AT3G04430

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
N/A
Physical Location & Seq
Reverse (-)
1175506 .. 1176986
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G04430.1

Sequence Viewer

Length: 597 bp
ATGTATAGATGCACATTTAACCCACCTGAAGAAGAACTCATTAACTATTACTTGAATAACAAGATCACAGAGAATGATGATCTAGTGGGGAAGCAAATCGCCGAGGTCAATATATTGCACCATGAACCTGCAGATTTACCTGGGCTGGCGAAGATAGAATCGAGTCATACTTGGTACTTCATATCGCCGGTGGAGAAGTTTGGGAAGCTCAACCGAACGAAGAGGGTGTCGAGGTCAGGGCACTGGAAGATAACCGGAAATAGTCGTACCATTAAGGACGTTGATGGTAACCCTATCGGTTTAAAGAAATTTCTTGTTTTCCAAGAAAACAAAAGATCTTCTTCTTCCTCGTTATCCACCACTACCACCCAACAACAGAAGACCAATTGGATTATCCATGAATTTCATTCCTTTCTCCCCCATCCCAACAAGATGCTGACGGAGAACAAGAACGAAGATTATGGCGGAGATTATTGTAATGGCTTAGACGAGCTTCTCCAATCACTGGAACAAGGTGAATCCAGCGGCCTCCTTTTCGGAGAAAATGGACACGCGTGTGAACAAGATACCGCAGAAAACTCCAATGTGACTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

198

Amino Acids

22.51

Weight (kDa)

5.61

Isoelectric Point (pI)

58.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 4 - 136 3.4e-29 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 136
AccB7I CCANNNNNTGG 1 cut(s) 505
AccII CGCG 1 cut(s) 554
AciI CCGC 3 cut(s) 465, 525, 570
AcsI RAATTY 2 cut(s) 308, 401
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 2 cut(s) 176, 268
AfiI CCNNNNNNNGG 1 cut(s) 505
AflIII ACRYGT 1 cut(s) 552
AgsI TTSAA 1 cut(s) 55
AjnI CCWGG 1 cut(s) 139
AleI CACNNNNGTG 1 cut(s) 555
AluBI AGCT 2 cut(s) 208, 493
AluI AGCT 2 cut(s) 208, 493
AoxI GGCC 1 cut(s) 526
ApoI RAATTY 2 cut(s) 308, 401
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
AsuHPI GGTGA 1 cut(s) 527
BaeGI GKGCMC 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 386
BccI CCATC 2 cut(s) 278, 429
BciT130I CCWGG 1 cut(s) 141
BfaI CTAG 1 cut(s) 83
BfmI CTRYAG 1 cut(s) 129
BfuAI ACCTGC 1 cut(s) 136
BglII AGATCT 1 cut(s) 335
BisI GCNGC 1 cut(s) 526
BlsI GCNGC 1 cut(s) 527
Bme1390I CCNGG 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 141
BmsI GCATC 1 cut(s) 423
BpiI GAAGAC 1 cut(s) 386
BsaJI CCNNGG 2 cut(s) 102, 140
BsaWI WCCGGW 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 505
Bse118I RCCGGY 1 cut(s) 187
Bse1I ACTGG 2 cut(s) 248, 510
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 2 cut(s) 102, 140
BseGI GGATG 1 cut(s) 421
BseLI CCNNNNNNNGG 1 cut(s) 505
BseNI ACTGG 2 cut(s) 248, 510
BseSI GKGCMC 1 cut(s) 243
Bsh1236I CGCG 1 cut(s) 554
BshFI GGCC 1 cut(s) 528
BsiSI CCGG 2 cut(s) 188, 255
BslI CCNNNNNNNGG 1 cut(s) 505
BsnI GGCC 1 cut(s) 528
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 3 cut(s) 63, 79, 335
BspACI CCGC 3 cut(s) 465, 525, 570
BspANI GGCC 1 cut(s) 528
BspFNI CGCG 1 cut(s) 554
BspMAI CTGCAG 1 cut(s) 133
BspMI ACCTGC 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 187
BsrI ACTGG 2 cut(s) 248, 510
BssAI RCCGGY 1 cut(s) 187
BssECI CCNNGG 2 cut(s) 102, 140
BssMI GATC 3 cut(s) 63, 79, 335
Bst2UI CCWGG 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 484
BstEII GGTNACC 1 cut(s) 287
BstF5I GGATG 1 cut(s) 421
BstFNI CGCG 1 cut(s) 554
BstKTI GATC 3 cut(s) 66, 82, 338
BstMBI GATC 3 cut(s) 63, 79, 335
BstNI CCWGG 1 cut(s) 141
BstPI GGTNACC 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 139
BstSFI CTRYAG 1 cut(s) 129
BstSLI GKGCMC 1 cut(s) 243
BstUI CGCG 1 cut(s) 554
BstV2I GAAGAC 1 cut(s) 386
BstX2I RGATCY 1 cut(s) 335
BstYI RGATCY 1 cut(s) 335
BsuRI GGCC 1 cut(s) 528
BtsCI GGATG 1 cut(s) 421
BtsIMutI CAGTG 2 cut(s) 241, 503
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 147
Cfr10I RCCGGY 1 cut(s) 187
Csp6I GTAC 2 cut(s) 175, 267
CviAII CATG 2 cut(s) 122, 398
CviJI RGCY 5 cut(s) 145, 208, 483, 493, 528
CviKI_1 RGCY 5 cut(s) 145, 208, 483, 493, 528
CviQI GTAC 2 cut(s) 175, 267
DdeI CTNAG 1 cut(s) 484
DpnI GATC 3 cut(s) 65, 81, 337
DpnII GATC 3 cut(s) 63, 79, 335
DraI TTTAAA 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
EciI GGCGGA 1 cut(s) 480
Eco57I CTGAAG 1 cut(s) 48
Eco91I GGTNACC 1 cut(s) 287
EcoO65I GGTNACC 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 139
FaeI CATG 2 cut(s) 125, 401
FaiI YATR 8 cut(s) 6, 113, 123, 168, 182, 399, 462, 593
FalI AAGNNNNNCTT 2 cut(s) 325, 357
FatI CATG 2 cut(s) 121, 397
Fnu4HI GCNGC 1 cut(s) 526
FokI GGATG 1 cut(s) 408
Fsp4HI GCNGC 1 cut(s) 526
FspBI CTAG 1 cut(s) 83
GluI GCNGC 1 cut(s) 526
HaeIII GGCC 1 cut(s) 528
HapII CCGG 2 cut(s) 188, 255
Hin1II CATG 2 cut(s) 125, 401
HinfI GANTC 3 cut(s) 158, 163, 518
HpaII CCGG 2 cut(s) 188, 255
HphI GGTGA 1 cut(s) 527
Hpy166II GTNNAC 1 cut(s) 560
Hpy188I TCNGA 1 cut(s) 539
Hpy8I GTNNAC 1 cut(s) 560
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 3 cut(s) 12, 118, 131
HpyF3I CTNAG 1 cut(s) 484
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 2 cut(s) 125, 401
Kzo9I GATC 3 cut(s) 63, 79, 335
LweI GCATC 1 cut(s) 423
MaeI CTAG 1 cut(s) 83
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 2 cut(s) 287, 586
MalI GATC 3 cut(s) 65, 81, 337
MboI GATC 3 cut(s) 63, 79, 335
MfeI CAATTG 1 cut(s) 385
MflI RGATCY 1 cut(s) 335
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 3 cut(s) 308, 385, 401
MluI ACGCGT 1 cut(s) 552
MlyI GAGTC 1 cut(s) 172
MnlI CCTC 5 cut(s) 97, 216, 225, 358, 539
MseI TTAA 4 cut(s) 18, 42, 273, 302
MslI CAYNNNNRTG 1 cut(s) 555
MspA1I CMGCKG 1 cut(s) 525
MspI CCGG 2 cut(s) 188, 255
MspR9I CCNGG 1 cut(s) 141
MunI CAATTG 1 cut(s) 385
MvaI CCWGG 1 cut(s) 141
MvnI CGCG 1 cut(s) 554
NdeII GATC 3 cut(s) 63, 79, 335
NlaIII CATG 2 cut(s) 125, 401
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 586
OliI CACNNNNGTG 1 cut(s) 555
PfeI GAWTC 2 cut(s) 158, 518
PflMI CCANNNNNTGG 1 cut(s) 505
PkrI GCNGC 1 cut(s) 527
PleI GAGTC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 139
PspEI GGTNACC 1 cut(s) 287
PspGI CCWGG 1 cut(s) 139
PstI CTGCAG 1 cut(s) 133
PsuI RGATCY 1 cut(s) 335
RsaI GTAC 2 cut(s) 176, 268
RsaNI GTAC 2 cut(s) 175, 267
RseI CAYNNNNRTG 1 cut(s) 555
SaqAI TTAA 4 cut(s) 18, 42, 273, 302
SatI GCNGC 1 cut(s) 526
Sau3AI GATC 3 cut(s) 63, 79, 335
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 141
SduI GDGCHC 1 cut(s) 243
SetI ASST 9 cut(s) 28, 108, 130, 142, 210, 236, 282, 495, 517
SfaNI GCATC 1 cut(s) 423
SfcI CTRYAG 1 cut(s) 129
SgrAI CRCCGGYG 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 555
Sse9I AATT 3 cut(s) 308, 385, 401
SsiI CCGC 3 cut(s) 465, 525, 570
SspMI CTAG 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 139
TaiI ACGT 1 cut(s) 282
TaqI TCGA 2 cut(s) 161, 230
TasI AATT 3 cut(s) 308, 385, 401
TauI GCSGC 1 cut(s) 528
TfiI GAWTC 2 cut(s) 158, 518
Tru1I TTAA 4 cut(s) 18, 42, 273, 302
Tru9I TTAA 4 cut(s) 18, 42, 273, 302
TscAI CASTG 2 cut(s) 248, 510
TseFI GTSAC 1 cut(s) 586
Tsp45I GTSAC 1 cut(s) 586
TspDTI ATGAA 4 cut(s) 138, 169, 395, 414
TspGWI ACGGA 1 cut(s) 455
TspRI CASTG 2 cut(s) 248, 510
Van91I CCANNNNNTGG 1 cut(s) 505
XapI RAATTY 2 cut(s) 308, 401
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.