Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

210119 .. 211804

Gene Structure 1686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGAGACGACGATGAAGAAGAAAGGGAGAGTGAAAGCGACAATAACGTCACAGAAAGAAGAAGAAGGAACAGTGAGAAAAGGACCTTGGACTATGGAAGAAGATTTCATCCTCTTTAATTACATCCTTAATCATGGTGAAGGTCTTTGGAACTCTGTCGCCAAAGCCTCTGGTCTAAAACGTACTGGAAAAAGTTGTCGGCTCCGGTGGCTGAACTATCTCCGACCAGATGTGCGGCGAGGGAACATAACCGAAGAAGAACAGCTTTTGATCATTCAGCTTCATGCTAAGCTTGGAAACAGGTGGTCGAAGATTGCGAAGCATCTTCCGGGAAGAACGGACAACGAGATAAAGAACTTCTGGAGGACAAAGATTCAGAGACACATGAAAGTGTCATCGGAAAATATGATGAATCATCAACATCATTGTTCGGGAAACTCACAGAGCTCGGGGATGACGACGCAAGGCAGCTCCGGCAAAGCCATAGACACGGCTGAGAGCTTCTCTCAGGCGAAGACGACGACGTTTAATGTGGTGGAACAACAGTCAAACGAGAATTACTGGAACGTTGAAGATCTGTGGCCCGTCCACTTGCTTAATGGTGACCACCATGTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

206

Amino Acids

23.72

Weight (kDa)

9.46

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	27 - 74	1e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	30 - 88	2.3e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	80 - 123	1.3e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	84 - 130	4.3e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	46
AciI	CCGC	1 cut(s)	235
AclI	AACGTT	1 cut(s)	567
AdeI	CACNNNGTG	1 cut(s)	613
AfaI	GTAC	1 cut(s)	184
AgsI	TTSAA	1 cut(s)	572
AjuI	GAANNNNNNNTTGG	2 cut(s)	70, 102
AluBI	AGCT	6 cut(s)	265, 280, 292, 447, 471, 501
AluI	AGCT	6 cut(s)	265, 280, 292, 447, 471, 501
Alw21I	GWGCWC	1 cut(s)	449
Alw26I	GTCTC	1 cut(s)	373
Ama87I	CYCGRG	1 cut(s)	448
AoxI	GGCC	1 cut(s)	581
ApeKI	GCWGC	1 cut(s)	468
AspS9I	GGNCC	2 cut(s)	83, 582
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	2 cut(s)	149, 614
AvaI	CYCGRG	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	521
Bbv12I	GWGCWC	1 cut(s)	449
BbvI	GCAGC	1 cut(s)	480
BceAI	ACGGC	1 cut(s)	507
BclI	TGATCA	1 cut(s)	270
BcnI	CCSGG	1 cut(s)	330
BcoDI	GTCTC	1 cut(s)	373
BglII	AGATCT	1 cut(s)	574
BisI	GCNGC	2 cut(s)	236, 469
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	2 cut(s)	237, 470
Bme1390I	CCNGG	1 cut(s)	330
Bme18I	GGWCC	1 cut(s)	83
BmeT110I	CYCGRG	1 cut(s)	448
BmgT120I	GGNCC	2 cut(s)	83, 582
BmiI	GGNNCC	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	1 cut(s)	331
BpiI	GAAGAC	1 cut(s)	521
BplI	GAGNNNNNCTC	4 cut(s)	488, 520, 490, 522
BpmI	CTGGAG	1 cut(s)	382
Bpu1102I	GCTNAGC	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	86
BsaWI	WCCGGW	1 cut(s)	204
Bse1I	ACTGG	2 cut(s)	190, 566
BseDI	CCNNGG	1 cut(s)	86
BseGI	GGATG	3 cut(s)	108, 123, 459
BseMII	CTCAG	2 cut(s)	486, 521
BseNI	ACTGG	2 cut(s)	190, 566
BseXI	GCAGC	1 cut(s)	480
BshFI	GGCC	1 cut(s)	583
BsiHKAI	GWGCWC	1 cut(s)	449
BsiHKCI	CYCGRG	1 cut(s)	448
BsiSI	CCGG	3 cut(s)	205, 329, 474
BsmAI	GTCTC	1 cut(s)	373
BsnI	GGCC	1 cut(s)	583
BsoBI	CYCGRG	1 cut(s)	448
Bsp1286I	GDGCHC	1 cut(s)	449
Bsp143I	GATC	2 cut(s)	270, 574
Bsp1720I	GCTNAGC	1 cut(s)	288
BspACI	CCGC	1 cut(s)	235
BspANI	GGCC	1 cut(s)	583
BspCNI	CTCAG	2 cut(s)	487, 520
BspLI	GGNNCC	1 cut(s)	203
BsrI	ACTGG	2 cut(s)	190, 566
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	2 cut(s)	270, 574
BssT1I	CCWWGG	1 cut(s)	86
Bst4CI	ACNGT	2 cut(s)	73, 546
BstDEI	CTNAG	3 cut(s)	288, 495, 507
BstEII	GGTNACC	1 cut(s)	602
BstF5I	GGATG	3 cut(s)	108, 123, 459
BstKTI	GATC	2 cut(s)	273, 577
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	2 cut(s)	270, 574
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 474
BstPI	GGTNACC	1 cut(s)	602
BstSCI	CCNGG	1 cut(s)	328
BstV1I	GCAGC	1 cut(s)	480
BstV2I	GAAGAC	1 cut(s)	521
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
BsuRI	GGCC	1 cut(s)	583
BtsCI	GGATG	3 cut(s)	108, 123, 459
BtsIMutI	CAGTG	1 cut(s)	78
Cfr13I	GGNCC	2 cut(s)	83, 582
CseI	GACGC	1 cut(s)	469
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	4 cut(s)	134, 284, 385, 611
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	3 cut(s)	288, 495, 507
DpnI	GATC	2 cut(s)	272, 576
DpnII	GATC	2 cut(s)	270, 574
DraIII	CACNNNGTG	1 cut(s)	613
DrdI	GACNNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	46
Ecl136II	GAGCTC	1 cut(s)	447
Eco130I	CCWWGG	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	449
Eco47I	GGWCC	1 cut(s)	83
Eco53kI	GAGCTC	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	448
Eco91I	GGTNACC	1 cut(s)	602
EcoICRI	GAGCTC	1 cut(s)	447
EcoO109I	RGGNCCY	1 cut(s)	83
EcoO65I	GGTNACC	1 cut(s)	602
EcoT14I	CCWWGG	1 cut(s)	86
EcoT38I	GRGCYC	1 cut(s)	449
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	4 cut(s)	137, 287, 388, 614
FaiI	YATR	8 cut(s)	95, 135, 248, 285, 386, 407, 485, 612
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FatI	CATG	4 cut(s)	133, 283, 384, 610
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	236, 469
FokI	GGATG	3 cut(s)	95, 110, 466
FriOI	GRGCYC	1 cut(s)	449
Fsp4HI	GCNGC	2 cut(s)	236, 469
GluI	GCNGC	2 cut(s)	236, 469
GsuI	CTGGAG	1 cut(s)	382
HaeIII	GGCC	1 cut(s)	583
HapII	CCGG	3 cut(s)	205, 329, 474
HgaI	GACGC	1 cut(s)	469
Hin1II	CATG	4 cut(s)	137, 287, 388, 614
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	2 cut(s)	373, 412
HpaII	CCGG	3 cut(s)	205, 329, 474
HphI	GGTGA	2 cut(s)	149, 614
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	3 cut(s)	224, 378, 400
Hpy188III	TCNNGA	2 cut(s)	361, 432
Hpy8I	GTNNAC	1 cut(s)	589
Hpy99I	CGWCG	4 cut(s)	13, 463, 523, 526
HpyAV	CCTTC	2 cut(s)	59, 134
HpyCH4III	ACNGT	2 cut(s)	73, 546
HpyCH4IV	ACGT	4 cut(s)	47, 181, 524, 567
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 474
HpyF3I	CTNAG	3 cut(s)	288, 495, 507
HpySE526I	ACGT	4 cut(s)	47, 181, 524, 567
Hsp92II	CATG	4 cut(s)	137, 287, 388, 614
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	2 cut(s)	270, 574
LmnI	GCTCC	2 cut(s)	207, 476
Lsp1109I	GCAGC	1 cut(s)	480
LweI	GCATC	1 cut(s)	331
MaeII	ACGT	4 cut(s)	47, 181, 524, 567
MaeIII	GTNAC	2 cut(s)	48, 602
MalI	GATC	2 cut(s)	272, 576
MboI	GATC	2 cut(s)	270, 574
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	1 cut(s)	449
MluCI	AATT	2 cut(s)	118, 556
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	4 cut(s)	122, 178, 233, 357
MseI	TTAA	5 cut(s)	117, 129, 528, 597, 619
MslI	CAYNNNNRTG	1 cut(s)	389
MspI	CCGG	3 cut(s)	205, 329, 474
MspR9I	CCNGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	2 cut(s)	208, 474
NciI	CCSGG	1 cut(s)	330
NdeII	GATC	2 cut(s)	270, 574
NlaIII	CATG	4 cut(s)	137, 287, 388, 614
NlaIV	GGNNCC	1 cut(s)	203
NmuCI	GTSAC	2 cut(s)	48, 602
PcsI	WCGNNNNNNNCGW	2 cut(s)	314, 455
PfeI	GAWTC	2 cut(s)	373, 412
PfoI	TCCNGGA	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	237, 470
PpuMI	RGGWCCY	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	449
Psp1406I	AACGTT	1 cut(s)	567
Psp5II	RGGWCCY	1 cut(s)	83
PspEI	GGTNACC	1 cut(s)	602
PspN4I	GGNNCC	1 cut(s)	203
PspPI	GGNCC	2 cut(s)	83, 582
PspPPI	RGGWCCY	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	574
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
RseI	CAYNNNNRTG	1 cut(s)	389
SacI	GAGCTC	1 cut(s)	449
SaqAI	TTAA	5 cut(s)	117, 129, 528, 597, 619
SatI	GCNGC	2 cut(s)	236, 469
Sau3AI	GATC	2 cut(s)	270, 574
Sau96I	GGNCC	2 cut(s)	83, 582
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	1 cut(s)	449
SfaNI	GCATC	1 cut(s)	331
SinI	GGWCC	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	389
Sse9I	AATT	2 cut(s)	118, 556
SsiI	CCGC	1 cut(s)	235
SstI	GAGCTC	1 cut(s)	449
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	2 cut(s)	73, 546
TaiI	ACGT	4 cut(s)	50, 184, 527, 570
TaqI	TCGA	1 cut(s)	308
TasI	AATT	2 cut(s)	118, 556
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	2 cut(s)	373, 412
Tru1I	TTAA	5 cut(s)	117, 129, 528, 597, 619
Tru9I	TTAA	5 cut(s)	117, 129, 528, 597, 619
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	2 cut(s)	48, 602
TseI	GCWGC	1 cut(s)	468
Tsp45I	GTSAC	2 cut(s)	48, 602
TspDTI	ATGAA	5 cut(s)	29, 97, 272, 401, 425
TspGWI	ACGGA	1 cut(s)	353
TspRI	CASTG	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	83
XcmI	CCANNNNNNNNNTGG	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.