AT3G15240
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
N/A
Physical Location & Seq
Forward (+)
5133444 .. 5136032
2589 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15240.2

Sequence Viewer

Length: 1089 bp
ATGGTGGGCTCGGAACATCATCACCATCATCAACAACATCATCATCAAAACCATCAGCAGCAGCAACAAAGGAGCAAAGAAGCTTTAGGGATGGTGGCTCTCCACGACGCCCTGAGAACTGTTTGTCTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCCGAGAGTTCGAGGCGGTGGCAACGGCTGCAAAGTTGGCGACGACAATGGAAGCTTGATGTTGATGTGGGAAGATGGATACTGCAGAGGAAGAGGAGGAACAGAAGGTTGCTATGGAGACATGGAAGGAGAAGATCCTGTTCGTAAATCTTTCAGCAAGATGTCTATTCAGTTATATAATTATGGCGAAGGGTTAATGGGGAAGGTTGCTTCTGACAAATGCCATAAATGGGTTTTCAAGGAACAAACTGAATCTGAATCTAATGCCTCTAGTTACTGGCAAAGCTCATTCGATGCTATTCCTTCAGAGTGGAATGATCAGTTCGAATCTGGGATTCGGACCATAGCTGTTATTCAAGCCGGACATGGCCTTTTACAACTTGGTTCTTGCAAGATTATACCTGAAGATCTGCACTTTGTTCTTCGGATGAGGCACACGTTTGAATCACTTGGCTACCAATCCGGATTTTACCTCTCTCAGCTCTTCTCCTCAAACCGAACCACTTCGTCTTCAAACACACCGCTCATGGCCTCGAACCACCCTCTACTACCTACACAGACTCAGCCATTGCAACCCACTCTTCCCCACTACAACTGGAGTGGTACGAGCCAACGACCAATGATGCCTCAAACCTCTTTGCCTACCTACCAGCCTCACATGACTATGCCTTTCCCAGTAATGCCACACTCAAACAAAGAACAAGACCCTGACGTGAAATGGCCCACGGGCCTATCTTTCTTCAATGCGTTGACTAACAATGTCAACGCTAAGCTTCTGTTTGATTCAGAGGGGTTAGGTGACAAAACAGACCACCAGAACCAGAGCCAGGAACAGAGCAACTCTGAGAGTCAAGCGAATCCGAGCGAGTTCTTGAGCCTTGATAGTCACCACCGAAACATGAGTTTCTTAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

362

Amino Acids

41.0

Weight (kDa)

6.14

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 34 - 90 4.3e-09 bHLH-MYC and R2R3-MYB transcription factors N-terminal
bHLH-MYC_N PF14215 102 - 205 1.2e-17 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 697
AccIII TCCGGA 1 cut(s) 635
AciI CCGC 2 cut(s) 189, 695
AclWI GGATC 1 cut(s) 302
AcuI CTGAAG 2 cut(s) 462, 597
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 778
AfiI CCNNNNNNNGG 2 cut(s) 403, 1000
AflIII ACRYGT 1 cut(s) 609
AgsI TTSAA 5 cut(s) 412, 530, 617, 687, 916
AjiI CACGTC 1 cut(s) 886
AjnI CCWGG 1 cut(s) 999
AluBI AGCT 6 cut(s) 83, 228, 459, 521, 655, 946
AluI AGCT 6 cut(s) 83, 228, 459, 521, 655, 946
Alw26I GTCTC 2 cut(s) 131, 285
AlwI GGATC 1 cut(s) 302
Aor13HI TCCGGA 1 cut(s) 635
AoxI GGCC 4 cut(s) 541, 702, 893, 901
ApeKI GCWGC 3 cut(s) 58, 61, 201
Asp700I GAANNNNTTC 1 cut(s) 676
AspS9I GGNCC 4 cut(s) 159, 513, 894, 901
AsuHPI GGTGA 3 cut(s) 14, 983, 1052
AsuII TTCGAA 1 cut(s) 498
AvaII GGWCC 2 cut(s) 159, 513
BanII GRGCYC 1 cut(s) 11
BbsI GAAGAC 2 cut(s) 145, 675
BbvI GCAGC 3 cut(s) 70, 73, 188
BccI CCATC 5 cut(s) 33, 60, 85, 170, 242
BceAI ACGGC 1 cut(s) 214
BciT130I CCWGG 1 cut(s) 1001
BciVI GTATCC 1 cut(s) 245
BclI TGATCA 1 cut(s) 490
BcoDI GTCTC 2 cut(s) 131, 285
BfaI CTAG 1 cut(s) 444
BfmI CTRYAG 1 cut(s) 256
BfuI GTATCC 1 cut(s) 245
BglII AGATCT 1 cut(s) 580
BisI GCNGC 3 cut(s) 59, 62, 202
BlpI GCTNAGC 1 cut(s) 942
BlsI GCNGC 3 cut(s) 60, 63, 203
Bme1390I CCNGG 1 cut(s) 1001
Bme18I GGWCC 2 cut(s) 159, 513
BmgBI CACGTC 1 cut(s) 886
BmgT120I GGNCC 4 cut(s) 159, 513, 894, 901
BmrFI CCNGG 1 cut(s) 1001
BmrI ACTGGG 1 cut(s) 842
BmsI GCATC 2 cut(s) 457, 786
BmuI ACTGGG 1 cut(s) 842
BpiI GAAGAC 2 cut(s) 145, 675
BpmI CTGGAG 1 cut(s) 790
Bpu1102I GCTNAGC 1 cut(s) 942
Bpu14I TTCGAA 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 1066
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 897
BsaWI WCCGGW 1 cut(s) 635
Bsc4I CCNNNNNNNGG 2 cut(s) 403, 1000
Bse1I ACTGG 4 cut(s) 143, 455, 773, 848
Bse3DI GCAATG 1 cut(s) 740
BseAI TCCGGA 1 cut(s) 635
BseBI CCWGG 1 cut(s) 1001
BseDI CCNNGG 1 cut(s) 897
BseGI GGATG 3 cut(s) 96, 162, 606
BseLI CCNNNNNNNGG 2 cut(s) 403, 1000
BseMI GCAATG 1 cut(s) 740
BseMII CTCAG 4 cut(s) 104, 665, 749, 1008
BseNI ACTGG 4 cut(s) 143, 455, 773, 848
BseRI GAGGAG 2 cut(s) 282, 652
BseXI GCAGC 3 cut(s) 70, 73, 188
BsgI GTGCAG 1 cut(s) 569
BshFI GGCC 4 cut(s) 543, 704, 895, 903
BsiSI CCGG 2 cut(s) 534, 636
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 2 cut(s) 403, 1000
BsmAI GTCTC 2 cut(s) 131, 285
BsmFI GGGAC 1 cut(s) 153
BsnI GGCC 4 cut(s) 543, 704, 895, 903
Bsp119I TTCGAA 1 cut(s) 498
Bsp1286I GDGCHC 1 cut(s) 11
Bsp13I TCCGGA 1 cut(s) 635
Bsp143I GATC 3 cut(s) 307, 490, 580
Bsp1720I GCTNAGC 1 cut(s) 942
BspACI CCGC 2 cut(s) 189, 695
BspANI GGCC 4 cut(s) 543, 704, 895, 903
BspCNI CTCAG 4 cut(s) 105, 664, 748, 1009
BspEI TCCGGA 1 cut(s) 635
BspMAI CTGCAG 1 cut(s) 260
BspPI GGATC 1 cut(s) 302
BspQI GCTCTTC 1 cut(s) 662
BspT104I TTCGAA 1 cut(s) 498
BsrBI CCGCTC 1 cut(s) 697
BsrDI GCAATG 1 cut(s) 740
BsrI ACTGG 4 cut(s) 143, 455, 773, 848
BssECI CCNNGG 1 cut(s) 897
BssMI GATC 3 cut(s) 307, 490, 580
BssNI GRCGYC 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 1001
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 3 cut(s) 259, 662, 759
BstACI GRCGYC 1 cut(s) 108
BstAPI GCANNNNNTGC 1 cut(s) 201
BstBI TTCGAA 1 cut(s) 498
BstDEI CTNAG 6 cut(s) 113, 651, 735, 942, 1017, 1081
BstDSI CCRYGG 1 cut(s) 897
BstF5I GGATG 3 cut(s) 96, 162, 606
BstKTI GATC 3 cut(s) 310, 493, 583
BstMAI GTCTC 2 cut(s) 131, 285
BstMBI GATC 3 cut(s) 307, 490, 580
BstMWI GCNNNNNNNGC 2 cut(s) 201, 210
BstNI CCWGG 1 cut(s) 1001
BstSCI CCNGG 1 cut(s) 999
BstSFI CTRYAG 1 cut(s) 256
BstV1I GCAGC 3 cut(s) 70, 73, 188
BstV2I GAAGAC 2 cut(s) 145, 675
BstX2I RGATCY 2 cut(s) 307, 580
BstYI RGATCY 2 cut(s) 307, 580
BsuI GTATCC 1 cut(s) 245
BsuRI GGCC 4 cut(s) 543, 704, 895, 903
BtgI CCRYGG 1 cut(s) 897
BtrI CACGTC 1 cut(s) 886
BtsCI GGATG 3 cut(s) 96, 162, 606
Cfr13I GGNCC 4 cut(s) 159, 513, 894, 901
CseI GACGC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 777
CspCI CAANNNNNGTGG 2 cut(s) 754, 789
CviAII CATG 5 cut(s) 295, 539, 700, 832, 1072
CviQI GTAC 1 cut(s) 777
DdeI CTNAG 6 cut(s) 113, 651, 735, 942, 1017, 1081
DpnI GATC 3 cut(s) 309, 492, 582
DpnII GATC 3 cut(s) 307, 490, 580
Eam1104I CTCTTC 3 cut(s) 259, 662, 759
EarI CTCTTC 3 cut(s) 259, 662, 759
Eco24I GRGCYC 1 cut(s) 11
Eco47I GGWCC 2 cut(s) 159, 513
Eco57I CTGAAG 2 cut(s) 462, 597
EcoRII CCWGG 1 cut(s) 999
EcoT38I GRGCYC 1 cut(s) 11
FaeI CATG 5 cut(s) 298, 542, 703, 835, 1075
FaqI GGGAC 1 cut(s) 153
FatI CATG 5 cut(s) 294, 538, 699, 831, 1071
FbaI TGATCA 1 cut(s) 490
Fnu4HI GCNGC 3 cut(s) 59, 62, 202
FokI GGATG 3 cut(s) 103, 149, 613
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 3 cut(s) 59, 62, 202
FspBI CTAG 1 cut(s) 444
GluI GCNGC 3 cut(s) 59, 62, 202
GsuI CTGGAG 1 cut(s) 790
HaeIII GGCC 4 cut(s) 543, 704, 895, 903
HapII CCGG 2 cut(s) 534, 636
HgaI GACGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 5 cut(s) 298, 542, 703, 835, 1075
HincII GTYRAC 2 cut(s) 924, 937
HindII GTYRAC 2 cut(s) 924, 937
HindIII AAGCTT 3 cut(s) 81, 226, 944
HinfI GANTC 9 cut(s) 425, 431, 500, 508, 617, 733, 956, 1021, 1030
HpaII CCGG 2 cut(s) 534, 636
HphI GGTGA 3 cut(s) 14, 983, 1052
Hpy166II GTNNAC 2 cut(s) 924, 937
Hpy188III TCNNGA 2 cut(s) 636, 1045
Hpy8I GTNNAC 2 cut(s) 924, 937
Hpy99I CGWCG 2 cut(s) 110, 218
HpyAV CCTTC 5 cut(s) 272, 293, 356, 370, 486
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 2 cut(s) 611, 885
HpyCH4V TGCA 5 cut(s) 204, 258, 564, 586, 745
HpyF10VI GCNNNNNNNGC 2 cut(s) 201, 210
HpyF3I CTNAG 6 cut(s) 113, 651, 735, 942, 1017, 1081
HpySE526I ACGT 2 cut(s) 611, 885
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 5 cut(s) 298, 542, 703, 835, 1075
Kpn2I TCCGGA 1 cut(s) 635
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 3 cut(s) 307, 490, 580
LguI GCTCTTC 1 cut(s) 662
LmnI GCTCC 1 cut(s) 72
Lsp1109I GCAGC 3 cut(s) 70, 73, 188
LweI GCATC 2 cut(s) 457, 786
MaeI CTAG 1 cut(s) 444
MaeII ACGT 2 cut(s) 611, 885
MaeIII GTNAC 3 cut(s) 446, 971, 1058
MalI GATC 3 cut(s) 309, 492, 582
MbiI CCGCTC 1 cut(s) 697
MboI GATC 3 cut(s) 307, 490, 580
MflI RGATCY 2 cut(s) 307, 580
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 1 cut(s) 352
MlyI GAGTC 2 cut(s) 727, 1030
MroI TCCGGA 1 cut(s) 635
MroXI GAANNNNTTC 1 cut(s) 676
MseI TTAA 1 cut(s) 368
MslI CAYNNNNRTG 1 cut(s) 836
MspI CCGG 2 cut(s) 534, 636
MspR9I CCNGG 1 cut(s) 1001
MvaI CCWGG 1 cut(s) 1001
MwoI GCNNNNNNNGC 2 cut(s) 201, 210
NdeII GATC 3 cut(s) 307, 490, 580
NlaIII CATG 5 cut(s) 298, 542, 703, 835, 1075
NmuCI GTSAC 2 cut(s) 971, 1058
NspV TTCGAA 1 cut(s) 498
PciSI GCTCTTC 1 cut(s) 662
PdmI GAANNNNTTC 1 cut(s) 676
PfeI GAWTC 7 cut(s) 425, 431, 500, 508, 617, 956, 1030
PkrI GCNGC 3 cut(s) 60, 63, 203
PleI GAGTC 2 cut(s) 727, 1029
PpsI GAGTC 2 cut(s) 727, 1029
Psp6I CCWGG 1 cut(s) 999
PspGI CCWGG 1 cut(s) 999
PspPI GGNCC 4 cut(s) 159, 513, 894, 901
PstI CTGCAG 1 cut(s) 260
PsuI RGATCY 2 cut(s) 307, 580
RsaI GTAC 1 cut(s) 778
RsaNI GTAC 1 cut(s) 777
RseI CAYNNNNRTG 1 cut(s) 836
SapI GCTCTTC 1 cut(s) 662
SaqAI TTAA 1 cut(s) 368
SatI GCNGC 3 cut(s) 59, 62, 202
Sau3AI GATC 3 cut(s) 307, 490, 580
Sau96I GGNCC 4 cut(s) 159, 513, 894, 901
SchI GAGTC 2 cut(s) 727, 1030
ScrFI CCNGG 1 cut(s) 1001
SduI GDGCHC 1 cut(s) 11
SfaNI GCATC 2 cut(s) 457, 786
SfcI CTRYAG 1 cut(s) 256
SfuI TTCGAA 1 cut(s) 498
SinI GGWCC 2 cut(s) 159, 513
SmiMI CAYNNNNRTG 1 cut(s) 836
SmlI CTYRAG 1 cut(s) 1045
SmoI CTYRAG 1 cut(s) 1045
Sse9I AATT 1 cut(s) 352
SsiI CCGC 2 cut(s) 189, 695
SspMI CTAG 1 cut(s) 444
StyD4I CCNGG 1 cut(s) 999
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 2 cut(s) 614, 888
TaqI TCGA 4 cut(s) 184, 465, 498, 707
TasI AATT 1 cut(s) 352
TfiI GAWTC 7 cut(s) 425, 431, 500, 508, 617, 956, 1030
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TseFI GTSAC 2 cut(s) 971, 1058
TseI GCWGC 3 cut(s) 58, 61, 201
Tsp45I GTSAC 2 cut(s) 971, 1058
TspGWI ACGGA 1 cut(s) 155
VpaK11BI GGWCC 2 cut(s) 159, 513
XmnI GAANNNNTTC 1 cut(s) 676
XspI CTAG 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.