AT2G43470
MYB Family

Protein of unknown function (DUF3755)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
N/A
Physical Location & Seq
Reverse (-)
18049799 .. 18051589
1791 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G43470.1

Sequence Viewer

Length: 633 bp
ATGAATCATAATAATGCCTACTCCGGCAACTTGACCACACCGTCGGAGAGCTCATTGTTGATAAGTCGCTCGGGAATCGCCTTGAATTGGACCACTGCAGAAGACGACATTCTGATTCAACTCCTTGATAGTTATTCGTCGGACTCGCGTAGTGCTGTTACACGTTACTTGCAAATCCTCGAATTCCTTCAGGACAAGACTATCAGGGACGTTGCTGCACGTAGCAGATGGATATATAACAAAAAAATCGCCAAGAAAAAAAAAGAAGATCACAATGGATTGGGAACAACCAGAGTTGACAACGAGGAGATTGTTAATATGGTGCTGGCATCACAAGTGTATCAACCATCACAGGTGTTTCAACCATCTCAACATGGGGTTCACAATGAGCTTCTTAATCATAATAAGCAATGGTTCAACCAGATTTATGCAAATCTCACATTCTTAAACCTCACAGACAACTTAGACCTTTTCAGAAAAATCCGGGAGAACATCAAAAGCCTTCTCAAAGATTTGAATGAGAATGTGTCGGAGACATGGAAGAATATGCCATCATCATTGCCGGAGAAGTTGAACGATGAACTATTTCTTGGCCTAGATAAAGCAATCCCATCTACATCAAATCTACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3755 Myb_DNA-binding

Protein Analysis

210

Amino Acids

24.05

Weight (kDa)

6.21

Isoelectric Point (pI)

54.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 40
AccII CGCG 1 cut(s) 148
AcsI RAATTY 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 173
AfiI CCNNNNNNNGG 1 cut(s) 87
AflIII ACRYGT 1 cut(s) 161
AgsI TTSAA 6 cut(s) 85, 119, 362, 418, 517, 574
AjuI GAANNNNNNNTTGG 2 cut(s) 573, 605
AluBI AGCT 2 cut(s) 51, 391
AluI AGCT 2 cut(s) 51, 391
Alw21I GWGCWC 1 cut(s) 53
Alw26I GTCTC 1 cut(s) 527
Ama87I CYCGRG 1 cut(s) 70
AoxI GGCC 1 cut(s) 592
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 182
Asp700I GAANNNNTTC 2 cut(s) 186, 585
AspS9I GGNCC 1 cut(s) 90
AsuC2I CCSGG 1 cut(s) 485
AvaI CYCGRG 1 cut(s) 70
AvaII GGWCC 1 cut(s) 90
BaeI ACNNNNGTAYC 2 cut(s) 323, 356
BanII GRGCYC 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 202
BccI CCATC 5 cut(s) 222, 355, 373, 559, 619
BcnI CCSGG 1 cut(s) 485
BcoDI GTCTC 1 cut(s) 527
BfaI CTAG 1 cut(s) 596
BfmI CTRYAG 1 cut(s) 96
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 485
Bme18I GGWCC 1 cut(s) 90
BmeT110I CYCGRG 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 485
BmsI GCATC 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 108
BpuMI CCSGG 1 cut(s) 485
BsaAI YACGTR 1 cut(s) 221
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse3DI GCAATG 2 cut(s) 416, 557
BseLI CCNNNNNNNGG 1 cut(s) 87
BseMI GCAATG 2 cut(s) 416, 557
BseRI GAGGAG 1 cut(s) 320
BseXI GCAGC 1 cut(s) 202
BsgI GTGCAG 1 cut(s) 201
Bsh1236I CGCG 1 cut(s) 148
BshFI GGCC 1 cut(s) 594
BsiHKAI GWGCWC 1 cut(s) 53
BsiHKCI CYCGRG 1 cut(s) 70
BsiSI CCGG 3 cut(s) 24, 484, 563
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 87
BsmAI GTCTC 1 cut(s) 527
BsmFI GGGAC 1 cut(s) 221
BsnI GGCC 1 cut(s) 594
BsoBI CYCGRG 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 1 cut(s) 268
BspANI GGCC 1 cut(s) 594
BspFNI CGCG 1 cut(s) 148
BspMAI CTGCAG 1 cut(s) 100
BsrDI GCAATG 2 cut(s) 416, 557
BssMI GATC 1 cut(s) 268
Bst4CI ACNGT 1 cut(s) 42
BstBAI YACGTR 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 1 cut(s) 463
BstFNI CGCG 1 cut(s) 148
BstKTI GATC 1 cut(s) 271
BstMAI GTCTC 1 cut(s) 527
BstMBI GATC 1 cut(s) 268
BstSCI CCNGG 1 cut(s) 483
BstSFI CTRYAG 1 cut(s) 96
BstUI CGCG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 202
BstV2I GAAGAC 1 cut(s) 108
BsuRI GGCC 1 cut(s) 594
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 327
Cfr13I GGNCC 1 cut(s) 90
CviAII CATG 3 cut(s) 374, 537, 630
CviJI RGCY 4 cut(s) 51, 391, 501, 594
CviKI_1 RGCY 4 cut(s) 51, 391, 501, 594
DdeI CTNAG 1 cut(s) 463
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
DrdI GACNNNNNNGTC 1 cut(s) 40
DseDI GACNNNNNNGTC 1 cut(s) 40
Ecl136II GAGCTC 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 90
Eco53kI GAGCTC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 173
Eco88I CYCGRG 1 cut(s) 70
EcoICRI GAGCTC 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 182
EcoT38I GRGCYC 1 cut(s) 53
FaeI CATG 3 cut(s) 377, 540, 633
FaqI GGGAC 1 cut(s) 221
FatI CATG 3 cut(s) 373, 536, 629
Fnu4HI GCNGC 1 cut(s) 216
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 1 cut(s) 596
GluI GCNGC 1 cut(s) 216
HaeIII GGCC 1 cut(s) 594
HapII CCGG 3 cut(s) 24, 484, 563
Hin1II CATG 3 cut(s) 377, 540, 633
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HinfI GANTC 4 cut(s) 4, 75, 115, 143
HpaII CCGG 3 cut(s) 24, 484, 563
Hpy166II GTNNAC 2 cut(s) 298, 382
Hpy188I TCNGA 5 cut(s) 46, 114, 142, 476, 532
Hpy188III TCNNGA 2 cut(s) 72, 191
Hpy8I GTNNAC 2 cut(s) 298, 382
Hpy99I CGWCG 2 cut(s) 46, 142
HpyAV CCTTC 2 cut(s) 197, 512
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4IV ACGT 3 cut(s) 163, 210, 220
HpyCH4V TGCA 4 cut(s) 98, 172, 218, 431
HpyF3I CTNAG 1 cut(s) 463
HpySE526I ACGT 3 cut(s) 163, 210, 220
Hsp92II CATG 3 cut(s) 377, 540, 633
Kzo9I GATC 1 cut(s) 268
LpnPI CCDG 9 cut(s) 37, 176, 190, 304, 311, 338, 434, 497, 576
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 1 cut(s) 338
MaeI CTAG 1 cut(s) 596
MaeII ACGT 3 cut(s) 163, 210, 220
MaeIII GTNAC 2 cut(s) 157, 164
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 3 cut(s) 113, 278, 553
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 2 cut(s) 85, 182
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 3 cut(s) 24, 120, 510
MnlI CCTC 3 cut(s) 188, 298, 461
MroXI GAANNNNTTC 2 cut(s) 186, 585
MseI TTAA 3 cut(s) 315, 396, 446
MslI CAYNNNNRTG 1 cut(s) 12
MspI CCGG 3 cut(s) 24, 484, 563
MspR9I CCNGG 1 cut(s) 485
MvnI CGCG 1 cut(s) 148
NciI CCSGG 1 cut(s) 485
NdeII GATC 1 cut(s) 268
NlaIII CATG 3 cut(s) 377, 540, 633
PdmI GAANNNNTTC 2 cut(s) 186, 585
PfeI GAWTC 3 cut(s) 4, 75, 115
PfoI TCCNGGA 1 cut(s) 483
PkrI GCNGC 1 cut(s) 217
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
Ppu21I YACGTR 1 cut(s) 221
Psp124BI GAGCTC 1 cut(s) 53
PspPI GGNCC 1 cut(s) 90
PstI CTGCAG 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 12
SacI GAGCTC 1 cut(s) 53
SaqAI TTAA 3 cut(s) 315, 396, 446
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 1 cut(s) 90
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 485
SduI GDGCHC 1 cut(s) 53
SetI ASST 8 cut(s) 53, 166, 213, 223, 357, 393, 453, 471
SfaNI GCATC 1 cut(s) 338
SfcI CTRYAG 1 cut(s) 96
SinI GGWCC 1 cut(s) 90
SmiMI CAYNNNNRTG 1 cut(s) 12
Sse9I AATT 2 cut(s) 85, 182
SspMI CTAG 1 cut(s) 596
SstI GAGCTC 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 483
TaaI ACNGT 1 cut(s) 42
TaiI ACGT 3 cut(s) 166, 213, 223
TaqI TCGA 1 cut(s) 180
TasI AATT 2 cut(s) 85, 182
TfiI GAWTC 3 cut(s) 4, 75, 115
Tru1I TTAA 3 cut(s) 315, 396, 446
Tru9I TTAA 3 cut(s) 315, 396, 446
TscAI CASTG 1 cut(s) 100
TseI GCWGC 1 cut(s) 215
TspDTI ATGAA 2 cut(s) 17, 594
TspRI CASTG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 90
XapI RAATTY 1 cut(s) 182
XmnI GAANNNNTTC 2 cut(s) 186, 585
XspI CTAG 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.