Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3455355 .. 3457342

Gene Structure 1988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G11020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCTGTATATGAACAAACCGGAACCGAGCAGCCGAAGAAAAGGAAATCTAGGGCTCGAGCAGGTGGTTTAACGGTGGCTGATAGGCTAAAGAAGTGGAAAGAGTACAACGAGATTGTTGAAGCTTCGGCTGTTAAAGAAGGAGAGAAACCGAAACGCAAAGTTCCTGCGAAAGGGTCGAAGAAAGGTTGTATGAAGGGTAAAGGAGGACCAGATAATTCTCACTGTAGTTTTAGAGGAGTTAGACAAAGGATTTGGGGTAAATGGGTTGCAGAGATTCGAGAACCGAAAATAGGAACTAGACTTTGGCTTGGTACTTTTCCTACCGCGGAAAAAGCTGCTTCCGCTTATGATGAAGCGGCTACCGCTATGTACGGTTCATTGGCTCGTCTTAACTTCCCTCAGTCTGTTGGGTCTGAGTTTACTAGTACGTCTAGTCAATCTGAGGTGTGTACGGTTGAAAATAAGGCGGTTGTTTGTGGTGATGTTTGTGTGAAGCATGAAGATACTGATTGTGAATCTAATCCATTTAGTCAGATTTTAGATGTTAGAGAAGAGTCTTGTGGAACCAGGCCGGACAGTTGCACGGTTGGACATCAAGATATGAATTCTTCGCTGAATTACGATTTGCTGTTAGAGTTTGAGCAGCAGTATTGGGGCCAAGTTTTGCAGGAGAAAGAGAAACCGAAGCAGGAAGAAGAGGAGATACAGCAACAGCAACAGGAACAGCAACAGCAACAGCTGCAACCGGATTTGCTTACTGTTGCAGATTACGGTTGGCCTTGGTCTAATGATATTGTAAATGATCAGACTTCTTGGGATCCTAATGAGTGCTTTGATATTAATGAACTCCTTGGAGATTTGAATGAACCTGGTCCCCATCAGAGCCAAGACCAAAACCACGTAAATTCTGGTAGTTATGATTTGCATCCGCTTCATCTCGAGCCACACGATGGTCACGAGTTCAATGGTTTGAGTTCTCTGGATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009414 GO:0009415 GO:0009416 GO:0009555 GO:0009628 GO:0009636 GO:0009889 GO:0009891 GO:0009893 GO:0010035 GO:0010224 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

330

Amino Acids

37.12

Weight (kDa)

5.02

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	77 - 126	4e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	53
Acc36I	ACCTGC	1 cut(s)	53
AccB7I	CCANNNNNTGG	1 cut(s)	953
AccII	CGCG	1 cut(s)	329
AciI	CCGC	7 cut(s)	327, 329, 345, 359, 366, 470, 932
AclWI	GGATC	2 cut(s)	815, 828
AcsI	RAATTY	2 cut(s)	607, 907
AfaI	GTAC	5 cut(s)	107, 316, 374, 430, 454
AfiI	CCNNNNNNNGG	3 cut(s)	173, 293, 953
AgsI	TTSAA	4 cut(s)	122, 461, 865, 967
AhlI	ACTAGT	1 cut(s)	425
AjnI	CCWGG	2 cut(s)	569, 871
AjuI	GAANNNNNNNTTGG	2 cut(s)	289, 321
AluBI	AGCT	3 cut(s)	125, 338, 742
AluI	AGCT	3 cut(s)	125, 338, 742
AlwI	GGATC	2 cut(s)	815, 828
Ama87I	CYCGRG	2 cut(s)	57, 941
AoxI	GGCC	3 cut(s)	572, 658, 779
ApeKI	GCWGC	4 cut(s)	31, 338, 646, 742
ApoI	RAATTY	2 cut(s)	607, 907
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
AseI	ATTAAT	1 cut(s)	843
AspS9I	GGNCC	3 cut(s)	209, 658, 875
AsuHPI	GGTGA	1 cut(s)	494
AvaI	CYCGRG	2 cut(s)	57, 941
AvaII	GGWCC	2 cut(s)	209, 875
BamHI	GGATCC	1 cut(s)	820
BanII	GRGCYC	1 cut(s)	58
BarI	GAAGNNNNNNTAC	2 cut(s)	690, 722
BauI	CACGAG	1 cut(s)	959
BbvI	GCAGC	4 cut(s)	43, 325, 658, 729
BccI	CCATC	2 cut(s)	888, 947
BciT130I	CCWGG	2 cut(s)	571, 873
BclI	TGATCA	1 cut(s)	805
BcuI	ACTAGT	1 cut(s)	425
BfaI	CTAG	4 cut(s)	51, 300, 426, 435
BfmI	CTRYAG	1 cut(s)	226
BfuAI	ACCTGC	1 cut(s)	53
BisI	GCNGC	5 cut(s)	32, 339, 360, 647, 743
BlsI	GCNGC	5 cut(s)	33, 340, 361, 648, 744
Bme1390I	CCNGG	2 cut(s)	571, 873
Bme18I	GGWCC	2 cut(s)	209, 875
BmeT110I	CYCGRG	2 cut(s)	57, 941
BmgT120I	GGNCC	3 cut(s)	209, 658, 875
BmiI	GGNNCC	5 cut(s)	25, 568, 659, 822, 877
BmrFI	CCNGG	2 cut(s)	571, 873
BmsI	GCATC	1 cut(s)	937
BsaAI	YACGTR	1 cut(s)	904
BsaBI	GATNNNNATC	1 cut(s)	927
BsaJI	CCNNGG	3 cut(s)	327, 782, 853
BsaWI	WCCGGW	2 cut(s)	20, 748
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 293, 953
Bse8I	GATNNNNATC	1 cut(s)	927
BseBI	CCWGG	2 cut(s)	571, 873
BseDI	CCNNGG	3 cut(s)	327, 782, 853
BseGI	GGATG	1 cut(s)	928
BseJI	GATNNNNATC	1 cut(s)	927
BseLI	CCNNNNNNNGG	3 cut(s)	173, 293, 953
BseMII	CTCAG	3 cut(s)	408, 416, 435
BseRI	GAGGAG	2 cut(s)	252, 716
BseXI	GCAGC	4 cut(s)	43, 325, 658, 729
Bsh1236I	CGCG	1 cut(s)	329
BshFI	GGCC	3 cut(s)	574, 660, 781
BsiHKCI	CYCGRG	2 cut(s)	57, 941
BsiSI	CCGG	3 cut(s)	21, 575, 749
BslFI	GGGAC	1 cut(s)	861
BslI	CCNNNNNNNGG	3 cut(s)	173, 293, 953
BsmFI	GGGAC	1 cut(s)	861
BsnI	GGCC	3 cut(s)	574, 660, 781
BsoBI	CYCGRG	2 cut(s)	57, 941
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	2 cut(s)	805, 820
BspACI	CCGC	7 cut(s)	327, 329, 345, 359, 366, 470, 932
BspANI	GGCC	3 cut(s)	574, 660, 781
BspCNI	CTCAG	3 cut(s)	409, 415, 436
BspFNI	CGCG	1 cut(s)	329
BspLI	GGNNCC	5 cut(s)	25, 568, 659, 822, 877
BspMI	ACCTGC	1 cut(s)	53
BspPI	GGATC	2 cut(s)	815, 828
BssECI	CCNNGG	3 cut(s)	327, 782, 853
BssMI	GATC	2 cut(s)	805, 820
BssSI	CACGAG	1 cut(s)	959
BssT1I	CCWWGG	2 cut(s)	782, 853
Bst2BI	CACGAG	1 cut(s)	959
Bst2UI	CCWGG	2 cut(s)	571, 873
Bst4CI	ACNGT	8 cut(s)	76, 227, 377, 457, 581, 589, 763, 776
Bst6I	CTCTTC	2 cut(s)	549, 693
BstAPI	GCANNNNNTGC	1 cut(s)	742
BstBAI	YACGTR	1 cut(s)	904
BstDEI	CTNAG	3 cut(s)	402, 417, 444
BstDSI	CCRYGG	1 cut(s)	327
BstENI	CCTNNNNNAGG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	928
BstFNI	CGCG	1 cut(s)	329
BstKTI	GATC	2 cut(s)	808, 823
BstMBI	GATC	2 cut(s)	805, 820
BstMWI	GCNNNNNNNGC	4 cut(s)	335, 344, 365, 742
BstNI	CCWGG	2 cut(s)	571, 873
BstSCI	CCNGG	2 cut(s)	569, 871
BstSFI	CTRYAG	1 cut(s)	226
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	4 cut(s)	43, 325, 658, 729
BstX2I	RGATCY	1 cut(s)	820
BstYI	RGATCY	1 cut(s)	820
BsuRI	GGCC	3 cut(s)	574, 660, 781
BtgI	CCRYGG	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	928
BtsIMutI	CAGTG	1 cut(s)	223
BveI	ACCTGC	1 cut(s)	53
Cfr13I	GGNCC	3 cut(s)	209, 658, 875
Cfr42I	CCGCGG	1 cut(s)	330
CsiI	ACCWGGT	1 cut(s)	871
Csp6I	GTAC	5 cut(s)	106, 315, 373, 429, 453
CviAII	CATG	1 cut(s)	500
CviQI	GTAC	5 cut(s)	106, 315, 373, 429, 453
DdeI	CTNAG	3 cut(s)	402, 417, 444
DpnI	GATC	2 cut(s)	807, 822
DpnII	GATC	2 cut(s)	805, 820
Eam1104I	CTCTTC	2 cut(s)	549, 693
EarI	CTCTTC	2 cut(s)	549, 693
Eco130I	CCWWGG	2 cut(s)	782, 853
Eco24I	GRGCYC	1 cut(s)	58
Eco47I	GGWCC	2 cut(s)	209, 875
Eco88I	CYCGRG	2 cut(s)	57, 941
EcoNI	CCTNNNNNAGG	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	607
EcoRII	CCWGG	2 cut(s)	569, 871
EcoT14I	CCWWGG	2 cut(s)	782, 853
EcoT38I	GRGCYC	1 cut(s)	58
ErhI	CCWWGG	2 cut(s)	782, 853
FaeI	CATG	1 cut(s)	503
FaiI	YATR	8 cut(s)	10, 12, 194, 351, 371, 501, 605, 921
FaqI	GGGAC	1 cut(s)	861
FatI	CATG	1 cut(s)	499
FbaI	TGATCA	1 cut(s)	805
Fnu4HI	GCNGC	5 cut(s)	32, 339, 360, 647, 743
FokI	GGATG	1 cut(s)	915
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	5 cut(s)	32, 339, 360, 647, 743
FspBI	CTAG	4 cut(s)	51, 300, 426, 435
GluI	GCNGC	5 cut(s)	32, 339, 360, 647, 743
HaeIII	GGCC	3 cut(s)	574, 660, 781
HapII	CCGG	3 cut(s)	21, 575, 749
Hin1II	CATG	1 cut(s)	503
HindIII	AAGCTT	1 cut(s)	123
HinfI	GANTC	3 cut(s)	277, 518, 557
HpaII	CCGG	3 cut(s)	21, 575, 749
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	2 cut(s)	423, 453
Hpy188I	TCNGA	5 cut(s)	418, 445, 537, 810, 885
Hpy188III	TCNNGA	5 cut(s)	281, 599, 941, 959, 983
Hpy8I	GTNNAC	2 cut(s)	423, 453
HpyAV	CCTTC	2 cut(s)	134, 190
HpyCH4III	ACNGT	8 cut(s)	76, 227, 377, 457, 581, 589, 763, 776
HpyCH4IV	ACGT	2 cut(s)	431, 903
HpyCH4V	TGCA	6 cut(s)	272, 585, 670, 745, 767, 928
HpyF10VI	GCNNNNNNNGC	4 cut(s)	335, 344, 365, 742
HpyF3I	CTNAG	3 cut(s)	402, 417, 444
HpySE526I	ACGT	2 cut(s)	431, 903
Hsp92II	CATG	1 cut(s)	503
Ksp22I	TGATCA	1 cut(s)	805
KspI	CCGCGG	1 cut(s)	330
Kzo9I	GATC	2 cut(s)	805, 820
Lsp1109I	GCAGC	4 cut(s)	43, 325, 658, 729
LweI	GCATC	1 cut(s)	937
MabI	ACCWGGT	1 cut(s)	871
MaeI	CTAG	4 cut(s)	51, 300, 426, 435
MaeII	ACGT	2 cut(s)	431, 903
MaeIII	GTNAC	1 cut(s)	956
MalI	GATC	2 cut(s)	807, 822
MboI	GATC	2 cut(s)	805, 820
MboII	GAAGA	7 cut(s)	49, 193, 515, 566, 603, 707, 710
MflI	RGATCY	1 cut(s)	820
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	4 cut(s)	217, 607, 619, 907
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	1 cut(s)	571
MnlI	CCTC	5 cut(s)	200, 230, 411, 439, 694
MseI	TTAA	4 cut(s)	71, 135, 393, 843
MspA1I	CMGCKG	2 cut(s)	329, 742
MspI	CCGG	3 cut(s)	21, 575, 749
MspR9I	CCNGG	2 cut(s)	571, 873
MvaI	CCWGG	2 cut(s)	571, 873
MvnI	CGCG	1 cut(s)	329
MwoI	GCNNNNNNNGC	4 cut(s)	335, 344, 365, 742
NdeII	GATC	2 cut(s)	805, 820
NlaIII	CATG	1 cut(s)	503
NlaIV	GGNNCC	5 cut(s)	25, 568, 659, 822, 877
NmuCI	GTSAC	1 cut(s)	956
PaeR7I	CTCGAG	2 cut(s)	57, 941
PaqCI	CACCTGC	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	2 cut(s)	948, 957
PfeI	GAWTC	2 cut(s)	277, 518
PflMI	CCANNNNNTGG	1 cut(s)	953
PkrI	GCNGC	5 cut(s)	33, 340, 361, 648, 744
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
Ppu21I	YACGTR	1 cut(s)	904
PshBI	ATTAAT	1 cut(s)	843
Psp6I	CCWGG	2 cut(s)	569, 871
PspGI	CCWGG	2 cut(s)	569, 871
PspN4I	GGNNCC	5 cut(s)	25, 568, 659, 822, 877
PspPI	GGNCC	3 cut(s)	209, 658, 875
PspXI	VCTCGAGB	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	820
PvuII	CAGCTG	1 cut(s)	742
RsaI	GTAC	5 cut(s)	107, 316, 374, 430, 454
RsaNI	GTAC	5 cut(s)	106, 315, 373, 429, 453
SacII	CCGCGG	1 cut(s)	330
SaqAI	TTAA	4 cut(s)	71, 135, 393, 843
SatI	GCNGC	5 cut(s)	32, 339, 360, 647, 743
Sau3AI	GATC	2 cut(s)	805, 820
Sau96I	GGNCC	3 cut(s)	209, 658, 875
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	2 cut(s)	571, 873
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	9 cut(s)	67, 127, 190, 340, 434, 450, 744, 874, 906
SexAI	ACCWGGT	1 cut(s)	871
SfaNI	GCATC	1 cut(s)	937
SfcI	CTRYAG	1 cut(s)	226
Sfr274I	CTCGAG	2 cut(s)	57, 941
Sfr303I	CCGCGG	1 cut(s)	330
SgrBI	CCGCGG	1 cut(s)	330
SinI	GGWCC	2 cut(s)	209, 875
SlaI	CTCGAG	2 cut(s)	57, 941
SmlI	CTYRAG	2 cut(s)	57, 941
SmoI	CTYRAG	2 cut(s)	57, 941
SpeI	ACTAGT	1 cut(s)	425
Sse9I	AATT	4 cut(s)	217, 607, 619, 907
SsiI	CCGC	7 cut(s)	327, 329, 345, 359, 366, 470, 932
SspMI	CTAG	4 cut(s)	51, 300, 426, 435
StyD4I	CCNGG	2 cut(s)	569, 871
StyI	CCWWGG	2 cut(s)	782, 853
TaaI	ACNGT	8 cut(s)	76, 227, 377, 457, 581, 589, 763, 776
TaiI	ACGT	2 cut(s)	434, 906
TaqI	TCGA	4 cut(s)	58, 179, 280, 942
TasI	AATT	4 cut(s)	217, 607, 619, 907
TatI	WGTACW	1 cut(s)	105
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	2 cut(s)	277, 518
Tru1I	TTAA	4 cut(s)	71, 135, 393, 843
Tru9I	TTAA	4 cut(s)	71, 135, 393, 843
TscAI	CASTG	1 cut(s)	230
TseFI	GTSAC	1 cut(s)	956
TseI	GCWGC	4 cut(s)	31, 338, 646, 742
Tsp45I	GTSAC	1 cut(s)	956
TspDTI	ATGAA	9 cut(s)	27, 209, 369, 369, 516, 620, 861, 882, 926
TspRI	CASTG	1 cut(s)	230
Van91I	CCANNNNNTGG	1 cut(s)	953
VpaK11BI	GGWCC	2 cut(s)	209, 875
VspI	ATTAAT	1 cut(s)	843
XagI	CCTNNNNNAGG	1 cut(s)	171
XapI	RAATTY	2 cut(s)	607, 907
XcmI	CCANNNNNNNNNTGG	1 cut(s)	908
XhoI	CTCGAG	2 cut(s)	57, 941
XspI	CTAG	4 cut(s)	51, 300, 426, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.