Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

19404802 .. 19407098

Gene Structure 2297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGAGTTTACAGATTTCTCAAAGACGAGTTTTTACTACCCGTCGTCACAAAGCGTTTGGGATTTCGGAGATTTAGCGGCGGCGGAGAGGCATTCTTTAGGGTTCATGGAGTTATTAAGTTCTCAGCAGCATCAAGACTTTGCTACTGTTTCTCCTCATTCCTTCCTTCTCCAAACGTCTCAACCGCAAACGCAAACGCAACCATCGGCGAAGCTGTCTTCAAGTATCATTCAAGCTCCACCGTCAGAGCAATTAGTGACGTCAAAGGTGGAGTCTTTGTGTTCGGATCATTTGTTGATAAACCCACCGGCGACTCCTAACTCGTCATCGATTTCGTCTGCTTCAAGCGAGGCTCTAAATGAAGAGAAACCGAAAACAGAAGACAATGAAGAAGAAGGAGGTGAAGATCAACAAGAGAAGAGTCATACTAAGAAACAGTTGAAAGCAAAGAAGAATAATCAGAAGAGACAGAGAGAGGCAAGAGTCGCATTCATGACAAAGAGTGAAGTTGATCATCTCGAAGATGGTTATCGCTGGCGAAAATATGGTCAAAAAGCTGTCAAAAACAGTCCTTTTCCCAGGAGTTACTACCGTTGCACAACGGCTTCATGTAACGTGAAGAAGAGAGTGGAGAGATCATTCAGAGATCCAAGCACTGTGGTTACAACCTACGAAGGTCAACACACTCACATTAGTCCACTCACGTCTCGTCCTATTTCCACTGGAGGTTTCTTCGGATCGTCAGGAGCTGCTTCGAGTCTCGGTAATGGTTGCTTTGGGTTTCCTATTGATGGCTCCACGTTAATCTCTCCTCAGTTCCAACAGCTTGTCCAATACCATCACCAACAGCAGCAACAAGAACTCATGTCTTGTTTTGGAGGAGTCAACGAGTACCTTAATAGCCACGCTAATGAGTATGGTGATGATAATCGTGTGAAGAAGAGTCGAGTTTTGGTTAAAGATAATGGACTTCTGCAAGATGTTGTTCCGTCTCATATGTTGAAGGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043207 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

337

Amino Acids

37.68

Weight (kDa)

6.47

Isoelectric Point (pI)

60.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	174 - 230	6.1e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	263
AciI	CCGC	4 cut(s)	77, 80, 83, 185
AclWI	GGATC	3 cut(s)	294, 641, 745
AcyI	GRCGYC	1 cut(s)	260
AfaI	GTAC	1 cut(s)	893
AfiI	CCNNNNNNNGG	1 cut(s)	791
AgsI	TTSAA	5 cut(s)	222, 233, 345, 442, 1003
AjiI	CACGTC	1 cut(s)	705
AjnI	CCWGG	1 cut(s)	578
AluBI	AGCT	5 cut(s)	214, 236, 557, 749, 826
AluI	AGCT	5 cut(s)	214, 236, 557, 749, 826
Alw26I	GTCTC	5 cut(s)	183, 460, 711, 764, 996
AlwI	GGATC	3 cut(s)	294, 641, 745
AlwNI	CAGNNNCTG	1 cut(s)	749
ApeKI	GCWGC	3 cut(s)	127, 749, 850
ArsI	GACNNNNNNTTYG	4 cut(s)	257, 289, 532, 564
AsuHPI	GGTGA	3 cut(s)	413, 833, 932
BbsI	GAAGAC	2 cut(s)	210, 387
BbvI	GCAGC	3 cut(s)	139, 736, 862
BccI	CCATC	4 cut(s)	211, 518, 785, 846
BceAI	ACGGC	1 cut(s)	618
BciT130I	CCWGG	1 cut(s)	580
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	5 cut(s)	183, 460, 711, 764, 996
BisI	GCNGC	5 cut(s)	78, 81, 128, 750, 851
BlsI	GCNGC	5 cut(s)	79, 82, 129, 751, 852
Bme1390I	CCNGG	1 cut(s)	580
BmgBI	CACGTC	1 cut(s)	705
BmiI	GGNNCC	1 cut(s)	796
BmrFI	CCNGG	1 cut(s)	580
BmsI	GCATC	1 cut(s)	139
BpiI	GAAGAC	2 cut(s)	210, 387
BpmI	CTGGAG	1 cut(s)	744
Bsa29I	ATCGAT	1 cut(s)	329
BsaBI	GATNNNNATC	2 cut(s)	528, 927
BsaHI	GRCGYC	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	578
BsaXI	ACNNNNNCTCC	4 cut(s)	136, 166, 263, 293
Bsc4I	CCNNNNNNNGG	1 cut(s)	791
Bse118I	RCCGGY	1 cut(s)	307
Bse1I	ACTGG	1 cut(s)	727
Bse8I	GATNNNNATC	2 cut(s)	528, 927
BseBI	CCWGG	1 cut(s)	580
BseCI	ATCGAT	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	578
BseJI	GATNNNNATC	2 cut(s)	528, 927
BseLI	CCNNNNNNNGG	1 cut(s)	791
BseMII	CTCAG	2 cut(s)	137, 827
BseNI	ACTGG	1 cut(s)	727
BseRI	GAGGAG	3 cut(s)	144, 801, 894
BseXI	GCAGC	3 cut(s)	139, 736, 862
BshVI	ATCGAT	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	791
BsmAI	GTCTC	5 cut(s)	183, 460, 711, 764, 996
BsmBI	CGTCTC	3 cut(s)	183, 711, 996
BsmI	GAATGC	2 cut(s)	91, 488
Bsp143I	GATC	6 cut(s)	286, 406, 511, 635, 646, 737
BspACI	CCGC	4 cut(s)	77, 80, 83, 185
BspCNI	CTCAG	2 cut(s)	136, 826
BspDI	ATCGAT	1 cut(s)	329
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	1 cut(s)	796
BspPI	GGATC	3 cut(s)	294, 641, 745
BsrFI	RCCGGY	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	727
BssAI	RCCGGY	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	578
BssMI	GATC	6 cut(s)	286, 406, 511, 635, 646, 737
BssNI	GRCGYC	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	580
Bst4CI	ACNGT	6 cut(s)	148, 243, 438, 569, 593, 658
Bst6I	CTCTTC	6 cut(s)	357, 413, 458, 617, 935, 1002
BstACI	GRCGYC	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	536
BstDEI	CTNAG	3 cut(s)	123, 429, 813
BstKTI	GATC	6 cut(s)	289, 409, 514, 638, 649, 740
BstMAI	GTCTC	5 cut(s)	183, 460, 711, 764, 996
BstMBI	GATC	6 cut(s)	286, 406, 511, 635, 646, 737
BstMWI	GCNNNNNNNGC	1 cut(s)	485
BstNI	CCWGG	1 cut(s)	580
BstSCI	CCNGG	1 cut(s)	578
BstV1I	GCAGC	3 cut(s)	139, 736, 862
BstV2I	GAAGAC	2 cut(s)	210, 387
BstX2I	RGATCY	1 cut(s)	646
BstYI	RGATCY	1 cut(s)	646
Bsu15I	ATCGAT	1 cut(s)	329
BsuTUI	ATCGAT	1 cut(s)	329
BtrI	CACGTC	1 cut(s)	705
BtsIMutI	CAGTG	2 cut(s)	654, 720
Cac8I	GCNNGC	1 cut(s)	536
CaiI	CAGNNNCTG	1 cut(s)	749
CciI	TCATGA	1 cut(s)	492
Cfr10I	RCCGGY	1 cut(s)	307
ClaI	ATCGAT	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	892
CspCI	CAANNNNNGTGG	2 cut(s)	639, 674
CviAII	CATG	4 cut(s)	106, 493, 609, 865
CviJI	RGCY	9 cut(s)	214, 236, 353, 557, 605, 749, 795, 826, 903
CviKI_1	RGCY	9 cut(s)	214, 236, 353, 557, 605, 749, 795, 826, 903
CviQI	GTAC	1 cut(s)	892
DdeI	CTNAG	3 cut(s)	123, 429, 813
DpnI	GATC	6 cut(s)	288, 408, 513, 637, 648, 739
DpnII	GATC	6 cut(s)	286, 406, 511, 635, 646, 737
Eam1104I	CTCTTC	6 cut(s)	357, 413, 458, 617, 935, 1002
EarI	CTCTTC	6 cut(s)	357, 413, 458, 617, 935, 1002
EciI	GGCGGA	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	578
Esp3I	CGTCTC	3 cut(s)	183, 711, 996
FaeI	CATG	4 cut(s)	109, 496, 612, 868
FaiI	YATR	9 cut(s)	107, 426, 494, 546, 610, 866, 918, 996, 998
FatI	CATG	4 cut(s)	105, 492, 608, 864
FauNDI	CATATG	1 cut(s)	996
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	5 cut(s)	78, 81, 128, 750, 851
Fsp4HI	GCNGC	5 cut(s)	78, 81, 128, 750, 851
GluI	GCNGC	5 cut(s)	78, 81, 128, 750, 851
GsuI	CTGGAG	1 cut(s)	744
HapII	CCGG	1 cut(s)	308
Hin1I	GRCGYC	1 cut(s)	260
Hin1II	CATG	4 cut(s)	109, 496, 612, 868
HincII	GTYRAC	2 cut(s)	680, 886
HindII	GTYRAC	2 cut(s)	680, 886
HinfI	GANTC	7 cut(s)	272, 313, 421, 483, 757, 882, 943
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	3 cut(s)	413, 833, 932
Hpy166II	GTNNAC	4 cut(s)	9, 680, 698, 886
Hpy188I	TCNGA	6 cut(s)	68, 247, 286, 462, 644, 737
Hpy188III	TCNNGA	4 cut(s)	134, 493, 518, 744
Hpy8I	GTNNAC	4 cut(s)	9, 680, 698, 886
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	5 cut(s)	172, 176, 389, 668, 997
HpyCH4III	ACNGT	6 cut(s)	148, 243, 438, 569, 593, 658
HpyCH4IV	ACGT	5 cut(s)	176, 260, 615, 704, 800
HpyCH4V	TGCA	2 cut(s)	597, 976
HpyF10VI	GCNNNNNNNGC	1 cut(s)	485
HpyF3I	CTNAG	3 cut(s)	123, 429, 813
HpySE526I	ACGT	5 cut(s)	176, 260, 615, 704, 800
Hsp92I	GRCGYC	1 cut(s)	260
Hsp92II	CATG	4 cut(s)	109, 496, 612, 868
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	6 cut(s)	286, 406, 511, 635, 646, 737
LmnI	GCTCC	3 cut(s)	241, 746, 800
LpnPI	CCDG	6 cut(s)	321, 520, 565, 592, 708, 729
Lsp1109I	GCAGC	3 cut(s)	139, 736, 862
LweI	GCATC	1 cut(s)	139
MaeII	ACGT	5 cut(s)	176, 260, 615, 704, 800
MaeIII	GTNAC	5 cut(s)	45, 256, 584, 611, 661
MalI	GATC	6 cut(s)	288, 408, 513, 637, 648, 739
MboI	GATC	6 cut(s)	286, 406, 511, 635, 646, 737
MflI	RGATCY	1 cut(s)	646
MluCI	AATT	1 cut(s)	251
MlyI	GAGTC	7 cut(s)	281, 307, 430, 492, 766, 891, 952
MmeI	TCCRAC	1 cut(s)	844
MnlI	CCTC	8 cut(s)	81, 165, 343, 392, 469, 719, 822, 872
MseI	TTAA	4 cut(s)	116, 803, 897, 957
MslI	CAYNNNNRTG	1 cut(s)	909
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	580
Mva1269I	GAATGC	2 cut(s)	91, 488
MvaI	CCWGG	1 cut(s)	580
MwoI	GCNNNNNNNGC	1 cut(s)	485
NdeI	CATATG	1 cut(s)	996
NdeII	GATC	6 cut(s)	286, 406, 511, 635, 646, 737
NlaIII	CATG	4 cut(s)	109, 496, 612, 868
NlaIV	GGNNCC	1 cut(s)	796
NmuCI	GTSAC	2 cut(s)	45, 256
PagI	TCATGA	1 cut(s)	492
PctI	GAATGC	2 cut(s)	91, 488
PkrI	GCNGC	5 cut(s)	79, 82, 129, 751, 852
PleI	GAGTC	7 cut(s)	280, 307, 429, 491, 765, 890, 951
PpsI	GAGTC	7 cut(s)	280, 307, 429, 491, 765, 890, 951
Psp6I	CCWGG	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	578
PspN4I	GGNNCC	1 cut(s)	796
PstNI	CAGNNNCTG	1 cut(s)	749
PsuI	RGATCY	1 cut(s)	646
RsaI	GTAC	1 cut(s)	893
RsaNI	GTAC	1 cut(s)	892
RseI	CAYNNNNRTG	1 cut(s)	909
SaqAI	TTAA	4 cut(s)	116, 803, 897, 957
SatI	GCNGC	5 cut(s)	78, 81, 128, 750, 851
Sau3AI	GATC	6 cut(s)	286, 406, 511, 635, 646, 737
SchI	GAGTC	7 cut(s)	281, 307, 430, 492, 766, 891, 952
ScrFI	CCNGG	1 cut(s)	580
SfaNI	GCATC	1 cut(s)	139
SgrAI	CRCCGGYG	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	909
Sse9I	AATT	1 cut(s)	251
SsiI	CCGC	4 cut(s)	77, 80, 83, 185
StyD4I	CCNGG	1 cut(s)	578
TaaI	ACNGT	6 cut(s)	148, 243, 438, 569, 593, 658
TaiI	ACGT	5 cut(s)	179, 263, 618, 707, 803
TaqI	TCGA	4 cut(s)	329, 519, 755, 946
TasI	AATT	1 cut(s)	251
TauI	GCSGC	2 cut(s)	80, 83
Tru1I	TTAA	4 cut(s)	116, 803, 897, 957
Tru9I	TTAA	4 cut(s)	116, 803, 897, 957
TscAI	CASTG	2 cut(s)	661, 727
TseFI	GTSAC	2 cut(s)	45, 256
TseI	GCWGC	3 cut(s)	127, 749, 850
Tsp45I	GTSAC	2 cut(s)	45, 256
TspDTI	ATGAA	5 cut(s)	94, 375, 402, 481, 597
TspGWI	ACGGA	1 cut(s)	978
TspRI	CASTG	2 cut(s)	661, 727
ZraI	GACGTC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.