AT3G10595
MYB Family

ubiquitin modification-dependent histone binding

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
N/A
Physical Location & Seq
Reverse (-)
3311785 .. 3312831
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10595.1

Sequence Viewer

Length: 552 bp
ATGGCTGAAAATTCATGGACGACAGAGGAGAACGAGATGTTCAAGGATGCACTGGTGATGTTCACTGCCTTTTTGCTTACTCGGTTTGAGAGTGTCGCCGAGTATGTGGATAGATCGGTGGATGATGTTAAGGAGCATTACAAGGAATTGGTCAATGATCTTTTAGAGATGGGATCCAGTCGAGTAGCTTTTCCTAATGAATTGACTAAGGATATGGCTCAAAGTTCGTACCAGGCCGAGAGAACTATATGGACCAAAGAAACACATGAATGGTTTCTGATTGGGTTAGACCGATTTGGGAAAGATTGGCGTAAAATAGCCGTCTTATTGGATTGCAAGAGCCCGATCCAAGTCGAGATATATGCAGAAAACTTTTACCAGTGGCAAAGCTCAAAGAAAAATGTGATTAACGACTTAAATGTGGCAAGCACCGATGTGAATGTGATGAAACGGCAGGGAGCAAATAACACCAATGTGGACTCAACAGGCCAACAAGAGAGTCTCGTCGCTCTGGAAATCGGTCACCATGCTAAGGCCCCCAACTCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

183

Amino Acids

21.05

Weight (kDa)

4.96

Isoelectric Point (pI)

34.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 168, 181, 340
AcsI RAATTY 1 cut(s) 10
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 1 cut(s) 532
AgsI TTSAA 1 cut(s) 43
AjnI CCWGG 1 cut(s) 231
AleI CACNNNNGTG 2 cut(s) 434, 473
AluBI AGCT 2 cut(s) 188, 390
AluI AGCT 2 cut(s) 188, 390
Alw26I GTCTC 1 cut(s) 506
AlwI GGATC 3 cut(s) 168, 181, 340
AoxI GGCC 3 cut(s) 234, 487, 534
ApoI RAATTY 1 cut(s) 10
Asp700I GAANNNNTTC 1 cut(s) 273
AspS9I GGNCC 2 cut(s) 252, 535
AsuHPI GGTGA 2 cut(s) 67, 515
AvaII GGWCC 1 cut(s) 252
BamHI GGATCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 344
BccI CCATC 1 cut(s) 163
BceAI ACGGC 2 cut(s) 305, 467
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 506
Bme1390I CCNGG 1 cut(s) 233
Bme18I GGWCC 1 cut(s) 252
BmgT120I GGNCC 2 cut(s) 252, 535
BmiI GGNNCC 2 cut(s) 175, 537
BmrFI CCNGG 1 cut(s) 233
BmsI GCATC 1 cut(s) 37
Bpu10I CCTNAGC 1 cut(s) 531
Bsc4I CCNNNNNNNGG 1 cut(s) 532
Bse1I ACTGG 3 cut(s) 57, 177, 379
BseBI CCWGG 1 cut(s) 233
BseGI GGATG 2 cut(s) 52, 127
BseLI CCNNNNNNNGG 1 cut(s) 532
BseNI ACTGG 3 cut(s) 57, 177, 379
BseRI GAGGAG 1 cut(s) 41
BshFI GGCC 3 cut(s) 236, 489, 536
BslI CCNNNNNNNGG 1 cut(s) 532
BsmAI GTCTC 1 cut(s) 506
BsnI GGCC 3 cut(s) 236, 489, 536
Bsp1286I GDGCHC 1 cut(s) 344
Bsp143I GATC 4 cut(s) 113, 157, 173, 345
BspANI GGCC 3 cut(s) 236, 489, 536
BspLI GGNNCC 2 cut(s) 175, 537
BspPI GGATC 3 cut(s) 168, 181, 340
BsrI ACTGG 3 cut(s) 57, 177, 379
BssMI GATC 4 cut(s) 113, 157, 173, 345
Bst2UI CCWGG 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 427
BstDEI CTNAG 2 cut(s) 207, 531
BstEII GGTNACC 1 cut(s) 521
BstF5I GGATG 2 cut(s) 52, 127
BstKTI GATC 4 cut(s) 116, 160, 176, 348
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 4 cut(s) 113, 157, 173, 345
BstNI CCWGG 1 cut(s) 233
BstPI GGTNACC 1 cut(s) 521
BstSCI CCNGG 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BsuRI GGCC 3 cut(s) 236, 489, 536
BtsCI GGATG 2 cut(s) 52, 127
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 3 cut(s) 50, 63, 386
Cac8I GCNNGC 1 cut(s) 427
Cfr13I GGNCC 2 cut(s) 252, 535
Csp6I GTAC 1 cut(s) 229
CviAII CATG 3 cut(s) 15, 266, 527
CviJI RGCY 9 cut(s) 5, 188, 218, 236, 320, 342, 390, 489, 536
CviKI_1 RGCY 9 cut(s) 5, 188, 218, 236, 320, 342, 390, 489, 536
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 2 cut(s) 207, 531
DpnI GATC 4 cut(s) 115, 159, 175, 347
DpnII GATC 4 cut(s) 113, 157, 173, 345
Eco24I GRGCYC 1 cut(s) 344
Eco47I GGWCC 1 cut(s) 252
Eco91I GGTNACC 1 cut(s) 521
EcoO109I RGGNCCY 1 cut(s) 535
EcoO65I GGTNACC 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 231
EcoT38I GRGCYC 1 cut(s) 344
FaeI CATG 3 cut(s) 18, 269, 530
FaiI YATR 9 cut(s) 16, 105, 215, 248, 250, 267, 361, 363, 528
FatI CATG 3 cut(s) 14, 265, 526
FokI GGATG 2 cut(s) 59, 134
FriOI GRGCYC 1 cut(s) 344
HaeIII GGCC 3 cut(s) 236, 489, 536
Hin1II CATG 3 cut(s) 18, 269, 530
HinfI GANTC 2 cut(s) 479, 499
HphI GGTGA 2 cut(s) 67, 515
Hpy166II GTNNAC 2 cut(s) 63, 478
Hpy188I TCNGA 1 cut(s) 279
Hpy188III TCNNGA 2 cut(s) 355, 512
Hpy8I GTNNAC 2 cut(s) 63, 478
Hpy99I CGWCG 1 cut(s) 509
HpyCH4V TGCA 3 cut(s) 50, 336, 365
HpyF3I CTNAG 2 cut(s) 207, 531
Hsp92II CATG 3 cut(s) 18, 269, 530
Kzo9I GATC 4 cut(s) 113, 157, 173, 345
LmnI GCTCC 2 cut(s) 133, 458
LpnPI CCDG 8 cut(s) 38, 190, 218, 245, 392, 440, 471, 497
LweI GCATC 1 cut(s) 37
MaeIII GTNAC 1 cut(s) 521
MalI GATC 4 cut(s) 115, 159, 175, 347
MboI GATC 4 cut(s) 113, 157, 173, 345
MflI RGATCY 1 cut(s) 173
MhlI GDGCHC 1 cut(s) 344
MluCI AATT 3 cut(s) 10, 146, 200
MlyI GAGTC 2 cut(s) 473, 508
MnlI CCTC 1 cut(s) 19
MroXI GAANNNNTTC 1 cut(s) 273
MseI TTAA 3 cut(s) 129, 408, 416
MslI CAYNNNNRTG 3 cut(s) 268, 434, 473
MspR9I CCNGG 1 cut(s) 233
MvaI CCWGG 1 cut(s) 233
NdeII GATC 4 cut(s) 113, 157, 173, 345
NlaIII CATG 3 cut(s) 18, 269, 530
NlaIV GGNNCC 2 cut(s) 175, 537
NmeAIII GCCGAG 2 cut(s) 124, 262
NmuCI GTSAC 1 cut(s) 521
OliI CACNNNNGTG 2 cut(s) 434, 473
PdmI GAANNNNTTC 1 cut(s) 273
PleI GAGTC 2 cut(s) 473, 507
PpsI GAGTC 2 cut(s) 473, 507
Psp6I CCWGG 1 cut(s) 231
PspEI GGTNACC 1 cut(s) 521
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 2 cut(s) 175, 537
PspPI GGNCC 2 cut(s) 252, 535
PsuI RGATCY 1 cut(s) 173
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
RseI CAYNNNNRTG 3 cut(s) 268, 434, 473
SaqAI TTAA 3 cut(s) 129, 408, 416
Sau3AI GATC 4 cut(s) 113, 157, 173, 345
Sau96I GGNCC 2 cut(s) 252, 535
SchI GAGTC 2 cut(s) 473, 508
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 1 cut(s) 344
SetI ASST 2 cut(s) 190, 392
SfaNI GCATC 1 cut(s) 37
SinI GGWCC 1 cut(s) 252
SmiMI CAYNNNNRTG 3 cut(s) 268, 434, 473
Sse9I AATT 3 cut(s) 10, 146, 200
StyD4I CCNGG 1 cut(s) 231
TaqI TCGA 2 cut(s) 181, 354
TaqII GACCGA 2 cut(s) 306, 509
TasI AATT 3 cut(s) 10, 146, 200
Tru1I TTAA 3 cut(s) 129, 408, 416
Tru9I TTAA 3 cut(s) 129, 408, 416
TscAI CASTG 3 cut(s) 57, 70, 386
TseFI GTSAC 1 cut(s) 521
Tsp45I GTSAC 1 cut(s) 521
TspDTI ATGAA 3 cut(s) 213, 282, 461
TspRI CASTG 3 cut(s) 57, 70, 386
VpaK11BI GGWCC 1 cut(s) 252
XapI RAATTY 1 cut(s) 10
XmnI GAANNNNTTC 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.