTTGTATCCTCGAGAAGACGAAGAAGAGTGGTTGAGCCAGTGGAAGCGACGTTACAGAGATGGGAGGAAGAAGGATTGGCGAGAGCTCGTAGGGTTCAAGCCAAAGGTTCGAAGAAAGGTTGTATGAGAGGAAAAGGTGGACCAGAGAATCCTGTTTGTCGGTTTAGAGGTGTTCGACAAAGGGTTTGGGGGAAATGGGTTGCTGAGATACGTGAACCAGTGAGTCACCGTGGTGCAAACTCTAGTCGTAGTAAACGGCTTTGGCTTGGCACGTTTGCTACTGCAGCTGAAGCTGCTTTGGCTTACGACAGAGCTGCTAGTGTCATGTACGGACCCTATGCCAGGTTAAATTTCCCGGAAGATTTGGGTGGGGGAAGGAAGAAGGACGAGGAGGCGGAAAGTTCGGGAGGCTATTGGTTGGAAACTAACAAAGCCGGTAATGGCGTGATTGAAACGGAAGGTGGAAAAGACTATGTAGTCTACAATGAAGACGCTATTGAGCTTGGCCATGACAAGACTCAGAATCCTATGACTGATAATGAAATAGTGAACCCAGCAGTGAAATCAGAGGAAGGTTACAGCTATGATCGATTCAAATTGGATAACGGATTGTTGTATAATGAACCTCAAAGCTCCAGTTATCACCAGGGAGGTGGATTCGATTCATATTTTGAGTATTTCAGATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

244

Amino Acids

27.37

Weight (kDa)

8.39

Isoelectric Point (pI)

65.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	69 - 126	3.9e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	521
AccI	GTMKAC	1 cut(s)	525
AciI	CCGC	1 cut(s)	440
AclWI	GGATC	1 cut(s)	28
AcoI	YGGCCR	1 cut(s)	550
AcsI	RAATTY	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	387
AgsI	TTSAA	3 cut(s)	143, 497, 640
AjnI	CCWGG	2 cut(s)	386, 690
AleI	CACNNNNGTG	1 cut(s)	276
AluBI	AGCT	8 cut(s)	33, 131, 332, 338, 359, 547, 627, 678
AluI	AGCT	8 cut(s)	33, 131, 332, 338, 359, 547, 627, 678
Alw21I	GWGCWC	2 cut(s)	35, 133
AlwI	GGATC	1 cut(s)	28
Ama87I	CYCGRG	1 cut(s)	55
AoxI	GGCC	1 cut(s)	550
ApeKI	GCWGC	3 cut(s)	329, 338, 359
ApoI	RAATTY	1 cut(s)	394
ArsI	GACNNNNNNTTYG	2 cut(s)	213, 245
AspS9I	GGNCC	2 cut(s)	185, 377
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	2 cut(s)	263, 680
AsuII	TTCGAA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	55
AvaII	GGWCC	2 cut(s)	185, 377
BalI	TGGCCA	1 cut(s)	552
BanII	GRGCYC	2 cut(s)	35, 133
BarI	GAAGNNNNNNTAC	2 cut(s)	81, 113
BbsI	GAAGAC	2 cut(s)	67, 540
Bbv12I	GWGCWC	2 cut(s)	35, 133
BbvI	GCAGC	3 cut(s)	325, 341, 346
BccI	CCATC	1 cut(s)	99
BceAI	ACGGC	1 cut(s)	317
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	2 cut(s)	388, 692
BciVI	GTATCC	1 cut(s)	61
BcnI	CCSGG	1 cut(s)	401
BfaI	CTAG	3 cut(s)	288, 363, 733
BfmI	CTRYAG	1 cut(s)	327
BfuI	GTATCC	1 cut(s)	61
BisI	GCNGC	3 cut(s)	330, 339, 360
BlsI	GCNGC	3 cut(s)	331, 340, 361
Bme1390I	CCNGG	3 cut(s)	388, 401, 692
Bme18I	GGWCC	2 cut(s)	185, 377
BmeT110I	CYCGRG	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	185, 377
BmiI	GGNNCC	1 cut(s)	379
BmrFI	CCNGG	3 cut(s)	388, 401, 692
BpiI	GAAGAC	2 cut(s)	67, 540
BpmI	CTGGAG	1 cut(s)	664
Bpu14I	TTCGAA	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	401
Bsa29I	ATCGAT	1 cut(s)	634
BsaAI	YACGTR	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	274, 691
Bsc4I	CCNNNNNNNGG	1 cut(s)	387
Bse118I	RCCGGY	1 cut(s)	479
Bse1I	ACTGG	3 cut(s)	83, 263, 681
BseBI	CCWGG	2 cut(s)	388, 692
BseCI	ATCGAT	1 cut(s)	634
BseDI	CCNNGG	2 cut(s)	274, 691
BseLI	CCNNNNNNNGG	1 cut(s)	387
BseMII	CTCAG	2 cut(s)	240, 578
BseNI	ACTGG	3 cut(s)	83, 263, 681
BseRI	GAGGAG	2 cut(s)	25, 449
BseXI	GCAGC	3 cut(s)	325, 341, 346
BseYI	CCCAGC	1 cut(s)	598
BshFI	GGCC	1 cut(s)	552
BshVI	ATCGAT	1 cut(s)	634
BsiHKAI	GWGCWC	2 cut(s)	35, 133
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	401, 480
BslI	CCNNNNNNNGG	1 cut(s)	387
BsnI	GGCC	1 cut(s)	552
BsoBI	CYCGRG	1 cut(s)	55
Bsp119I	TTCGAA	1 cut(s)	155
Bsp1286I	GDGCHC	2 cut(s)	35, 133
Bsp143I	GATC	2 cut(s)	20, 631
BspACI	CCGC	1 cut(s)	440
BspANI	GGCC	1 cut(s)	552
BspCNI	CTCAG	2 cut(s)	241, 577
BspDI	ATCGAT	1 cut(s)	634
BspLI	GGNNCC	1 cut(s)	379
BspMAI	CTGCAG	1 cut(s)	331
BspPI	GGATC	1 cut(s)	28
BspT104I	TTCGAA	1 cut(s)	155
BsrFI	RCCGGY	1 cut(s)	479
BsrI	ACTGG	3 cut(s)	83, 263, 681
BssAI	RCCGGY	1 cut(s)	479
BssECI	CCNNGG	2 cut(s)	274, 691
BssMI	GATC	2 cut(s)	20, 631
Bst2UI	CCWGG	2 cut(s)	388, 692
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	1 cut(s)	64
BstBAI	YACGTR	1 cut(s)	257
BstBI	TTCGAA	1 cut(s)	155
BstDEI	CTNAG	2 cut(s)	249, 564
BstDSI	CCRYGG	1 cut(s)	274
BstENI	CCTNNNNNAGG	1 cut(s)	385
BstKTI	GATC	2 cut(s)	23, 634
BstMBI	GATC	2 cut(s)	20, 631
BstMWI	GCNNNNNNNGC	4 cut(s)	329, 335, 338, 344
BstNI	CCWGG	2 cut(s)	388, 692
BstSCI	CCNGG	3 cut(s)	386, 399, 690
BstSFI	CTRYAG	1 cut(s)	327
BstV1I	GCAGC	3 cut(s)	325, 341, 346
BstV2I	GAAGAC	2 cut(s)	67, 540
BstXI	CCANNNNNNTGG	1 cut(s)	698
Bsu15I	ATCGAT	1 cut(s)	634
BsuI	GTATCC	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	552
BsuTUI	ATCGAT	1 cut(s)	634
BtgI	CCRYGG	1 cut(s)	274
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	3 cut(s)	90, 270, 609
Cfr10I	RCCGGY	1 cut(s)	479
Cfr13I	GGNCC	2 cut(s)	185, 377
ClaI	ATCGAT	1 cut(s)	634
CseI	GACGC	1 cut(s)	545
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	2 cut(s)	370, 554
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	2 cut(s)	249, 564
DpnI	GATC	2 cut(s)	22, 633
DpnII	GATC	2 cut(s)	20, 631
DrdI	GACNNNNNNGTC	1 cut(s)	521
DseDI	GACNNNNNNGTC	1 cut(s)	521
EaeI	YGGCCR	1 cut(s)	550
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	455
Ecl136II	GAGCTC	2 cut(s)	33, 131
Eco24I	GRGCYC	2 cut(s)	35, 133
Eco47I	GGWCC	2 cut(s)	185, 377
Eco53kI	GAGCTC	2 cut(s)	33, 131
Eco57I	CTGAAG	1 cut(s)	354
Eco88I	CYCGRG	1 cut(s)	55
EcoICRI	GAGCTC	2 cut(s)	33, 131
EcoNI	CCTNNNNNAGG	1 cut(s)	385
EcoRII	CCWGG	2 cut(s)	386, 690
EcoT38I	GRGCYC	2 cut(s)	35, 133
FaeI	CATG	2 cut(s)	373, 557
FaiI	YATR	9 cut(s)	170, 371, 384, 519, 555, 575, 630, 663, 712
FatI	CATG	2 cut(s)	369, 553
FblI	GTMKAC	1 cut(s)	525
Fnu4HI	GCNGC	3 cut(s)	330, 339, 360
FriOI	GRGCYC	2 cut(s)	35, 133
Fsp4HI	GCNGC	3 cut(s)	330, 339, 360
FspBI	CTAG	3 cut(s)	288, 363, 733
GluI	GCNGC	3 cut(s)	330, 339, 360
GsaI	CCCAGC	1 cut(s)	602
GsuI	CTGGAG	1 cut(s)	664
HaeIII	GGCC	1 cut(s)	552
HapII	CCGG	2 cut(s)	401, 480
HgaI	GACGC	1 cut(s)	545
Hin1II	CATG	2 cut(s)	373, 557
HinfI	GANTC	8 cut(s)	193, 268, 562, 568, 636, 702, 707, 729
HpaII	CCGG	2 cut(s)	401, 480
HphI	GGTGA	2 cut(s)	263, 680
Hpy166II	GTNNAC	5 cut(s)	185, 260, 299, 526, 595
Hpy188I	TCNGA	3 cut(s)	567, 613, 728
Hpy188III	TCNNGA	2 cut(s)	57, 450
Hpy8I	GTNNAC	5 cut(s)	185, 260, 299, 526, 595
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	5 cut(s)	110, 414, 421, 497, 611
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4IV	ACGT	3 cut(s)	95, 256, 317
HpyCH4V	TGCA	2 cut(s)	281, 329
HpyF10VI	GCNNNNNNNGC	4 cut(s)	329, 335, 338, 344
HpyF3I	CTNAG	2 cut(s)	249, 564
HpySE526I	ACGT	3 cut(s)	95, 256, 317
Hsp92II	CATG	2 cut(s)	373, 557
Kzo9I	GATC	2 cut(s)	20, 631
LmnI	GCTCC	2 cut(s)	38, 683
Lsp1109I	GCAGC	3 cut(s)	325, 341, 346
MaeI	CTAG	3 cut(s)	288, 363, 733
MaeII	ACGT	3 cut(s)	95, 256, 317
MaeIII	GTNAC	3 cut(s)	96, 269, 620
MalI	GATC	2 cut(s)	22, 633
MboI	GATC	2 cut(s)	20, 631
MboII	GAAGA	9 cut(s)	23, 72, 78, 81, 125, 169, 416, 436, 545
MhlI	GDGCHC	2 cut(s)	35, 133
MlsI	TGGCCA	1 cut(s)	552
MluCI	AATT	2 cut(s)	394, 641
MluNI	TGGCCA	1 cut(s)	552
MlyI	GAGTC	2 cut(s)	277, 556
MmeI	TCCRAC	1 cut(s)	444
Mox20I	TGGCCA	1 cut(s)	552
MscI	TGGCCA	1 cut(s)	552
MseI	TTAA	1 cut(s)	392
MslI	CAYNNNNRTG	1 cut(s)	276
Msp20I	TGGCCA	1 cut(s)	552
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	2 cut(s)	401, 480
MspR9I	CCNGG	3 cut(s)	388, 401, 692
MvaI	CCWGG	2 cut(s)	388, 692
MwoI	GCNNNNNNNGC	4 cut(s)	329, 335, 338, 344
NciI	CCSGG	1 cut(s)	401
NdeII	GATC	2 cut(s)	20, 631
NlaIII	CATG	2 cut(s)	373, 557
NlaIV	GGNNCC	1 cut(s)	379
NmuCI	GTSAC	1 cut(s)	269
NspV	TTCGAA	1 cut(s)	155
OliI	CACNNNNGTG	1 cut(s)	276
PaeR7I	CTCGAG	1 cut(s)	55
PfeI	GAWTC	6 cut(s)	193, 568, 636, 702, 707, 729
PfoI	TCCNGGA	1 cut(s)	399
PkrI	GCNGC	3 cut(s)	331, 340, 361
PleI	GAGTC	2 cut(s)	276, 556
PpsI	GAGTC	2 cut(s)	276, 556
Ppu21I	YACGTR	1 cut(s)	257
Psp124BI	GAGCTC	2 cut(s)	35, 133
Psp6I	CCWGG	2 cut(s)	386, 690
PspFI	CCCAGC	1 cut(s)	598
PspGI	CCWGG	2 cut(s)	386, 690
PspN4I	GGNNCC	1 cut(s)	379
PspPI	GGNCC	2 cut(s)	185, 377
PstI	CTGCAG	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
RseI	CAYNNNNRTG	1 cut(s)	276
SacI	GAGCTC	2 cut(s)	35, 133
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	3 cut(s)	330, 339, 360
Sau3AI	GATC	2 cut(s)	20, 631
Sau96I	GGNCC	2 cut(s)	185, 377
SchI	GAGTC	2 cut(s)	277, 556
ScrFI	CCNGG	3 cut(s)	388, 401, 692
SduI	GDGCHC	2 cut(s)	35, 133
SfcI	CTRYAG	1 cut(s)	327
Sfr274I	CTCGAG	1 cut(s)	55
SfuI	TTCGAA	1 cut(s)	155
SinI	GGWCC	2 cut(s)	185, 377
SlaI	CTCGAG	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	2 cut(s)	394, 641
SsiI	CCGC	1 cut(s)	440
SspMI	CTAG	3 cut(s)	288, 363, 733
SstI	GAGCTC	2 cut(s)	35, 133
StyD4I	CCNGG	3 cut(s)	386, 399, 690
TaaI	ACNGT	1 cut(s)	275
TaiI	ACGT	3 cut(s)	98, 259, 320
TaqI	TCGA	6 cut(s)	23, 56, 155, 220, 634, 705
TasI	AATT	2 cut(s)	394, 641
TfiI	GAWTC	6 cut(s)	193, 568, 636, 702, 707, 729
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TscAI	CASTG	3 cut(s)	90, 270, 609
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	3 cut(s)	329, 338, 359
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	4 cut(s)	546, 600, 681, 699
TspGWI	ACGGA	4 cut(s)	33, 390, 515, 666
TspRI	CASTG	3 cut(s)	90, 270, 609
VpaK11BI	GGWCC	2 cut(s)	185, 377
XagI	CCTNNNNNAGG	1 cut(s)	385
XapI	RAATTY	1 cut(s)	394
XhoI	CTCGAG	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	525
XspI	CTAG	3 cut(s)	288, 363, 733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.