Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16108235 .. 16110766

Gene Structure 2532 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1560 bp

ATGGCTGCTTCTTTTCTTACAATGGACAATAGCAGAACCAGACAAAACATGAATGGTTCTGCTAATTGGTCACAACAATCCGGAAGAACATCTACTTCCTCTTTGGAAGATCTTGAGATACCAAAGTTCAGATCTTTTGCTCCTTCTTCAATCTCTATCTCTCCTTCTCTTGTCTCTCCTTCCACTTGTTTCAGTCCCTCTCTTTTTCTCGATTCCCCTGCTTTTGTCTCCTCCTCTGCTAACGTTCTAGCTTCTCCAACCACAGGAGCTTTAATCACAAACGTAACTAACCAGAAAGGTATAAATGAAGGAGACAAGAGCAACAACAACAACTTTAACTTATTCGATTTCTCATTCCACACACAATCATCAGGAGTTTCTGCTCCGACCACAACTACAACTACAACTACAACTACAACAACAACAAACAGTTCTATCTTTCAATCTCAGGAACAACAGAAGAAGAACCAGTCAGAACAATGGAGCCAAACCGAGACTCGTCCAAACAATCAAGCTGTATCTTACAATGGAAGAGAGCAAAGGAAAGGAGAGGATGGTTACAATTGGAGAAAGTACGGACAAAAACAGGTGAAAGGAAGTGAGAATCCTCGGAGTTACTATAAGTGTACTTTCCCTAATTGTCCAACGAAGAAGAAAGTGGAGAGATCTTTGGAAGGTCAGATCACAGAGATTGTGTATAAAGGAAGCCACAACCATCCTAAACCTCAGTCTACTAGAAGATCTTCTTCGTCTTCTTCGACTTTTCATTCAGCTGTGTACAATGCCAGTTTGGATCATAATCGTCAAGCTTCTTCTGATCAGCCTAATTCCAATAATAGCTTTCATCAGTCTGATTCCTTTGGGATGCAACAAGAGGATAATACTACTTCTGATTCTGTTGGTGACGATGAGTTCGAACAAGGCTCATCGATTGTCAGCAGAGACGAAGAAGATTGTGGGAGTGAACCTGAAGCAAAGAGATGGAAAGGGGACAATGAAACAAATGGTGGGAATGGTGGTGGAAGCAAGACAGTGAGAGAGCCGAGAATCGTAGTGCAGACAACGAGTGATATTGACATTCTTGACGACGGTTACAGATGGAGAAAATACGGCCAGAAAGTCGTTAAGGGAAACCCAAATCCAAGAAGCTACTACAAGTGCACAACCATCGGTTGTCCAGTGAGGAAACATGTGGAGAGAGCATCACACGACATGAGAGCAGTAATCACAACCTACGAAGGGAAACACAACCACGATGTTCCTGCAGCTCGTGGTAGCGGTTACGCCACAAACAGAGCACCACAGGATTCGTCTTCAGTCCCGATTAGACCAGCTGCTATTGCTGGTCACTCCAACTACACTACTTCTTCTCAAGCACCATATACACTTCAGATGCTGCACAACAACAACACTAATACCGGGCCTTTTGGTTACGCCATGAACAACAATAACAACAACAGCAACCTTCAAACGCAACAAAACTTTGTTGGTGGTGGATTCTCTAGAGCAAAGGAAGAACCAAACGAGGAGACCTCATTTTTCGATTCGTTTATGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009403 GO:0009404 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009700 GO:0009889 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010035 GO:0010120 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010506 GO:0010508 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0031323 GO:0031325 GO:0031326 GO:0031329 GO:0031331 GO:0033554 GO:0034605 GO:0034641 GO:0042221 GO:0042430 GO:0042435 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044424 GO:0044464 GO:0044550 GO:0046217 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0070370 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

519

Amino Acids

57.18

Weight (kDa)

7.66

Isoelectric Point (pI)

55.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	184 - 240	3.3e-26	WRKY DNA -binding domain
WRKY	PF03106	362 - 419	5.6e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	731
AccIII	TCCGGA	1 cut(s)	80
AciI	CCGC	1 cut(s)	1278
AclI	AACGTT	1 cut(s)	243
AclWI	GGATC	1 cut(s)	801
AcoI	YGGCCR	1 cut(s)	1111
AcuI	CTGAAG	3 cut(s)	990, 1299, 1373
AfaI	GTAC	3 cut(s)	575, 628, 779
AfiI	CCNNNNNNNGG	2 cut(s)	263, 1239
AflIII	ACRYGT	1 cut(s)	1189
AgsI	TTSAA	3 cut(s)	150, 443, 1469
AluBI	AGCT	9 cut(s)	251, 269, 515, 773, 809, 840, 1149, 1268, 1334
AluI	AGCT	9 cut(s)	251, 269, 515, 773, 809, 840, 1149, 1268, 1334
Alw21I	GWGCWC	2 cut(s)	1163, 1300
Alw26I	GTCTC	6 cut(s)	178, 232, 306, 488, 936, 1523
Alw44I	GTGCAC	1 cut(s)	1159
AlwI	GGATC	1 cut(s)	801
AlwNI	CAGNNNCTG	1 cut(s)	1396
Aor13HI	TCCGGA	1 cut(s)	80
AoxI	GGCC	2 cut(s)	1111, 1421
ApaLI	GTGCAC	1 cut(s)	1159
ApeKI	GCWGC	4 cut(s)	5, 1265, 1334, 1396
ArsI	GACNNNNNNTTYG	2 cut(s)	896, 928
Asp700I	GAANNNNTTC	1 cut(s)	742
AspS9I	GGNCC	1 cut(s)	1421
AsuC2I	CCSGG	1 cut(s)	1420
AsuHPI	GGTGA	2 cut(s)	601, 914
AsuII	TTCGAA	1 cut(s)	915
BaeGI	GKGCMC	1 cut(s)	1163
BaeI	ACNNNNGTAYC	2 cut(s)	110, 143
BarI	GAAGNNNNNNTAC	2 cut(s)	76, 108
BauI	CACGAG	1 cut(s)	1269
BbsI	GAAGAC	2 cut(s)	744, 1305
Bbv12I	GWGCWC	2 cut(s)	1163, 1300
BbvI	GCAGC	3 cut(s)	1277, 1321, 1383
BccI	CCATC	5 cut(s)	548, 723, 975, 1092, 1175
BceAI	ACGGC	1 cut(s)	1126
BcgI	CGANNNNNNTGC	6 cut(s)	200, 234, 1150, 1184, 1244, 1278
BclI	TGATCA	1 cut(s)	817
BcnI	CCSGG	1 cut(s)	1420
BcoDI	GTCTC	6 cut(s)	178, 232, 306, 488, 936, 1523
BfaI	CTAG	3 cut(s)	248, 735, 1503
BfmI	CTRYAG	1 cut(s)	1263
BglII	AGATCT	4 cut(s)	109, 131, 665, 740
BisI	GCNGC	4 cut(s)	6, 1266, 1335, 1397
BlsI	GCNGC	4 cut(s)	7, 1267, 1336, 1398
Bme1390I	CCNGG	1 cut(s)	1420
BmgT120I	GGNCC	1 cut(s)	1421
BmiI	GGNNCC	1 cut(s)	485
BmrFI	CCNGG	1 cut(s)	1420
BmsI	GCATC	3 cut(s)	855, 1211, 1383
BpiI	GAAGAC	2 cut(s)	744, 1305
BplI	GAGNNNNNCTC	2 cut(s)	1517, 1549
Bpu14I	TTCGAA	1 cut(s)	915
BpuEI	CTTGAG	2 cut(s)	134, 1356
BpuMI	CCSGG	1 cut(s)	1420
Bsa29I	ATCGAT	1 cut(s)	929
BsaBI	GATNNNNATC	1 cut(s)	798
BsaI	GGTCTC	1 cut(s)	1523
BsaJI	CCNNGG	1 cut(s)	608
BsaWI	WCCGGW	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 1239
Bse1I	ACTGG	3 cut(s)	469, 786, 1178
Bse8I	GATNNNNATC	1 cut(s)	798
BseAI	TCCGGA	1 cut(s)	80
BseCI	ATCGAT	1 cut(s)	929
BseDI	CCNNGG	1 cut(s)	608
BseGI	GGATG	3 cut(s)	559, 715, 870
BseJI	GATNNNNATC	1 cut(s)	798
BseLI	CCNNNNNNNGG	2 cut(s)	263, 1239
BseMII	CTCAG	2 cut(s)	461, 740
BseNI	ACTGG	3 cut(s)	469, 786, 1178
BseRI	GAGGAG	3 cut(s)	220, 223, 1541
BseSI	GKGCMC	1 cut(s)	1163
BseXI	GCAGC	3 cut(s)	1277, 1321, 1383
BsgI	GTGCAG	2 cut(s)	1076, 1382
BshFI	GGCC	2 cut(s)	1113, 1423
BshVI	ATCGAT	1 cut(s)	929
BsiHKAI	GWGCWC	2 cut(s)	1163, 1300
BsiSI	CCGG	2 cut(s)	81, 1419
BslFI	GGGAC	3 cut(s)	180, 1004, 1304
BslI	CCNNNNNNNGG	2 cut(s)	263, 1239
BsmAI	GTCTC	6 cut(s)	178, 232, 306, 488, 936, 1523
BsmBI	CGTCTC	1 cut(s)	936
BsmFI	GGGAC	3 cut(s)	180, 1004, 1304
BsnI	GGCC	2 cut(s)	1113, 1423
Bso31I	GGTCTC	1 cut(s)	1523
Bsp119I	TTCGAA	1 cut(s)	915
Bsp1286I	GDGCHC	2 cut(s)	1163, 1300
Bsp13I	TCCGGA	1 cut(s)	80
Bsp1407I	TGTACA	1 cut(s)	777
Bsp143I	GATC	7 cut(s)	109, 131, 665, 681, 740, 793, 817
BspACI	CCGC	1 cut(s)	1278
BspANI	GGCC	2 cut(s)	1113, 1423
BspCNI	CTCAG	2 cut(s)	460, 739
BspDI	ATCGAT	1 cut(s)	929
BspEI	TCCGGA	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	485
BspMAI	CTGCAG	1 cut(s)	1267
BspPI	GGATC	1 cut(s)	801
BspT104I	TTCGAA	1 cut(s)	915
BspTNI	GGTCTC	1 cut(s)	1523
BsrGI	TGTACA	1 cut(s)	777
BsrI	ACTGG	3 cut(s)	469, 786, 1178
BssECI	CCNNGG	1 cut(s)	608
BssMI	GATC	7 cut(s)	109, 131, 665, 681, 740, 793, 817
BssSI	CACGAG	1 cut(s)	1269
Bst2BI	CACGAG	1 cut(s)	1269
Bst4CI	ACNGT	3 cut(s)	431, 1033, 1091
Bst6I	CTCTTC	1 cut(s)	526
BstAUI	TGTACA	1 cut(s)	777
BstBI	TTCGAA	1 cut(s)	915
BstDEI	CTNAG	2 cut(s)	447, 726
BstF5I	GGATG	3 cut(s)	559, 715, 870
BstKTI	GATC	7 cut(s)	112, 134, 668, 684, 743, 796, 820
BstMAI	GTCTC	6 cut(s)	178, 232, 306, 488, 936, 1523
BstMBI	GATC	7 cut(s)	109, 131, 665, 681, 740, 793, 817
BstMWI	GCNNNNNNNGC	1 cut(s)	1340
BstNSI	RCATGY	1 cut(s)	1193
BstSCI	CCNGG	1 cut(s)	1418
BstSFI	CTRYAG	1 cut(s)	1263
BstSLI	GKGCMC	1 cut(s)	1163
BstV1I	GCAGC	3 cut(s)	1277, 1321, 1383
BstV2I	GAAGAC	2 cut(s)	744, 1305
BstX2I	RGATCY	4 cut(s)	109, 131, 665, 740
BstYI	RGATCY	4 cut(s)	109, 131, 665, 740
Bsu15I	ATCGAT	1 cut(s)	929
BsuRI	GGCC	2 cut(s)	1113, 1423
BsuTUI	ATCGAT	1 cut(s)	929
BtsCI	GGATG	3 cut(s)	559, 715, 870
BtsIMutI	CAGTG	2 cut(s)	1038, 1185
CaiI	CAGNNNCTG	1 cut(s)	1396
Cfr13I	GGNCC	1 cut(s)	1421
ClaI	ATCGAT	1 cut(s)	929
Csp6I	GTAC	3 cut(s)	574, 627, 778
CviAII	CATG	4 cut(s)	49, 1190, 1213, 1438
CviQI	GTAC	3 cut(s)	574, 627, 778
DdeI	CTNAG	2 cut(s)	447, 726
DpnI	GATC	7 cut(s)	111, 133, 667, 683, 742, 795, 819
DpnII	GATC	7 cut(s)	109, 131, 665, 681, 740, 793, 817
EaeI	YGGCCR	1 cut(s)	1111
Eam1104I	CTCTTC	1 cut(s)	526
EarI	CTCTTC	1 cut(s)	526
Eco31I	GGTCTC	1 cut(s)	1523
Eco57I	CTGAAG	3 cut(s)	990, 1299, 1373
Esp3I	CGTCTC	1 cut(s)	936
FaeI	CATG	4 cut(s)	52, 1193, 1216, 1441
FalI	AAGNNNNNCTT	2 cut(s)	730, 762
FaqI	GGGAC	3 cut(s)	180, 1004, 1304
FatI	CATG	4 cut(s)	48, 1189, 1212, 1437
FbaI	TGATCA	1 cut(s)	817
FblI	GTMKAC	1 cut(s)	731
Fnu4HI	GCNGC	4 cut(s)	6, 1266, 1335, 1397
FokI	GGATG	3 cut(s)	566, 702, 877
Fsp4HI	GCNGC	4 cut(s)	6, 1266, 1335, 1397
FspBI	CTAG	3 cut(s)	248, 735, 1503
GluI	GCNGC	4 cut(s)	6, 1266, 1335, 1397
HaeIII	GGCC	2 cut(s)	1113, 1423
HapII	CCGG	2 cut(s)	81, 1419
Hin1II	CATG	4 cut(s)	52, 1193, 1216, 1441
HindIII	AAGCTT	1 cut(s)	807
HinfI	GANTC	9 cut(s)	212, 496, 604, 854, 893, 1047, 1307, 1497, 1544
HpaII	CCGG	2 cut(s)	81, 1419
HphI	GGTGA	2 cut(s)	601, 914
Hpy166II	GTNNAC	5 cut(s)	627, 732, 778, 965, 1161
Hpy188I	TCNGA	9 cut(s)	131, 387, 475, 612, 681, 817, 853, 892, 1392
Hpy188III	TCNNGA	8 cut(s)	81, 113, 209, 372, 449, 1082, 1321, 1503
Hpy8I	GTNNAC	5 cut(s)	627, 732, 778, 965, 1161
Hpy99I	CGWCG	1 cut(s)	1091
HpyAV	CCTTC	7 cut(s)	153, 174, 189, 302, 668, 1232, 1475
HpyCH4III	ACNGT	3 cut(s)	431, 1033, 1091
HpyCH4IV	ACGT	2 cut(s)	243, 282
HpyCH4V	TGCA	5 cut(s)	868, 1057, 1161, 1265, 1399
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1340
HpyF3I	CTNAG	2 cut(s)	447, 726
HpySE526I	ACGT	2 cut(s)	243, 282
Hsp92II	CATG	4 cut(s)	52, 1193, 1216, 1441
Kpn2I	TCCGGA	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	817
Kzo9I	GATC	7 cut(s)	109, 131, 665, 681, 740, 793, 817
LmnI	GCTCC	4 cut(s)	145, 266, 388, 483
Lsp1109I	GCAGC	3 cut(s)	1277, 1321, 1383
LweI	GCATC	3 cut(s)	855, 1211, 1383
MaeI	CTAG	3 cut(s)	248, 735, 1503
MaeII	ACGT	2 cut(s)	243, 282
MaeIII	GTNAC	9 cut(s)	69, 283, 557, 614, 902, 1091, 1280, 1346, 1430
MalI	GATC	7 cut(s)	111, 133, 667, 683, 742, 795, 819
MboI	GATC	7 cut(s)	109, 131, 665, 681, 740, 793, 817
MfeI	CAATTG	1 cut(s)	562
MflI	RGATCY	4 cut(s)	109, 131, 665, 740
MhlI	GDGCHC	2 cut(s)	1163, 1300
MluCI	AATT	4 cut(s)	64, 562, 637, 826
MlyI	GAGTC	1 cut(s)	490
MmeI	TCCRAC	4 cut(s)	281, 410, 668, 1377
MroI	TCCGGA	1 cut(s)	80
MroXI	GAANNNNTTC	1 cut(s)	742
MseI	TTAA	3 cut(s)	272, 336, 1125
MspA1I	CMGCKG	2 cut(s)	773, 1334
MspI	CCGG	2 cut(s)	81, 1419
MspR9I	CCNGG	1 cut(s)	1420
MunI	CAATTG	1 cut(s)	562
MwoI	GCNNNNNNNGC	1 cut(s)	1340
NciI	CCSGG	1 cut(s)	1420
NdeII	GATC	7 cut(s)	109, 131, 665, 681, 740, 793, 817
NlaIII	CATG	4 cut(s)	52, 1193, 1216, 1441
NlaIV	GGNNCC	1 cut(s)	485
NmeAIII	GCCGAG	1 cut(s)	1068
NmuCI	GTSAC	3 cut(s)	69, 902, 1346
NspI	RCATGY	1 cut(s)	1193
NspV	TTCGAA	1 cut(s)	915
PciI	ACATGT	1 cut(s)	1189
PcsI	WCGNNNNNNNCGW	2 cut(s)	755, 912
PdmI	GAANNNNTTC	1 cut(s)	742
PfeI	GAWTC	8 cut(s)	212, 604, 854, 893, 1047, 1307, 1497, 1544
PkrI	GCNGC	4 cut(s)	7, 1267, 1336, 1398
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
PscI	ACATGT	1 cut(s)	1189
Psp1406I	AACGTT	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	485
PspPI	GGNCC	1 cut(s)	1421
PstI	CTGCAG	1 cut(s)	1267
PstNI	CAGNNNCTG	1 cut(s)	1396
PsuI	RGATCY	4 cut(s)	109, 131, 665, 740
PvuII	CAGCTG	2 cut(s)	773, 1334
RsaI	GTAC	3 cut(s)	575, 628, 779
RsaNI	GTAC	3 cut(s)	574, 627, 778
SaqAI	TTAA	3 cut(s)	272, 336, 1125
SatI	GCNGC	4 cut(s)	6, 1266, 1335, 1397
Sau3AI	GATC	7 cut(s)	109, 131, 665, 681, 740, 793, 817
Sau96I	GGNCC	1 cut(s)	1421
SchI	GAGTC	1 cut(s)	490
ScrFI	CCNGG	1 cut(s)	1420
SduI	GDGCHC	2 cut(s)	1163, 1300
SfaNI	GCATC	3 cut(s)	855, 1211, 1383
SfcI	CTRYAG	1 cut(s)	1263
SfuI	TTCGAA	1 cut(s)	915
SmlI	CTYRAG	2 cut(s)	113, 1371
SmoI	CTYRAG	2 cut(s)	113, 1371
Sse9I	AATT	4 cut(s)	64, 562, 637, 826
SsiI	CCGC	1 cut(s)	1278
SspMI	CTAG	3 cut(s)	248, 735, 1503
StyD4I	CCNGG	1 cut(s)	1418
TaaI	ACNGT	3 cut(s)	431, 1033, 1091
TaiI	ACGT	2 cut(s)	246, 285
TaqI	TCGA	6 cut(s)	210, 345, 758, 915, 929, 1542
TasI	AATT	4 cut(s)	64, 562, 637, 826
TatI	WGTACW	2 cut(s)	626, 777
TfiI	GAWTC	8 cut(s)	212, 604, 854, 893, 1047, 1307, 1497, 1544
Tru1I	TTAA	3 cut(s)	272, 336, 1125
Tru9I	TTAA	3 cut(s)	272, 336, 1125
TscAI	CASTG	2 cut(s)	1038, 1185
TseFI	GTSAC	3 cut(s)	69, 902, 1346
TseI	GCWGC	4 cut(s)	5, 1265, 1334, 1396
Tsp45I	GTSAC	3 cut(s)	69, 902, 1346
TspDTI	ATGAA	6 cut(s)	65, 321, 755, 833, 1011, 1454
TspGWI	ACGGA	1 cut(s)	591
TspRI	CASTG	2 cut(s)	1038, 1185
VneI	GTGCAC	1 cut(s)	1159
XbaI	TCTAGA	1 cut(s)	1502
XceI	RCATGY	1 cut(s)	1193
XmiI	GTMKAC	1 cut(s)	731
XmnI	GAANNNNTTC	1 cut(s)	742
XspI	CTAG	3 cut(s)	248, 735, 1503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.