AT3G11870

ribonuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
N/A
Physical Location & Seq
Reverse (-)
3746998 .. 3749093
2096 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11870.1

Sequence Viewer

Length: 1665 bp
ATGTGGTTATTGGCCATCTCTCTTGTGGGTCTTCTTGTTGTTGTGGTCTGTGTCTTCCTGAGGTTTTCGAAAGACAAAGGTTTGGATGGTATTGTAAATGAGAAGAAGAGAGATAAAAATTCAGCTCCTCGTGTCTCAGCATCAGGAGAGGATGGTACTAAAAATGAGCAGGTAGAGAAGAAGTCAGATCCTAGTGGAGGATTAGGAGAGGAAAACGAGAAAACAAATTCAGAGTCAAAAGTCTTATCAGTTCCTTCAGACCAGAATATAAACAAGACGTTACCTGTAATGTTACCATCACTAGAACTCCGTAAATACGACGAGAACGAAACCCCTGGGAAAGTGGTTAATCGTAGGTTGTTAGTATCAACTAATGAAATGAAATATGGAAGAAATGGCTATGAGGTGTTTCAGGGTGTTTATGGACGAAGAAGTTCAGTGGCCGTGAAATGTCTTGATCTAGCCCATACTACGGAGGCTTTTATTCAGAACGAGATTGACAATCACTGTTTATGTGACGATCACTCAAATATAATTAGGTTTCATGGTTTGGAGCAAGACCAAAGTTTTGCTTACATTTGTCTAGAGCCTTGGAAATGCAGTTTAGATGATCTAATAAAATTATCTGTCAGAAGAACAAAGAGGGATACTCAAGCGGTAGCTCCAGTGGATGATTTGGAAAAAGTTATGAAAAGAATCAAATTCTGGAAAGAAAAGGGGAAGCCATTACCTCTAACTCCAATGCTAAAACTAATGAGGGATGTAGTTTGTGGGCTTGCCCACTTGCACAAGTTGAAAACAATTCACCGGAACTTGAACCCACAAAATGTGCTAATAATAGTGAAAGATATGACTTTGACTGCCAAGATATCCGATATGAGCTTAAGCAAGCATCTCGGTGGGAAAAAGTCATCATATAAACACCTTGCAACATGTTCTGGTAGTTCAGGATGGCAAGCACCGGAGCAGCTTAACAAAGATAAGAAAAAAAAGGAGGATTTTCCAGCTGACATGTTTAACTTTGGCTGTCTCCTGCATTACGCCGTAATGGGAACACATCCTTTTGGAAGTCCTAGTGAGCGTGATACTAACATCAAGACCAACAATAAAACCAACCTCTCGCTCGTAACGAACCTTGAAGCCATAAACCTCATCGAGCAGTTGCTTAACTACAAACCTGATTTACGTCCTAGTGCAACTCAGGTGCTTCTCCATCCTCTGTTTTGGGACTCCGAAAAGAGGCTTTTTTTCCTTCGGGAGGCTAGTGATCGAATTGAGCTTGATATTACAATGTGGGGCGATCTGAATAAAACAATAGCTCCAAGAGTTTTAGGAGAGAGTAAGGACTGGGCTAGTAAGCTAGGTAAGACCTTCATAACTCACATAGAAAATTTAGCACAAGCCCAACCAGGCCAAGAATCCAGACAGTATAATCGTAGTTACAAGTATTGGAGCCTTCGCCACTTATTAAGATTGATAAGAAACATCCTGAGTCACCACAGAGAGATACTTGATGATCCAAAAATTAAGGAAATGGTGGGAAAGGTTCCTGAAGGATTGGATATCTTCTTTACTGCTCGTTTCCCGAATTTGATGATGGAAATCTACGCATTCATCTCTATGCACTGCAAGGGAGAAGAAGCGTTCGAGAAGTACTTCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04141 ko04210 ko04932 ko05010 map04140 map04141 map04210 map04932 map05010
Pfam Domains
Protein Families
Pkinase Ribonuc_2-5A

Protein Analysis

554

Amino Acids

63.26

Weight (kDa)

8.95

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 135 - 402 4e-22 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 136 - 408 8.1e-32 Protein kinase domain
Ribonuc_2-5A PF06479 414 - 553 1.4e-25 Ribonuclease 2-5A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
AciI CCGC 1 cut(s) 656
AclWI GGATC 2 cut(s) 182, 1511
AcoI YGGCCR 2 cut(s) 12, 441
AcsI RAATTY 5 cut(s) 118, 226, 701, 1390, 1588
AcuI CTGAAG 2 cut(s) 240, 1572
AfaI GTAC 2 cut(s) 157, 1655
AfiI CCNNNNNNNGG 4 cut(s) 197, 472, 1239, 1258
AflII CTTAAG 1 cut(s) 883
AflIII ACRYGT 2 cut(s) 932, 1011
AgsI TTSAA 4 cut(s) 796, 817, 1139, 1660
AjnI CCWGG 2 cut(s) 334, 1408
AluBI AGCT 8 cut(s) 125, 662, 882, 970, 1007, 1279, 1319, 1360
AluI AGCT 8 cut(s) 125, 662, 882, 970, 1007, 1279, 1319, 1360
Alw26I GTCTC 2 cut(s) 139, 1034
AlwI GGATC 2 cut(s) 182, 1511
AoxI GGCC 3 cut(s) 12, 441, 1411
ApeKI GCWGC 1 cut(s) 967
ApoI RAATTY 5 cut(s) 118, 226, 701, 1390, 1588
ArsI GACNNNNNNTTYG 4 cut(s) 218, 250, 551, 583
Asp700I GAANNNNTTC 2 cut(s) 433, 1655
AsuHPI GGTGA 2 cut(s) 797, 1487
AsuII TTCGAA 1 cut(s) 68
AxyI CCTNAGG 1 cut(s) 59
BalI TGGCCA 1 cut(s) 14
BauI CACGAG 1 cut(s) 129
BbsI GAAGAC 2 cut(s) 23, 46
BbvI GCAGC 1 cut(s) 979
BccI CCATC 7 cut(s) 23, 80, 146, 304, 945, 1221, 1591
BceAI ACGGC 2 cut(s) 428, 1028
BcgI CGANNNNNNTGC 2 cut(s) 877, 911
BciT130I CCWGG 2 cut(s) 336, 1410
BciVI GTATCC 1 cut(s) 640
BcoDI GTCTC 2 cut(s) 139, 1034
BfrI CTTAAG 1 cut(s) 883
BfuAI ACCTGC 1 cut(s) 160
BfuI GTATCC 1 cut(s) 640
BisI GCNGC 1 cut(s) 968
BlsI GCNGC 1 cut(s) 969
BmcAI AGTACT 1 cut(s) 1655
Bme1390I CCNGG 2 cut(s) 336, 1410
BmiI GGNNCC 2 cut(s) 1454, 1548
BmrFI CCNGG 2 cut(s) 336, 1410
BmrI ACTGGG 1 cut(s) 1357
BmsI GCATC 2 cut(s) 149, 901
BmuI ACTGGG 1 cut(s) 1357
BpiI GAAGAC 2 cut(s) 23, 46
BplI GAGNNNNNCTC 2 cut(s) 634, 666
BpmI CTGGAG 1 cut(s) 648
Bpu14I TTCGAA 1 cut(s) 68
BpuEI CTTGAG 1 cut(s) 636
BsaBI GATNNNNATC 1 cut(s) 1601
BsaJI CCNNGG 3 cut(s) 334, 335, 590
BsaWI WCCGGW 2 cut(s) 807, 961
BsaXI ACNNNNNCTCC 4 cut(s) 291, 321, 1303, 1333
Bsc4I CCNNNNNNNGG 4 cut(s) 197, 472, 1239, 1258
Bse1I ACTGG 2 cut(s) 665, 1352
Bse21I CCTNAGG 1 cut(s) 59
Bse8I GATNNNNATC 1 cut(s) 1601
BseBI CCWGG 2 cut(s) 336, 1410
BseDI CCNNGG 3 cut(s) 334, 335, 590
BseGI GGATG 8 cut(s) 91, 157, 676, 766, 956, 1057, 1213, 1485
BseJI GATNNNNATC 1 cut(s) 1601
BseLI CCNNNNNNNGG 4 cut(s) 197, 472, 1239, 1258
BseMII CTCAG 4 cut(s) 50, 150, 1214, 1481
BseNI ACTGG 2 cut(s) 665, 1352
BseRI GAGGAG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 979
BshFI GGCC 3 cut(s) 14, 443, 1413
BsiSI CCGG 2 cut(s) 808, 962
BslFI GGGAC 1 cut(s) 1241
BslI CCNNNNNNNGG 4 cut(s) 197, 472, 1239, 1258
BsmAI GTCTC 2 cut(s) 139, 1034
BsmFI GGGAC 1 cut(s) 1241
BsmI GAATGC 1 cut(s) 1610
BsnI GGCC 3 cut(s) 14, 443, 1413
Bsp119I TTCGAA 1 cut(s) 68
Bsp143I GATC 7 cut(s) 187, 457, 520, 610, 1267, 1300, 1516
BspACI CCGC 1 cut(s) 656
BspANI GGCC 3 cut(s) 14, 443, 1413
BspCNI CTCAG 4 cut(s) 51, 149, 1213, 1482
BspLI GGNNCC 2 cut(s) 1454, 1548
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 2 cut(s) 182, 1511
BspT104I TTCGAA 1 cut(s) 68
BspTI CTTAAG 1 cut(s) 883
BsrI ACTGG 2 cut(s) 665, 1352
BssECI CCNNGG 3 cut(s) 334, 335, 590
BssMI GATC 7 cut(s) 187, 457, 520, 610, 1267, 1300, 1516
BssSI CACGAG 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 590
Bst2BI CACGAG 1 cut(s) 129
Bst2UI CCWGG 2 cut(s) 336, 1410
Bst4CI ACNGT 2 cut(s) 509, 1428
Bst6I CTCTTC 1 cut(s) 101
BstAFI CTTAAG 1 cut(s) 883
BstBI TTCGAA 1 cut(s) 68
BstC8I GCNNGC 3 cut(s) 777, 890, 957
BstDEI CTNAG 4 cut(s) 59, 136, 1200, 1490
BstENI CCTNNNNNAGG 2 cut(s) 195, 1256
BstF5I GGATG 8 cut(s) 91, 157, 676, 766, 956, 1057, 1213, 1485
BstKTI GATC 7 cut(s) 190, 460, 523, 613, 1270, 1303, 1519
BstMAI GTCTC 2 cut(s) 139, 1034
BstMBI GATC 7 cut(s) 187, 457, 520, 610, 1267, 1300, 1516
BstNI CCWGG 2 cut(s) 336, 1410
BstNSI RCATGY 2 cut(s) 936, 1015
BstSCI CCNGG 2 cut(s) 334, 1408
BstV1I GCAGC 1 cut(s) 979
BstV2I GAAGAC 2 cut(s) 23, 46
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
Bsu36I CCTNAGG 1 cut(s) 59
BsuI GTATCC 1 cut(s) 640
BsuRI GGCC 3 cut(s) 14, 443, 1413
BtsCI GGATG 8 cut(s) 91, 157, 676, 766, 956, 1057, 1213, 1485
BtsI GCAGTG 1 cut(s) 1624
BtsIMutI CAGTG 4 cut(s) 444, 505, 672, 1624
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 3 cut(s) 777, 890, 957
Csp6I GTAC 2 cut(s) 156, 1654
CviAII CATG 3 cut(s) 545, 933, 1012
CviQI GTAC 2 cut(s) 156, 1654
DdeI CTNAG 4 cut(s) 59, 136, 1200, 1490
DpnI GATC 7 cut(s) 189, 459, 522, 612, 1269, 1302, 1518
DpnII GATC 7 cut(s) 187, 457, 520, 610, 1267, 1300, 1516
EaeI YGGCCR 2 cut(s) 12, 441
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 590
Eco32I GATATC 2 cut(s) 870, 1564
Eco57I CTGAAG 2 cut(s) 240, 1572
Eco81I CCTNAGG 1 cut(s) 59
EcoNI CCTNNNNNAGG 2 cut(s) 195, 1256
EcoRII CCWGG 2 cut(s) 334, 1408
EcoRV GATATC 2 cut(s) 870, 1564
EcoT14I CCWWGG 1 cut(s) 590
ErhI CCWWGG 1 cut(s) 590
FaeI CATG 3 cut(s) 548, 936, 1015
FalI AAGNNNNNCTT 2 cut(s) 556, 588
FaqI GGGAC 1 cut(s) 1241
FatI CATG 3 cut(s) 544, 932, 1011
Fnu4HI GCNGC 1 cut(s) 968
FokI GGATG 8 cut(s) 98, 164, 683, 773, 963, 1044, 1200, 1472
Fsp4HI GCNGC 1 cut(s) 968
GluI GCNGC 1 cut(s) 968
GsuI CTGGAG 1 cut(s) 648
HaeIII GGCC 3 cut(s) 14, 443, 1413
HapII CCGG 2 cut(s) 808, 962
Hin1II CATG 3 cut(s) 548, 936, 1015
HinfI GANTC 5 cut(s) 233, 696, 1229, 1418, 1492
HpaII CCGG 2 cut(s) 808, 962
HphI GGTGA 2 cut(s) 797, 1487
Hpy188I TCNGA 8 cut(s) 187, 232, 259, 489, 632, 874, 1234, 1305
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 5 cut(s) 264, 1262, 1381, 1466, 1547
HpyCH4III ACNGT 2 cut(s) 509, 1428
HpyCH4IV ACGT 2 cut(s) 278, 1186
HpyCH4V TGCA 7 cut(s) 600, 787, 929, 1036, 1196, 1624, 1629
HpyF3I CTNAG 4 cut(s) 59, 136, 1200, 1490
HpySE526I ACGT 2 cut(s) 278, 1186
Hsp92II CATG 3 cut(s) 548, 936, 1015
Kzo9I GATC 7 cut(s) 187, 457, 520, 610, 1267, 1300, 1516
LmnI GCTCC 6 cut(s) 130, 553, 667, 964, 1324, 1452
Lsp1109I GCAGC 1 cut(s) 979
LweI GCATC 2 cut(s) 149, 901
MaeII ACGT 2 cut(s) 278, 1186
MaeIII GTNAC 6 cut(s) 279, 291, 515, 1126, 1439, 1493
MalI GATC 7 cut(s) 189, 459, 522, 612, 1269, 1302, 1518
MboI GATC 7 cut(s) 187, 457, 520, 610, 1267, 1300, 1516
MflI RGATCY 1 cut(s) 187
MlsI TGGCCA 1 cut(s) 14
MluNI TGGCCA 1 cut(s) 14
MlyI GAGTC 3 cut(s) 242, 1223, 1501
Mox20I TGGCCA 1 cut(s) 14
MroXI GAANNNNTTC 2 cut(s) 433, 1655
MscI TGGCCA 1 cut(s) 14
MseI TTAA 7 cut(s) 348, 884, 972, 1017, 1167, 1469, 1527
MslI CAYNNNNRTG 2 cut(s) 897, 1619
Msp20I TGGCCA 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 1007
MspCI CTTAAG 1 cut(s) 883
MspI CCGG 2 cut(s) 808, 962
MspR9I CCNGG 2 cut(s) 336, 1410
Mva1269I GAATGC 1 cut(s) 1610
MvaI CCWGG 2 cut(s) 336, 1410
NdeII GATC 7 cut(s) 187, 457, 520, 610, 1267, 1300, 1516
NlaIII CATG 3 cut(s) 548, 936, 1015
NlaIV GGNNCC 2 cut(s) 1454, 1548
NmuCI GTSAC 2 cut(s) 515, 1493
NspI RCATGY 2 cut(s) 936, 1015
NspV TTCGAA 1 cut(s) 68
PasI CCCWGGG 1 cut(s) 335
PciI ACATGT 2 cut(s) 932, 1011
PcsI WCGNNNNNNNCGW 2 cut(s) 324, 1127
PctI GAATGC 1 cut(s) 1610
PdmI GAANNNNTTC 2 cut(s) 433, 1655
PfeI GAWTC 2 cut(s) 696, 1418
PkrI GCNGC 1 cut(s) 969
PleI GAGTC 3 cut(s) 241, 1223, 1500
PpsI GAGTC 3 cut(s) 241, 1223, 1500
PscI ACATGT 2 cut(s) 932, 1011
Psp6I CCWGG 2 cut(s) 334, 1408
PspGI CCWGG 2 cut(s) 334, 1408
PspN4I GGNNCC 2 cut(s) 1454, 1548
PsuI RGATCY 1 cut(s) 187
PvuII CAGCTG 1 cut(s) 1007
RsaI GTAC 2 cut(s) 157, 1655
RsaNI GTAC 2 cut(s) 156, 1654
RseI CAYNNNNRTG 2 cut(s) 897, 1619
SaqAI TTAA 7 cut(s) 348, 884, 972, 1017, 1167, 1469, 1527
SatI GCNGC 1 cut(s) 968
Sau3AI GATC 7 cut(s) 187, 457, 520, 610, 1267, 1300, 1516
ScaI AGTACT 1 cut(s) 1655
SchI GAGTC 3 cut(s) 242, 1223, 1501
ScrFI CCNGG 2 cut(s) 336, 1410
SfaNI GCATC 2 cut(s) 149, 901
SfuI TTCGAA 1 cut(s) 68
SmiMI CAYNNNNRTG 2 cut(s) 897, 1619
SmlI CTYRAG 2 cut(s) 651, 883
SmoI CTYRAG 2 cut(s) 651, 883
SsiI CCGC 1 cut(s) 656
StyD4I CCNGG 2 cut(s) 334, 1408
StyI CCWWGG 1 cut(s) 590
TaaI ACNGT 2 cut(s) 509, 1428
TaiI ACGT 2 cut(s) 281, 1189
TaqI TCGA 4 cut(s) 68, 1155, 1270, 1647
TatI WGTACW 1 cut(s) 1653
TfiI GAWTC 2 cut(s) 696, 1418
Tru1I TTAA 7 cut(s) 348, 884, 972, 1017, 1167, 1469, 1527
Tru9I TTAA 7 cut(s) 348, 884, 972, 1017, 1167, 1469, 1527
TscAI CASTG 4 cut(s) 444, 512, 672, 1631
TseFI GTSAC 2 cut(s) 515, 1493
TseI GCWGC 1 cut(s) 967
Tsp45I GTSAC 2 cut(s) 515, 1493
TspDTI ATGAA 6 cut(s) 390, 395, 533, 704, 1363, 1603
TspGWI ACGGA 2 cut(s) 299, 488
TspRI CASTG 4 cut(s) 444, 512, 672, 1631
Vha464I CTTAAG 1 cut(s) 883
XagI CCTNNNNNAGG 2 cut(s) 195, 1256
XapI RAATTY 5 cut(s) 118, 226, 701, 1390, 1588
XbaI TCTAGA 1 cut(s) 583
XceI RCATGY 2 cut(s) 936, 1015
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XmnI GAANNNNTTC 2 cut(s) 433, 1655
ZrmI AGTACT 1 cut(s) 1655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.