AT3G10590
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
N/A
Physical Location & Seq
Reverse (-)
3310208 .. 3311327
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10590.1

Sequence Viewer

Length: 621 bp
ATGGCTTCGAGTCCACGCTGGACGGAGGACGACAACAGGCGTTTTAAGTCAGCTCTGTCGCAATTCCCTCCGGATAACAAGCGTTTGGTGAATGTCGCCCAGCATCTGCCGAAACCTTTGGAGGAGGTGAAGTACTACTACGAAAAGTTGGTCAACGATGTTTATCTGCCGAAACCTTTAGAGAATGTCACCCAGCATCTGCAGAAACCTATGGAAATGGAGGAGATGAAGTACATGTACGAAAAGATGGCCAACGATGTTAATCAGATGCCCGAGTACGTACCACTGGCGGAATCGAGTCAGTCCAAACGCAGGAAGAAGGATACGCCAAATCCTTGGACAGAAGAGGAACACAGATTGTTTCTGCAAGGATTGAAAAAGTATGGGGAAGGAGCTTCGACGTTGACATCAACGAATTTTGTGAAGACAAAGACTCCACGGCAAGTGTCAAGCCATGCACAGTATTACAAAAGGCAAAAATCGGACAATAAGAAGGAGAAACGCCGGAGTATTTTTGACATAACTTTGGAGTCTACCGAGGGCAATCCAGATTCTGGAAATCAGAACCCTCCGGATGATGATGATCCGTCCCAAGGTCAAGGCACTTGTCTTGGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

206

Amino Acids

23.93

Weight (kDa)

7.75

Isoelectric Point (pI)

62.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 554
AccI GTMKAC 1 cut(s) 533
AccIII TCCGGA 2 cut(s) 70, 571
AciI CCGC 1 cut(s) 290
AclWI GGATC 1 cut(s) 578
AcoI YGGCCR 1 cut(s) 249
AcsI RAATTY 1 cut(s) 415
AfaI GTAC 5 cut(s) 134, 233, 239, 278, 282
AfiI CCNNNNNNNGG 3 cut(s) 312, 554, 593
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 1 cut(s) 376
AluBI AGCT 2 cut(s) 53, 395
AluI AGCT 2 cut(s) 53, 395
AlwI GGATC 1 cut(s) 578
AlwNI CAGNNNCTG 3 cut(s) 106, 199, 554
Ama87I CYCGRG 1 cut(s) 272
Aor13HI TCCGGA 2 cut(s) 70, 571
AoxI GGCC 1 cut(s) 249
ApoI RAATTY 1 cut(s) 415
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
AsuHPI GGTGA 3 cut(s) 100, 139, 181
AvaI CYCGRG 1 cut(s) 272
BalI TGGCCA 1 cut(s) 251
BarI GAAGNNNNNNTAC 4 cut(s) 122, 154, 221, 253
BbsI GAAGAC 1 cut(s) 431
BccI CCATC 1 cut(s) 241
BceAI ACGGC 1 cut(s) 455
BciVI GTATCC 1 cut(s) 316
BfmI CTRYAG 1 cut(s) 200
BfuI GTATCC 1 cut(s) 316
BmcAI AGTACT 1 cut(s) 134
BmeT110I CYCGRG 1 cut(s) 272
BmsI GCATC 3 cut(s) 112, 205, 258
BpiI GAAGAC 1 cut(s) 431
BsaAI YACGTR 1 cut(s) 280
BsaBI GATNNNNATC 3 cut(s) 162, 261, 582
BsaJI CCNNGG 4 cut(s) 335, 437, 537, 592
BsaWI WCCGGW 2 cut(s) 70, 571
BsaXI ACNNNNNCTCC 6 cut(s) 116, 146, 215, 245, 418, 448
Bsc4I CCNNNNNNNGG 3 cut(s) 312, 554, 593
Bse1I ACTGG 1 cut(s) 291
Bse8I GATNNNNATC 3 cut(s) 162, 261, 582
BseAI TCCGGA 2 cut(s) 70, 571
BseDI CCNNGG 4 cut(s) 335, 437, 537, 592
BseGI GGATG 1 cut(s) 580
BseJI GATNNNNATC 3 cut(s) 162, 261, 582
BseLI CCNNNNNNNGG 3 cut(s) 312, 554, 593
BseNI ACTGG 1 cut(s) 291
BseRI GAGGAG 2 cut(s) 137, 236
BseYI CCCAGC 2 cut(s) 99, 192
BshFI GGCC 1 cut(s) 251
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 3 cut(s) 71, 505, 572
BslFI GGGAC 1 cut(s) 574
BslI CCNNNNNNNGG 3 cut(s) 312, 554, 593
BsmFI GGGAC 1 cut(s) 574
BsnI GGCC 1 cut(s) 251
BsoBI CYCGRG 1 cut(s) 272
Bsp13I TCCGGA 2 cut(s) 70, 571
Bsp143I GATC 1 cut(s) 583
BspACI CCGC 1 cut(s) 290
BspANI GGCC 1 cut(s) 251
BspEI TCCGGA 2 cut(s) 70, 571
BspMAI CTGCAG 1 cut(s) 204
BspPI GGATC 1 cut(s) 578
BsrI ACTGG 1 cut(s) 291
BssECI CCNNGG 4 cut(s) 335, 437, 537, 592
BssMI GATC 1 cut(s) 583
BssT1I CCWWGG 2 cut(s) 335, 592
Bst4CI ACNGT 1 cut(s) 462
Bst6I CTCTTC 1 cut(s) 339
BstBAI YACGTR 1 cut(s) 280
BstDSI CCRYGG 1 cut(s) 437
BstF5I GGATG 1 cut(s) 580
BstKTI GATC 1 cut(s) 586
BstMBI GATC 1 cut(s) 583
BstNSI RCATGY 1 cut(s) 238
BstSFI CTRYAG 1 cut(s) 200
BstSNI TACGTA 1 cut(s) 280
BstV2I GAAGAC 1 cut(s) 431
BstXI CCANNNNNNTGG 1 cut(s) 336
BsuI GTATCC 1 cut(s) 316
BsuRI GGCC 1 cut(s) 251
BtgI CCRYGG 1 cut(s) 437
BtsCI GGATG 1 cut(s) 580
BtsIMutI CAGTG 1 cut(s) 284
CaiI CAGNNNCTG 3 cut(s) 106, 199, 554
Csp6I GTAC 5 cut(s) 133, 232, 238, 277, 281
CviAII CATG 2 cut(s) 235, 455
CviJI RGCY 5 cut(s) 5, 53, 251, 395, 453
CviKI_1 RGCY 5 cut(s) 5, 53, 251, 395, 453
CviQI GTAC 5 cut(s) 133, 232, 238, 277, 281
DpnI GATC 1 cut(s) 585
DpnII GATC 1 cut(s) 583
EaeI YGGCCR 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
EciI GGCGGA 1 cut(s) 305
Eco105I TACGTA 1 cut(s) 280
Eco130I CCWWGG 2 cut(s) 335, 592
Eco88I CYCGRG 1 cut(s) 272
EcoT14I CCWWGG 2 cut(s) 335, 592
ErhI CCWWGG 2 cut(s) 335, 592
FaeI CATG 2 cut(s) 238, 458
FaiI YATR 5 cut(s) 212, 236, 384, 456, 521
FaqI GGGAC 1 cut(s) 574
FatI CATG 2 cut(s) 234, 454
FblI GTMKAC 1 cut(s) 533
FokI GGATG 1 cut(s) 587
GsaI CCCAGC 2 cut(s) 103, 196
HaeIII GGCC 1 cut(s) 251
HapII CCGG 3 cut(s) 71, 505, 572
Hin1II CATG 2 cut(s) 238, 458
HincII GTYRAC 2 cut(s) 154, 405
HindII GTYRAC 2 cut(s) 154, 405
HinfI GANTC 6 cut(s) 10, 293, 298, 433, 530, 551
HpaII CCGG 3 cut(s) 71, 505, 572
HphI GGTGA 3 cut(s) 100, 139, 181
Hpy166II GTNNAC 4 cut(s) 14, 154, 405, 534
Hpy188I TCNGA 3 cut(s) 267, 484, 564
Hpy188III TCNNGA 4 cut(s) 71, 548, 555, 572
Hpy8I GTNNAC 4 cut(s) 14, 154, 405, 534
Hpy99I CGWCG 1 cut(s) 403
HpyAV CCTTC 3 cut(s) 313, 383, 487
HpyCH4III ACNGT 1 cut(s) 462
HpyCH4IV ACGT 2 cut(s) 279, 401
HpyCH4V TGCA 3 cut(s) 202, 367, 458
HpySE526I ACGT 2 cut(s) 279, 401
Hsp92II CATG 2 cut(s) 238, 458
Kpn2I TCCGGA 2 cut(s) 70, 571
Kzo9I GATC 1 cut(s) 583
LmnI GCTCC 1 cut(s) 392
LweI GCATC 3 cut(s) 112, 205, 258
MaeII ACGT 2 cut(s) 279, 401
MaeIII GTNAC 1 cut(s) 187
MalI GATC 1 cut(s) 585
MboI GATC 1 cut(s) 583
MboII GAAGA 3 cut(s) 328, 356, 436
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 2 cut(s) 62, 415
MluNI TGGCCA 1 cut(s) 251
MlyI GAGTC 4 cut(s) 19, 307, 427, 539
MnlI CCTC 8 cut(s) 19, 78, 115, 118, 214, 340, 532, 579
Mox20I TGGCCA 1 cut(s) 251
MroI TCCGGA 2 cut(s) 70, 571
MscI TGGCCA 1 cut(s) 251
MseI TTAA 2 cut(s) 45, 261
Msp20I TGGCCA 1 cut(s) 251
MspI CCGG 3 cut(s) 71, 505, 572
NdeII GATC 1 cut(s) 583
NlaIII CATG 2 cut(s) 238, 458
NmuCI GTSAC 1 cut(s) 187
NspI RCATGY 1 cut(s) 238
PciI ACATGT 1 cut(s) 234
PfeI GAWTC 2 cut(s) 293, 551
PflMI CCANNNNNTGG 1 cut(s) 554
PleI GAGTC 4 cut(s) 18, 306, 427, 538
PpsI GAGTC 4 cut(s) 18, 306, 427, 538
Ppu21I YACGTR 1 cut(s) 280
PscI ACATGT 1 cut(s) 234
PspFI CCCAGC 2 cut(s) 99, 192
PstI CTGCAG 1 cut(s) 204
PstNI CAGNNNCTG 3 cut(s) 106, 199, 554
RsaI GTAC 5 cut(s) 134, 233, 239, 278, 282
RsaNI GTAC 5 cut(s) 133, 232, 238, 277, 281
SaqAI TTAA 2 cut(s) 45, 261
Sau3AI GATC 1 cut(s) 583
ScaI AGTACT 1 cut(s) 134
SchI GAGTC 4 cut(s) 19, 307, 427, 539
SetI ASST 9 cut(s) 55, 118, 129, 178, 211, 282, 397, 404, 598
SfaNI GCATC 3 cut(s) 112, 205, 258
SfcI CTRYAG 1 cut(s) 200
SnaBI TACGTA 1 cut(s) 280
Sse9I AATT 2 cut(s) 62, 415
SsiI CCGC 1 cut(s) 290
StyI CCWWGG 2 cut(s) 335, 592
TaaI ACNGT 1 cut(s) 462
TaiI ACGT 2 cut(s) 282, 404
TaqI TCGA 3 cut(s) 8, 296, 398
TasI AATT 2 cut(s) 62, 415
TatI WGTACW 2 cut(s) 132, 231
TfiI GAWTC 2 cut(s) 293, 551
Tru1I TTAA 2 cut(s) 45, 261
Tru9I TTAA 2 cut(s) 45, 261
TscAI CASTG 1 cut(s) 291
TseFI GTSAC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 242
TspGWI ACGGA 2 cut(s) 38, 576
TspRI CASTG 1 cut(s) 291
Van91I CCANNNNNTGG 1 cut(s) 554
XapI RAATTY 1 cut(s) 415
XceI RCATGY 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 533
ZrmI AGTACT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.