Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

3874487 .. 3876302

Gene Structure 1816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12145.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGAAGCTCTTTGTTCATCTCTCTATCTTCTTCTCCATCCTCTTCATCACTCTCCCATCTTCTTACAGCTGCACCGAAAATGACAAGAATGCCCTCCTTCAAATCAAGAAAGCACTTGGCAATCCTCCCCTTCTATCCTCCTGGAACCCCCGAACCGACTGTTGTACCGGCTGGACCGGCGTCGAATGCACTAACCGTCGCGTTACCGGTCTCAGCGTTACCTCCGGCGAAGTCTCCGGTCAGATCTCGTACCAGATCGGCGACCTCGTTGACCTCCGTACACTAGATTTCAGCTACCTGCCACACCTCACCGGAAACATCCCACGCACCATCACCAAACTCAAGAACCTCAACACTCTCTACTTGAAGCACACTAGTCTCTCCGGTCCGATTCCTGATTACATCAGCGAGCTCAAGAGCCTCACGTTCTTGGACCTTTCTTTTAACCAATTTACCGGTCCAATTCCCGGTTCGCTATCTCAGATGCCGAAGCTTGAAGCCATTCAAATCAACGATAATAAGCTAACCGGTTCTATACCAAACTCTTTCGGTTCTTTTGTTGGCAACGTCCCTAATCTCTACTTGTCTAACAATAAGCTGTCAGGAAAAATACCGGAATCGTTGTCTAAATACGACTTCAACGCAGTGGATTTGTCGGGAAATGGTTTCGAAGGAGATGCCTTTATGTTCTTCGGACGGAACAAAACAACAGTACGAGTGGATTTGTCGAGAAACATGTTTAATTTCGATCTCGTCAAGGTTAAGTTCGCTAGAAGCATAGTTTCGTTGGATCTGAGCCAGAACCATATCTACGGGAAGATACCACCAGCACTGACTAAACTACACCTCGAGCATTTCAACGTGAGCGACAACCATCTCTGCGGAAAAATCCCAAGTGGCGGTCTACTTCAGACCTTTGAACCATCTGCCTTCGCTCACAACATCTGTCTTTGTGGAACTCCCCTTAAGGCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0007275 GO:0008134 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0010228 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048471 GO:0048506 GO:0048509 GO:0048510 GO:0048571 GO:0048573 GO:0048574 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0061458 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6

Protein Analysis

325

Amino Acids

35.81

Weight (kDa)

8.7

Isoelectric Point (pI)

30.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	27 - 64	1.7e-12	Leucine rich repeat N-terminal domain
LRR_14	PF23598	84 - 171	8e-08	Leucine-rich repeat region
LRR_8	PF13855	108 - 151	4.1e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	306
AccI	GTMKAC	1 cut(s)	904
AccII	CGCG	1 cut(s)	201
AciI	CCGC	2 cut(s)	882, 900
AclWI	GGATC	1 cut(s)	798
AcuI	CTGAAG	1 cut(s)	893
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	4 cut(s)	166, 251, 280, 714
AfiI	CCNNNNNNNGG	2 cut(s)	467, 899
AflII	CTTAAG	1 cut(s)	965
AflIII	ACRYGT	1 cut(s)	735
AgeI	ACCGGT	3 cut(s)	206, 455, 527
AgsI	TTSAA	7 cut(s)	101, 367, 497, 506, 640, 859, 920
AhlI	ACTAGT	1 cut(s)	374
AjnI	CCWGG	1 cut(s)	140
AjuI	GAANNNNNNNTTGG	2 cut(s)	454, 486
AluBI	AGCT	7 cut(s)	7, 69, 294, 412, 493, 523, 598
AluI	AGCT	7 cut(s)	7, 69, 294, 412, 493, 523, 598
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	3 cut(s)	215, 238, 383
AlwI	GGATC	1 cut(s)	798
Ama87I	CYCGRG	1 cut(s)	848
ApeKI	GCWGC	1 cut(s)	69
AsiGI	ACCGGT	3 cut(s)	206, 455, 527
Asp700I	GAANNNNTTC	1 cut(s)	501
AspS9I	GGNCC	4 cut(s)	174, 386, 433, 458
AsuC2I	CCSGG	1 cut(s)	468
AsuHPI	GGTGA	2 cut(s)	301, 325
AsuII	TTCGAA	1 cut(s)	669
AvaI	CYCGRG	1 cut(s)	848
AvaII	GGWCC	4 cut(s)	174, 386, 433, 458
BaeI	ACNNNNGTAYC	2 cut(s)	148, 181
BanII	GRGCYC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	5 cut(s)	44, 64, 338, 882, 931
BcgI	CGANNNNNNTGC	2 cut(s)	659, 693
BciT130I	CCWGG	1 cut(s)	142
BcnI	CCSGG	1 cut(s)	468
BcoDI	GTCTC	3 cut(s)	215, 238, 383
BcuI	ACTAGT	1 cut(s)	374
BfaI	CTAG	3 cut(s)	284, 375, 771
BfrI	CTTAAG	1 cut(s)	965
BfuAI	ACCTGC	1 cut(s)	306
BglII	AGATCT	1 cut(s)	243
BisI	GCNGC	1 cut(s)	70
BlsI	GCNGC	1 cut(s)	71
Bme1390I	CCNGG	2 cut(s)	142, 468
Bme18I	GGWCC	4 cut(s)	174, 386, 433, 458
BmeT110I	CYCGRG	1 cut(s)	848
BmgT120I	GGNCC	4 cut(s)	174, 386, 433, 458
BmiI	GGNNCC	1 cut(s)	146
BmrFI	CCNGG	2 cut(s)	142, 468
BmsI	GCATC	2 cut(s)	474, 667
BoxI	GACNNNNGTC	1 cut(s)	179
Bpu14I	TTCGAA	1 cut(s)	669
BpuEI	CTTGAG	2 cut(s)	326, 398
BpuMI	CCSGG	1 cut(s)	468
BsaHI	GRCGYC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	215
BsaWI	WCCGGW	7 cut(s)	206, 236, 311, 383, 455, 527, 613
Bsc4I	CCNNNNNNNGG	2 cut(s)	467, 899
Bse118I	RCCGGY	5 cut(s)	167, 176, 206, 455, 527
BseBI	CCWGG	1 cut(s)	142
BseGI	GGATG	2 cut(s)	36, 318
BseLI	CCNNNNNNNGG	2 cut(s)	467, 899
BseMII	CTCAG	3 cut(s)	226, 494, 785
BseXI	GCAGC	1 cut(s)	56
BsgI	GTGCAG	1 cut(s)	55
Bsh1236I	CGCG	1 cut(s)	201
BshTI	ACCGGT	3 cut(s)	206, 455, 527
BsiHKAI	GWGCWC	1 cut(s)	414
BsiHKCI	CYCGRG	1 cut(s)	848
BslFI	GGGAC	1 cut(s)	554
BslI	CCNNNNNNNGG	2 cut(s)	467, 899
BsmAI	GTCTC	3 cut(s)	215, 238, 383
BsmFI	GGGAC	1 cut(s)	554
BsmI	GAATGC	2 cut(s)	94, 191
Bso31I	GGTCTC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	848
Bsp119I	TTCGAA	1 cut(s)	669
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	4 cut(s)	243, 255, 748, 790
BspACI	CCGC	2 cut(s)	882, 900
BspCNI	CTCAG	3 cut(s)	225, 493, 786
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	146
BspMI	ACCTGC	1 cut(s)	306
BspPI	GGATC	1 cut(s)	798
BspT104I	TTCGAA	1 cut(s)	669
BspTI	CTTAAG	1 cut(s)	965
BspTNI	GGTCTC	1 cut(s)	215
BsrFI	RCCGGY	5 cut(s)	167, 176, 206, 455, 527
BssAI	RCCGGY	5 cut(s)	167, 176, 206, 455, 527
BssMI	GATC	4 cut(s)	243, 255, 748, 790
BssNI	GRCGYC	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	142
Bst4CI	ACNGT	3 cut(s)	161, 197, 712
Bst6I	CTCTTC	1 cut(s)	47
BstACI	GRCGYC	1 cut(s)	180
BstAFI	CTTAAG	1 cut(s)	965
BstBI	TTCGAA	1 cut(s)	669
BstC8I	GCNNGC	1 cut(s)	410
BstDEI	CTNAG	3 cut(s)	212, 480, 794
BstF5I	GGATG	2 cut(s)	36, 318
BstFNI	CGCG	1 cut(s)	201
BstKTI	GATC	4 cut(s)	246, 258, 751, 793
BstMAI	GTCTC	3 cut(s)	215, 238, 383
BstMBI	GATC	4 cut(s)	243, 255, 748, 790
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 186
BstNI	CCWGG	1 cut(s)	142
BstNSI	RCATGY	1 cut(s)	739
BstPAI	GACNNNNGTC	1 cut(s)	179
BstSCI	CCNGG	2 cut(s)	140, 466
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	56
BstX2I	RGATCY	2 cut(s)	243, 790
BstYI	RGATCY	2 cut(s)	243, 790
BtsCI	GGATG	2 cut(s)	36, 318
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	2 cut(s)	651, 830
BveI	ACCTGC	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	410
Cfr10I	RCCGGY	5 cut(s)	167, 176, 206, 455, 527
Cfr13I	GGNCC	4 cut(s)	174, 386, 433, 458
CpoI	CGGWCCG	1 cut(s)	386
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	4 cut(s)	165, 250, 279, 713
CspAI	ACCGGT	3 cut(s)	206, 455, 527
CspI	CGGWCCG	1 cut(s)	386
CviAII	CATG	1 cut(s)	736
CviQI	GTAC	4 cut(s)	165, 250, 279, 713
DdeI	CTNAG	3 cut(s)	212, 480, 794
DpnI	GATC	4 cut(s)	245, 257, 750, 792
DpnII	GATC	4 cut(s)	243, 255, 748, 790
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	4 cut(s)	174, 386, 433, 458
Eco53kI	GAGCTC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	893
Eco88I	CYCGRG	1 cut(s)	848
EcoICRI	GAGCTC	1 cut(s)	412
EcoRII	CCWGG	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	414
FaeI	CATG	1 cut(s)	739
FaiI	YATR	5 cut(s)	536, 686, 737, 779, 807
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	1 cut(s)	735
FblI	GTMKAC	1 cut(s)	904
Fnu4HI	GCNGC	1 cut(s)	70
FokI	GGATG	2 cut(s)	23, 305
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	1 cut(s)	70
FspBI	CTAG	3 cut(s)	284, 375, 771
GluI	GCNGC	1 cut(s)	70
HgaI	GACGC	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	1 cut(s)	739
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	2 cut(s)	391, 617
HphI	GGTGA	2 cut(s)	301, 325
Hpy166II	GTNNAC	3 cut(s)	271, 281, 905
Hpy188I	TCNGA	6 cut(s)	243, 390, 483, 695, 795, 912
Hpy188III	TCNNGA	7 cut(s)	106, 343, 395, 415, 603, 657, 729
Hpy8I	GTNNAC	3 cut(s)	271, 281, 905
Hpy99I	CGWCG	2 cut(s)	185, 201
HpyAV	CCTTC	4 cut(s)	107, 140, 665, 940
HpyCH4III	ACNGT	3 cut(s)	161, 197, 712
HpyCH4IV	ACGT	3 cut(s)	425, 567, 861
HpyCH4V	TGCA	2 cut(s)	72, 189
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 186
HpyF3I	CTNAG	3 cut(s)	212, 480, 794
HpySE526I	ACGT	3 cut(s)	425, 567, 861
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	739
Kzo9I	GATC	4 cut(s)	243, 255, 748, 790
Lsp1109I	GCAGC	1 cut(s)	56
LweI	GCATC	2 cut(s)	474, 667
MaeI	CTAG	3 cut(s)	284, 375, 771
MaeII	ACGT	3 cut(s)	425, 567, 861
MaeIII	GTNAC	2 cut(s)	202, 217
MalI	GATC	4 cut(s)	245, 257, 750, 792
MboI	GATC	4 cut(s)	243, 255, 748, 790
MboII	GAAGA	6 cut(s)	19, 22, 34, 51, 682, 829
MflI	RGATCY	2 cut(s)	243, 790
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	3 cut(s)	449, 462, 742
MmeI	TCCRAC	1 cut(s)	768
MroXI	GAANNNNTTC	1 cut(s)	501
MseI	TTAA	5 cut(s)	444, 741, 762, 966, 976
MspA1I	CMGCKG	1 cut(s)	69
MspCI	CTTAAG	1 cut(s)	965
MspR9I	CCNGG	2 cut(s)	142, 468
Mva1269I	GAATGC	2 cut(s)	94, 191
MvaI	CCWGG	1 cut(s)	142
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	177, 186
NciI	CCSGG	1 cut(s)	468
NdeII	GATC	4 cut(s)	243, 255, 748, 790
NlaIII	CATG	1 cut(s)	739
NlaIV	GGNNCC	1 cut(s)	146
NspI	RCATGY	1 cut(s)	739
NspV	TTCGAA	1 cut(s)	669
PaeR7I	CTCGAG	1 cut(s)	848
PciI	ACATGT	1 cut(s)	735
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PctI	GAATGC	2 cut(s)	94, 191
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	391, 617
PfoI	TCCNGGA	1 cut(s)	140
PinAI	ACCGGT	3 cut(s)	206, 455, 527
PkrI	GCNGC	1 cut(s)	71
PscI	ACATGT	1 cut(s)	735
PshAI	GACNNNNGTC	1 cut(s)	179
Psp124BI	GAGCTC	1 cut(s)	414
Psp6I	CCWGG	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	146
PspPI	GGNCC	4 cut(s)	174, 386, 433, 458
PspXI	VCTCGAGB	1 cut(s)	848
PsrI	GAACNNNNNNTAC	2 cut(s)	794, 826
PsuI	RGATCY	2 cut(s)	243, 790
PvuII	CAGCTG	1 cut(s)	69
RsaI	GTAC	4 cut(s)	166, 251, 280, 714
RsaNI	GTAC	4 cut(s)	165, 250, 279, 713
Rsr2I	CGGWCCG	1 cut(s)	386
RsrII	CGGWCCG	1 cut(s)	386
SacI	GAGCTC	1 cut(s)	414
SaqAI	TTAA	5 cut(s)	444, 741, 762, 966, 976
SatI	GCNGC	1 cut(s)	70
Sau3AI	GATC	4 cut(s)	243, 255, 748, 790
Sau96I	GGNCC	4 cut(s)	174, 386, 433, 458
ScrFI	CCNGG	2 cut(s)	142, 468
SduI	GDGCHC	1 cut(s)	414
SfaNI	GCATC	2 cut(s)	474, 667
Sfr274I	CTCGAG	1 cut(s)	848
SfuI	TTCGAA	1 cut(s)	669
SinI	GGWCC	4 cut(s)	174, 386, 433, 458
SlaI	CTCGAG	1 cut(s)	848
SmlI	CTYRAG	4 cut(s)	341, 413, 848, 965
SmoI	CTYRAG	4 cut(s)	341, 413, 848, 965
SpeI	ACTAGT	1 cut(s)	374
Sse9I	AATT	3 cut(s)	449, 462, 742
SsiI	CCGC	2 cut(s)	882, 900
SspMI	CTAG	3 cut(s)	284, 375, 771
SstI	GAGCTC	1 cut(s)	414
StyD4I	CCNGG	2 cut(s)	140, 466
TaaI	ACNGT	3 cut(s)	161, 197, 712
TaiI	ACGT	3 cut(s)	428, 570, 864
TaqI	TCGA	5 cut(s)	183, 669, 728, 747, 849
TasI	AATT	3 cut(s)	449, 462, 742
TfiI	GAWTC	2 cut(s)	391, 617
Tru1I	TTAA	5 cut(s)	444, 741, 762, 966, 976
Tru9I	TTAA	5 cut(s)	444, 741, 762, 966, 976
TscAI	CASTG	2 cut(s)	651, 837
TseI	GCWGC	1 cut(s)	69
TspDTI	ATGAA	3 cut(s)	5, 17, 34
TspGWI	ACGGA	2 cut(s)	266, 712
TspRI	CASTG	2 cut(s)	651, 837
Vha464I	CTTAAG	1 cut(s)	965
VpaK11BI	GGWCC	4 cut(s)	174, 386, 433, 458
XceI	RCATGY	1 cut(s)	739
XhoI	CTCGAG	1 cut(s)	848
XmiI	GTMKAC	1 cut(s)	904
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	3 cut(s)	284, 375, 771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.