Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

3818046 .. 3819642

Gene Structure 1597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGAGAGGCGTAACACCAAACTATTACCATTCTTACACTTTCTTCTTCTTCTTCTTCGTTGTCTTATTAGCTCTGTTTCTTCATGTTTTCTCGATAAACACTTTGTCATCTACAGAAACTCTAACAATCTCAAGCAACCGAACCATTGTGTCTCCCGGTAACATCTTCGAGCTAGGTTTCTTCAAAACTACAACAAGCTCTCGAAATGGTGATCATTGGTATCTTGGGATTTGGTACAAGTCAATCTCTGAGAGAACTTATGTATGGGTTGCCAACAGAGATAACCCTCTTTCCAAGTCTATCGGAACATTAAAGATCTCTTACGCTAACCTCGTCCTTCTTGATCATTCTGGTACTCTTGTTTGGTCAACGAATCTAACGAGAACGGTGAAATCTCCAGTGGTGGCAGAGCTGCTCGATAACGGCAACTTCGTGCTTAGAGACTCCAAAGGCAACTATCAAAACCGATTCTTGTGGCAAAGCTTTGATTATCCGGTGGACACATTACTCCCGGAGATGAAAATTGGTCGGGATCTCAAAACAGGACACGAGACTTTCCTCAGTTCTTGGAGAAGCCCTTATGATCCCTCAAGCGGAGACTTCTCGTTCAAACTCGGAACTCAAGGGCTACCTGAGTTTTATCTTTTCAAGAAAGAGTTTCTATTGTACCGATCCGGTCCGTGGAATGGAGTCGGGTTTAGTGGCATACCGACGATGCAAAACTGGAGCTACTTTGACGTTGTTAACAACTTCATAGAGAACAGAGGGGAAGTTGCTTATAGTTTCAAAGTCACCGACCATAGCATGCACTACGTGAGATTTACACTGACTACCGAAAGATTATTACAGATATCCAGATGGGATACGACATCATCGGAATGGAACTTGTTTGGCGTTTTACCGACCGAGAAATGCGATTTGTACCAAATATGTGGTCGTGATAGTTATTGTGACACGAAAACATCACCGACGTGTAACTGTATCAAAGGCTTTGTTCCAAAGAATGTGACGGCTTGGGCTTTGGGAGATACATTTGAGGGATGTGTGAGGAAGTCACGACTGAACTGCCACAGAGATGGGTTTTTTCTTTTGATGAAGAGGATGAAGCTGCCTGGTACAAGCACAGCAATTGTGGACAAGACAATTGGGTTGAATGAATGTAAGGAGAGGTGTTCTAAGGATTGTAATTGTACCGGGTTTGCGAATAAGGATATCCAAAATGGTGGGTCGGGTTGTGTGATTTGGACCGGAGGAGCTCATGGATATGAGGAATTACGTCGTCGGAGGTCAAGATCTATATGTCAAAATAGGCCTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0032870 GO:0033036 GO:0033993 GO:0034613 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051641 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070727 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 DUF3660 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

439

Amino Acids

50.22

Weight (kDa)

8.98

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	86 - 191	1.1e-34	D-mannose binding lectin
S_locus_glycop	PF00954	223 - 335	9.5e-35	S-locus glycoprotein domain
PAN_2	PF08276	356 - 417	5.1e-20	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	594
AclWI	GGATC	3 cut(s)	540, 578, 666
AdeI	CACNNNGTG	1 cut(s)	814
AfaI	GTAC	6 cut(s)	236, 355, 668, 923, 1117, 1192
AfiI	CCNNNNNNNGG	3 cut(s)	593, 681, 686
AflIII	ACRYGT	1 cut(s)	971
AgsI	TTSAA	5 cut(s)	184, 610, 649, 787, 1153
AjiI	CACGTC	1 cut(s)	972
AjnI	CCWGG	1 cut(s)	1111
AleI	CACNNNNGTG	1 cut(s)	970
AluBI	AGCT	8 cut(s)	71, 172, 198, 412, 483, 729, 1108, 1256
AluI	AGCT	8 cut(s)	71, 172, 198, 412, 483, 729, 1108, 1256
Alw21I	GWGCWC	1 cut(s)	1258
Alw26I	GTCTC	4 cut(s)	156, 435, 545, 591
AlwI	GGATC	3 cut(s)	540, 578, 666
AoxI	GGCC	1 cut(s)	1310
ApeKI	GCWGC	2 cut(s)	412, 1108
ArsI	GACNNNNNNTTYG	2 cut(s)	919, 951
AspS9I	GGNCC	2 cut(s)	677, 1245
AsuC2I	CCSGG	3 cut(s)	156, 512, 1195
AsuHPI	GGTGA	4 cut(s)	221, 400, 784, 957
AvaII	GGWCC	2 cut(s)	677, 1245
BaeI	ACNNNNGTAYC	2 cut(s)	345, 378
BanII	GRGCYC	1 cut(s)	1258
BauI	CACGAG	1 cut(s)	548
Bbv12I	GWGCWC	1 cut(s)	1258
BbvI	GCAGC	2 cut(s)	399, 1095
BccI	CCATC	2 cut(s)	852, 1070
BceAI	ACGGC	2 cut(s)	439, 1026
BcgI	CGANNNNNNTGC	2 cut(s)	1047, 1081
BciT130I	CCWGG	1 cut(s)	1113
BciVI	GTATCC	1 cut(s)	856
BclI	TGATCA	2 cut(s)	211, 343
BcnI	CCSGG	3 cut(s)	156, 512, 1195
BcoDI	GTCTC	4 cut(s)	156, 435, 545, 591
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	111
BfuI	GTATCC	1 cut(s)	856
BglII	AGATCT	2 cut(s)	315, 1292
BisI	GCNGC	2 cut(s)	413, 1109
BlsI	GCNGC	2 cut(s)	414, 1110
Bme1390I	CCNGG	4 cut(s)	156, 512, 1113, 1195
Bme18I	GGWCC	2 cut(s)	677, 1245
BmgBI	CACGTC	1 cut(s)	972
BmgT120I	GGNCC	2 cut(s)	677, 1245
BmrFI	CCNGG	4 cut(s)	156, 512, 1113, 1195
BmsI	GCATC	1 cut(s)	705
BpmI	CTGGAG	2 cut(s)	381, 745
BpuEI	CTTGAG	3 cut(s)	115, 574, 606
BpuMI	CCSGG	3 cut(s)	156, 512, 1195
BsaAI	YACGTR	1 cut(s)	814
BsaJI	CCNNGG	1 cut(s)	680
BsaWI	WCCGGW	3 cut(s)	493, 674, 1247
Bsc4I	CCNNNNNNNGG	3 cut(s)	593, 681, 686
Bse1I	ACTGG	2 cut(s)	398, 728
BseBI	CCWGG	1 cut(s)	1113
BseDI	CCNNGG	1 cut(s)	680
BseGI	GGATG	2 cut(s)	1046, 1107
BseLI	CCNNNNNNNGG	3 cut(s)	593, 681, 686
BseMII	CTCAG	3 cut(s)	240, 574, 624
BseNI	ACTGG	2 cut(s)	398, 728
BseRI	GAGGAG	1 cut(s)	1266
BseXI	GCAGC	2 cut(s)	399, 1095
Bsh1285I	CGRYCG	1 cut(s)	906
BshFI	GGCC	1 cut(s)	1312
BsiEI	CGRYCG	1 cut(s)	906
BsiHKAI	GWGCWC	1 cut(s)	1258
BsiSI	CCGG	6 cut(s)	156, 494, 512, 675, 1194, 1248
BslI	CCNNNNNNNGG	3 cut(s)	593, 681, 686
BsmAI	GTCTC	4 cut(s)	156, 435, 545, 591
BsnI	GGCC	1 cut(s)	1312
Bsp1286I	GDGCHC	1 cut(s)	1258
Bsp143I	GATC	7 cut(s)	211, 315, 343, 532, 583, 671, 1292
BspACI	CCGC	1 cut(s)	594
BspANI	GGCC	1 cut(s)	1312
BspCNI	CTCAG	3 cut(s)	241, 573, 625
BspPI	GGATC	3 cut(s)	540, 578, 666
BsrI	ACTGG	2 cut(s)	398, 728
BssECI	CCNNGG	1 cut(s)	680
BssMI	GATC	7 cut(s)	211, 315, 343, 532, 583, 671, 1292
BssSI	CACGAG	1 cut(s)	548
Bst2BI	CACGAG	1 cut(s)	548
Bst2UI	CCWGG	1 cut(s)	1113
Bst4CI	ACNGT	2 cut(s)	388, 980
Bst6I	CTCTTC	1 cut(s)	1091
BstBAI	YACGTR	1 cut(s)	814
BstC8I	GCNNGC	1 cut(s)	806
BstDEI	CTNAG	5 cut(s)	249, 437, 560, 633, 1176
BstDSI	CCRYGG	1 cut(s)	680
BstF5I	GGATG	2 cut(s)	1046, 1107
BstKTI	GATC	7 cut(s)	214, 318, 346, 535, 586, 674, 1295
BstMAI	GTCTC	4 cut(s)	156, 435, 545, 591
BstMBI	GATC	7 cut(s)	211, 315, 343, 532, 583, 671, 1292
BstMCI	CGRYCG	1 cut(s)	906
BstNI	CCWGG	1 cut(s)	1113
BstNSI	RCATGY	1 cut(s)	808
BstSCI	CCNGG	4 cut(s)	154, 510, 1111, 1193
BstSFI	CTRYAG	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	399, 1095
BstX2I	RGATCY	3 cut(s)	315, 532, 1292
BstXI	CCANNNNNNTGG	3 cut(s)	932, 1076, 1223
BstYI	RGATCY	3 cut(s)	315, 532, 1292
BsuI	GTATCC	1 cut(s)	856
BsuRI	GGCC	1 cut(s)	1312
BtgI	CCRYGG	1 cut(s)	680
BtrI	CACGTC	1 cut(s)	972
BtsCI	GGATG	2 cut(s)	1046, 1107
BtsIMutI	CAGTG	2 cut(s)	405, 824
Cac8I	GCNNGC	1 cut(s)	806
Cfr13I	GGNCC	2 cut(s)	677, 1245
CpoI	CGGWCCG	1 cut(s)	677
Csp6I	GTAC	6 cut(s)	235, 354, 667, 922, 1116, 1191
CspI	CGGWCCG	1 cut(s)	677
CviAII	CATG	3 cut(s)	83, 805, 1259
CviQI	GTAC	6 cut(s)	235, 354, 667, 922, 1116, 1191
DdeI	CTNAG	5 cut(s)	249, 437, 560, 633, 1176
DpnI	GATC	7 cut(s)	213, 317, 345, 534, 585, 673, 1294
DpnII	GATC	7 cut(s)	211, 315, 343, 532, 583, 671, 1292
DraIII	CACNNNGTG	1 cut(s)	814
Eam1104I	CTCTTC	1 cut(s)	1091
EarI	CTCTTC	1 cut(s)	1091
Ecl136II	GAGCTC	1 cut(s)	1256
Eco147I	AGGCCT	1 cut(s)	1312
Eco24I	GRGCYC	1 cut(s)	1258
Eco32I	GATATC	2 cut(s)	852, 1213
Eco47I	GGWCC	2 cut(s)	677, 1245
Eco53kI	GAGCTC	1 cut(s)	1256
EcoICRI	GAGCTC	1 cut(s)	1256
EcoRII	CCWGG	1 cut(s)	1111
EcoRV	GATATC	2 cut(s)	852, 1213
EcoT38I	GRGCYC	1 cut(s)	1258
FaeI	CATG	3 cut(s)	86, 808, 1262
FatI	CATG	3 cut(s)	82, 804, 1258
FbaI	TGATCA	2 cut(s)	211, 343
Fnu4HI	GCNGC	2 cut(s)	413, 1109
FokI	GGATG	2 cut(s)	1053, 1114
FriOI	GRGCYC	1 cut(s)	1258
Fsp4HI	GCNGC	2 cut(s)	413, 1109
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	2 cut(s)	413, 1109
GsuI	CTGGAG	2 cut(s)	381, 745
HaeIII	GGCC	1 cut(s)	1312
HapII	CCGG	6 cut(s)	156, 494, 512, 675, 1194, 1248
Hin1II	CATG	3 cut(s)	86, 808, 1262
HincII	GTYRAC	2 cut(s)	369, 745
HindII	GTYRAC	2 cut(s)	369, 745
HindIII	AAGCTT	1 cut(s)	481
HinfI	GANTC	4 cut(s)	373, 443, 468, 690
HpaI	GTTAAC	1 cut(s)	745
HpaII	CCGG	6 cut(s)	156, 494, 512, 675, 1194, 1248
HphI	GGTGA	4 cut(s)	221, 400, 784, 957
Hpy166II	GTNNAC	4 cut(s)	369, 499, 745, 1135
Hpy188I	TCNGA	5 cut(s)	250, 305, 617, 877, 1284
Hpy188III	TCNNGA	9 cut(s)	91, 201, 341, 530, 649, 855, 938, 1056, 1290
Hpy8I	GTNNAC	4 cut(s)	369, 499, 745, 1135
Hpy99I	CGWCG	4 cut(s)	715, 973, 1281, 1284
HpyAV	CCTTC	1 cut(s)	347
HpyCH4III	ACNGT	2 cut(s)	388, 980
HpyCH4IV	ACGT	4 cut(s)	738, 813, 971, 1276
HpyCH4V	TGCA	2 cut(s)	718, 808
HpyF3I	CTNAG	5 cut(s)	249, 437, 560, 633, 1176
HpySE526I	ACGT	4 cut(s)	738, 813, 971, 1276
Hsp92II	CATG	3 cut(s)	86, 808, 1262
Ksp22I	TGATCA	2 cut(s)	211, 343
KspAI	GTTAAC	1 cut(s)	745
Kzo9I	GATC	7 cut(s)	211, 315, 343, 532, 583, 671, 1292
LmnI	GCTCC	2 cut(s)	726, 1253
Lsp1109I	GCAGC	2 cut(s)	399, 1095
LweI	GCATC	1 cut(s)	705
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	4 cut(s)	738, 813, 971, 1276
MaeIII	GTNAC	7 cut(s)	10, 158, 790, 950, 974, 1006, 1053
MalI	GATC	7 cut(s)	213, 317, 345, 534, 585, 673, 1294
MboI	GATC	7 cut(s)	211, 315, 343, 532, 583, 671, 1292
MboII	GAAGA	9 cut(s)	34, 37, 40, 43, 46, 71, 157, 172, 1108
MfeI	CAATTG	2 cut(s)	1128, 1143
MflI	RGATCY	3 cut(s)	315, 532, 1292
MhlI	GDGCHC	1 cut(s)	1258
MluCI	AATT	5 cut(s)	522, 1128, 1143, 1186, 1271
MlyI	GAGTC	2 cut(s)	437, 699
MmeI	TCCRAC	1 cut(s)	1262
MseI	TTAA	2 cut(s)	311, 744
MslI	CAYNNNNRTG	4 cut(s)	877, 970, 1074, 1263
MspI	CCGG	6 cut(s)	156, 494, 512, 675, 1194, 1248
MspR9I	CCNGG	4 cut(s)	156, 512, 1113, 1195
MunI	CAATTG	2 cut(s)	1128, 1143
MvaI	CCWGG	1 cut(s)	1113
NciI	CCSGG	3 cut(s)	156, 512, 1195
NdeII	GATC	7 cut(s)	211, 315, 343, 532, 583, 671, 1292
NlaIII	CATG	3 cut(s)	86, 808, 1262
NmuCI	GTSAC	4 cut(s)	790, 950, 1006, 1053
NspI	RCATGY	1 cut(s)	808
OliI	CACNNNNGTG	1 cut(s)	970
PaeI	GCATGC	1 cut(s)	808
PceI	AGGCCT	1 cut(s)	1312
PcsI	WCGNNNNNNNCGW	3 cut(s)	330, 377, 429
PfeI	GAWTC	2 cut(s)	373, 468
PfoI	TCCNGGA	1 cut(s)	510
PkrI	GCNGC	2 cut(s)	414, 1110
PleI	GAGTC	2 cut(s)	437, 698
PpsI	GAGTC	2 cut(s)	437, 698
Ppu21I	YACGTR	1 cut(s)	814
Psp124BI	GAGCTC	1 cut(s)	1258
Psp6I	CCWGG	1 cut(s)	1111
PspGI	CCWGG	1 cut(s)	1111
PspPI	GGNCC	2 cut(s)	677, 1245
PsuI	RGATCY	3 cut(s)	315, 532, 1292
RsaI	GTAC	6 cut(s)	236, 355, 668, 923, 1117, 1192
RsaNI	GTAC	6 cut(s)	235, 354, 667, 922, 1116, 1191
RseI	CAYNNNNRTG	4 cut(s)	877, 970, 1074, 1263
Rsr2I	CGGWCCG	1 cut(s)	677
RsrII	CGGWCCG	1 cut(s)	677
SacI	GAGCTC	1 cut(s)	1258
SaqAI	TTAA	2 cut(s)	311, 744
SatI	GCNGC	2 cut(s)	413, 1109
Sau3AI	GATC	7 cut(s)	211, 315, 343, 532, 583, 671, 1292
Sau96I	GGNCC	2 cut(s)	677, 1245
SchI	GAGTC	2 cut(s)	437, 699
ScrFI	CCNGG	4 cut(s)	156, 512, 1113, 1195
SduI	GDGCHC	1 cut(s)	1258
SfaNI	GCATC	1 cut(s)	705
SfcI	CTRYAG	1 cut(s)	111
SinI	GGWCC	2 cut(s)	677, 1245
SmiMI	CAYNNNNRTG	4 cut(s)	877, 970, 1074, 1263
SmlI	CTYRAG	3 cut(s)	130, 589, 621
SmoI	CTYRAG	3 cut(s)	130, 589, 621
SphI	GCATGC	1 cut(s)	808
Sse9I	AATT	5 cut(s)	522, 1128, 1143, 1186, 1271
SseBI	AGGCCT	1 cut(s)	1312
SsiI	CCGC	1 cut(s)	594
SspMI	CTAG	1 cut(s)	173
SstI	GAGCTC	1 cut(s)	1258
StuI	AGGCCT	1 cut(s)	1312
StyD4I	CCNGG	4 cut(s)	154, 510, 1111, 1193
TaaI	ACNGT	2 cut(s)	388, 980
TaiI	ACGT	4 cut(s)	741, 816, 974, 1279
TaqI	TCGA	4 cut(s)	92, 168, 202, 417
TaqII	GACCGA	1 cut(s)	920
TasI	AATT	5 cut(s)	522, 1128, 1143, 1186, 1271
TfiI	GAWTC	2 cut(s)	373, 468
Tru1I	TTAA	2 cut(s)	311, 744
Tru9I	TTAA	2 cut(s)	311, 744
TscAI	CASTG	2 cut(s)	405, 831
TseFI	GTSAC	4 cut(s)	790, 950, 1006, 1053
TseI	GCWGC	2 cut(s)	412, 1108
Tsp45I	GTSAC	4 cut(s)	790, 950, 1006, 1053
TspDTI	ATGAA	6 cut(s)	71, 533, 742, 1109, 1118, 1170
TspGWI	ACGGA	1 cut(s)	669
TspRI	CASTG	2 cut(s)	405, 831
VpaK11BI	GGWCC	2 cut(s)	677, 1245
XceI	RCATGY	1 cut(s)	808
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.