Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5354874 .. 5356426

Gene Structure 1553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTCAGACGCCGTAACCAAAACCGTCGCCCCTCTCCGTCGTAAAGCTAATCCTATTAACGGAAAACACACTAACGGCGTCACCATCGACGGAATCTTCGACGACCACAATCGCCAAATAGGACCAATAAATAGCCAAATGGAAGATATTGCTCAGAAAACTGATGACGGTGGAGGAGGAGAATGGACAAGCAAAGCGTCGTTTATGACGTGGACGATGCATGACATAATTTACGTGGCGAGACACCATTGGATACCGTGTTTATTCGCGGCCGGAGTTATGTTTTTTACGGTTGTGGAGTACACGTTCCAGATGACTCCTGCGAGTTCTCAGCCGTTTGATCTAGGATTTGTGGCCACACGTTATCTGCATAGCATCTTGGCATCTTCACCCAATCTTAACACCGTTTTAGCCGCTTTAAACACGATTTTGGTAGGGATGCAAACAACGTATATTGGATGTACATGGGCAGTGGAAGGACGACCACGGGCAACCATCGCGGCTTTATTCATGTTCACTTGTCGTGGCATTCTCGGCTACTCTACTCAGCTCCCTCGCCCTCAGGAATTTTTAGGATCAGGAGTAGATTATCCGGTCGGAAACGTGTCGTTCTTCCTCTTCTACTCAGGTCACGTCGCCGGATCGATGATCGCATCGTTGGACATGAAGAGAATGCAGAGGTTTAGGCTGGCGATGGTTTTTGACATTCTCAATGTATTGCAATCCATCAGGCTGCTTGGTACGAGAGGACACTACACGATTGATATTGCGGTTGGAGTTGGCGCTGGGATTCTCTTTGACTCATTGGCCGGGAAGTACGAAGAGATGAGCAAGAGACATTTACGGAATACTCGTTGTAGTTTGATTTCAAAAGACTCTCTAGTCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004142 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP2_3 PAP2_C

Protein Analysis

296

Amino Acids

32.69

Weight (kDa)

8.88

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AtPDCT1_2	PF24788	113 - 272	4.5e-87	AtPDCT1/2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	881
AccII	CGCG	2 cut(s)	269, 500
AciI	CCGC	4 cut(s)	269, 414, 500, 770
AclWI	GGATC	2 cut(s)	583, 649
AcoI	YGGCCR	3 cut(s)	270, 354, 807
AcsI	RAATTY	1 cut(s)	566
AcyI	GRCGYC	2 cut(s)	9, 78
AfaI	GTAC	4 cut(s)	302, 463, 742, 818
AfiI	CCNNNNNNNGG	1 cut(s)	59
AflIII	ACRYGT	3 cut(s)	303, 359, 603
AgsI	TTSAA	1 cut(s)	870
AjiI	CACGTC	2 cut(s)	210, 634
AloI	GAACNNNNNNTCC	2 cut(s)	290, 322
AluBI	AGCT	2 cut(s)	47, 550
AluI	AGCT	2 cut(s)	47, 550
Alw26I	GTCTC	2 cut(s)	235, 829
AlwI	GGATC	2 cut(s)	583, 649
AoxI	GGCC	3 cut(s)	270, 354, 807
ApeKI	GCWGC	1 cut(s)	733
ApoI	RAATTY	1 cut(s)	566
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AspLEI	GCGC	1 cut(s)	785
AspS9I	GGNCC	1 cut(s)	122
AsuC2I	CCSGG	1 cut(s)	811
AsuHPI	GGTGA	2 cut(s)	73, 381
AvaII	GGWCC	1 cut(s)	122
AxyI	CCTNAGG	1 cut(s)	561
BalI	TGGCCA	1 cut(s)	356
BbvI	GCAGC	1 cut(s)	720
BccI	CCATC	4 cut(s)	92, 503, 688, 734
BceAI	ACGGC	2 cut(s)	91, 319
BciVI	GTATCC	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	811
BcoDI	GTCTC	2 cut(s)	235, 829
BfaI	CTAG	2 cut(s)	344, 881
BfoI	RGCGCY	1 cut(s)	786
BfuI	GTATCC	1 cut(s)	246
BisI	GCNGC	4 cut(s)	270, 414, 501, 734
BlsI	GCNGC	4 cut(s)	271, 415, 502, 735
Bme1390I	CCNGG	1 cut(s)	811
Bme18I	GGWCC	1 cut(s)	122
BmgBI	CACGTC	2 cut(s)	210, 634
BmgT120I	GGNCC	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	811
BmsI	GCATC	5 cut(s)	207, 384, 392, 429, 662
BpuMI	CCSGG	1 cut(s)	811
Bsa29I	ATCGAT	1 cut(s)	644
BsaAI	YACGTR	1 cut(s)	235
BsaHI	GRCGYC	2 cut(s)	9, 78
BsaJI	CCNNGG	1 cut(s)	485
BsaWI	WCCGGW	1 cut(s)	592
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse21I	CCTNAGG	1 cut(s)	561
BseCI	ATCGAT	1 cut(s)	644
BseDI	CCNNGG	1 cut(s)	485
BseGI	GGATG	2 cut(s)	444, 464
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	5 cut(s)	167, 344, 560, 575, 639
BseRI	GAGGAG	2 cut(s)	189, 192
BseX3I	CGGCCG	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	720
BseYI	CCCAGC	1 cut(s)	785
Bsh1236I	CGCG	2 cut(s)	269, 500
Bsh1285I	CGRYCG	2 cut(s)	273, 597
BshFI	GGCC	3 cut(s)	272, 356, 809
BshVI	ATCGAT	1 cut(s)	644
BsiEI	CGRYCG	2 cut(s)	273, 597
BsiSI	CCGG	4 cut(s)	273, 593, 639, 810
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	2 cut(s)	235, 829
BsmI	GAATGC	2 cut(s)	528, 678
BsnI	GGCC	3 cut(s)	272, 356, 809
Bsp1407I	TGTACA	1 cut(s)	461
Bsp143I	GATC	4 cut(s)	340, 575, 641, 648
BspACI	CCGC	4 cut(s)	269, 414, 500, 770
BspANI	GGCC	3 cut(s)	272, 356, 809
BspCNI	CTCAG	5 cut(s)	166, 343, 559, 574, 638
BspDI	ATCGAT	1 cut(s)	644
BspFNI	CGCG	2 cut(s)	269, 500
BspPI	GGATC	2 cut(s)	583, 649
BsrGI	TGTACA	1 cut(s)	461
BssECI	CCNNGG	1 cut(s)	485
BssMI	GATC	4 cut(s)	340, 575, 641, 648
BssNI	GRCGYC	2 cut(s)	9, 78
Bst4CI	ACNGT	5 cut(s)	25, 170, 258, 292, 406
Bst6I	CTCTTC	3 cut(s)	623, 662, 816
BstACI	GRCGYC	2 cut(s)	9, 78
BstAUI	TGTACA	1 cut(s)	461
BstBAI	YACGTR	1 cut(s)	235
BstC8I	GCNNGC	1 cut(s)	690
BstDEI	CTNAG	5 cut(s)	153, 330, 546, 561, 625
BstDSI	CCRYGG	1 cut(s)	485
BstF5I	GGATG	2 cut(s)	444, 464
BstFNI	CGCG	2 cut(s)	269, 500
BstH2I	RGCGCY	1 cut(s)	786
BstHHI	GCGC	1 cut(s)	785
BstKTI	GATC	4 cut(s)	343, 578, 644, 651
BstMAI	GTCTC	2 cut(s)	235, 829
BstMBI	GATC	4 cut(s)	340, 575, 641, 648
BstMCI	CGRYCG	2 cut(s)	273, 597
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 534
BstSCI	CCNGG	1 cut(s)	809
BstUI	CGCG	2 cut(s)	269, 500
BstV1I	GCAGC	1 cut(s)	720
BstZI	CGGCCG	1 cut(s)	270
Bsu15I	ATCGAT	1 cut(s)	644
Bsu36I	CCTNAGG	1 cut(s)	561
BsuI	GTATCC	1 cut(s)	246
BsuRI	GGCC	3 cut(s)	272, 356, 809
BsuTUI	ATCGAT	1 cut(s)	644
BtgI	CCRYGG	1 cut(s)	485
BtgZI	GCGATG	2 cut(s)	481, 707
BtrI	CACGTC	2 cut(s)	210, 634
BtsCI	GGATG	2 cut(s)	444, 464
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	1 cut(s)	690
CfoI	GCGC	1 cut(s)	785
Cfr13I	GGNCC	1 cut(s)	122
ClaI	ATCGAT	1 cut(s)	644
CseI	GACGC	3 cut(s)	17, 67, 186
Csp6I	GTAC	4 cut(s)	301, 462, 741, 817
CviAII	CATG	4 cut(s)	221, 465, 511, 664
CviQI	GTAC	4 cut(s)	301, 462, 741, 817
DdeI	CTNAG	5 cut(s)	153, 330, 546, 561, 625
DpnI	GATC	4 cut(s)	342, 577, 643, 650
DpnII	GATC	4 cut(s)	340, 575, 641, 648
DraI	TTTAAA	1 cut(s)	420
DrdI	GACNNNNNNGTC	1 cut(s)	881
DseDI	GACNNNNNNGTC	1 cut(s)	881
EaeI	YGGCCR	3 cut(s)	270, 354, 807
EagI	CGGCCG	1 cut(s)	270
Eam1104I	CTCTTC	3 cut(s)	623, 662, 816
EarI	CTCTTC	3 cut(s)	623, 662, 816
EclXI	CGGCCG	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	122
Eco52I	CGGCCG	1 cut(s)	270
Eco81I	CCTNAGG	1 cut(s)	561
EcoT22I	ATGCAT	1 cut(s)	222
FaeI	CATG	4 cut(s)	224, 468, 514, 667
FaiI	YATR	9 cut(s)	206, 222, 227, 281, 372, 453, 466, 512, 665
FatI	CATG	4 cut(s)	220, 464, 510, 663
Fnu4HI	GCNGC	4 cut(s)	270, 414, 501, 734
FokI	GGATG	2 cut(s)	451, 471
Fsp4HI	GCNGC	4 cut(s)	270, 414, 501, 734
FspBI	CTAG	2 cut(s)	344, 881
GlaI	GCGC	1 cut(s)	784
GluI	GCNGC	4 cut(s)	270, 414, 501, 734
GsaI	CCCAGC	1 cut(s)	789
HaeII	RGCGCY	1 cut(s)	786
HaeIII	GGCC	3 cut(s)	272, 356, 809
HapII	CCGG	4 cut(s)	273, 593, 639, 810
HgaI	GACGC	3 cut(s)	17, 67, 186
HhaI	GCGC	1 cut(s)	785
Hin1I	GRCGYC	2 cut(s)	9, 78
Hin1II	CATG	4 cut(s)	224, 468, 514, 667
Hin6I	GCGC	1 cut(s)	783
HinP1I	GCGC	1 cut(s)	783
HinfI	GANTC	5 cut(s)	93, 316, 790, 800, 875
HpaII	CCGG	4 cut(s)	273, 593, 639, 810
HphI	GGTGA	2 cut(s)	73, 381
Hpy166II	GTNNAC	3 cut(s)	213, 303, 516
Hpy188I	TCNGA	3 cut(s)	7, 156, 599
Hpy188III	TCNNGA	3 cut(s)	310, 563, 579
Hpy8I	GTNNAC	3 cut(s)	213, 303, 516
Hpy99I	CGWCG	6 cut(s)	29, 42, 92, 104, 202, 638
HpyAV	CCTTC	1 cut(s)	470
HpyCH4III	ACNGT	5 cut(s)	25, 170, 258, 292, 406
HpyCH4IV	ACGT	7 cut(s)	209, 234, 305, 361, 449, 603, 633
HpyCH4V	TGCA	5 cut(s)	220, 370, 442, 676, 721
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 534
HpyF3I	CTNAG	5 cut(s)	153, 330, 546, 561, 625
HpySE526I	ACGT	7 cut(s)	209, 234, 305, 361, 449, 603, 633
Hsp92I	GRCGYC	2 cut(s)	9, 78
Hsp92II	CATG	4 cut(s)	224, 468, 514, 667
HspAI	GCGC	1 cut(s)	783
Kzo9I	GATC	4 cut(s)	340, 575, 641, 648
LmnI	GCTCC	1 cut(s)	555
Lsp1109I	GCAGC	1 cut(s)	720
LweI	GCATC	5 cut(s)	207, 384, 392, 429, 662
MaeI	CTAG	2 cut(s)	344, 881
MaeII	ACGT	7 cut(s)	209, 234, 305, 361, 449, 603, 633
MaeIII	GTNAC	4 cut(s)	13, 79, 629, 883
MalI	GATC	4 cut(s)	342, 577, 643, 650
MboI	GATC	4 cut(s)	340, 575, 641, 648
MboII	GAAGA	7 cut(s)	88, 155, 378, 604, 610, 679, 833
MlsI	TGGCCA	1 cut(s)	356
MluCI	AATT	2 cut(s)	228, 566
MluNI	TGGCCA	1 cut(s)	356
MlyI	GAGTC	3 cut(s)	310, 794, 869
MmeI	TCCRAC	3 cut(s)	577, 639, 754
MnlI	CCTC	8 cut(s)	42, 167, 170, 564, 570, 626, 672, 740
Mox20I	TGGCCA	1 cut(s)	356
Mph1103I	ATGCAT	1 cut(s)	222
MscI	TGGCCA	1 cut(s)	356
MseI	TTAA	4 cut(s)	57, 399, 419, 889
Msp20I	TGGCCA	1 cut(s)	356
MspI	CCGG	4 cut(s)	273, 593, 639, 810
MspR9I	CCNGG	1 cut(s)	811
Mva1269I	GAATGC	2 cut(s)	528, 678
MvnI	CGCG	2 cut(s)	269, 500
MwoI	GCNNNNNNNGC	2 cut(s)	497, 534
NciI	CCSGG	1 cut(s)	811
NdeII	GATC	4 cut(s)	340, 575, 641, 648
NlaIII	CATG	4 cut(s)	224, 468, 514, 667
NmeAIII	GCCGAG	1 cut(s)	513
NmuCI	GTSAC	3 cut(s)	79, 629, 883
NsiI	ATGCAT	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	3 cut(s)	96, 206, 850
PctI	GAATGC	2 cut(s)	528, 678
PfeI	GAWTC	2 cut(s)	93, 790
PkrI	GCNGC	4 cut(s)	271, 415, 502, 735
PleI	GAGTC	3 cut(s)	310, 794, 869
PpsI	GAGTC	3 cut(s)	310, 794, 869
Ppu21I	YACGTR	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	785
PspPI	GGNCC	1 cut(s)	122
RsaI	GTAC	4 cut(s)	302, 463, 742, 818
RsaNI	GTAC	4 cut(s)	301, 462, 741, 817
SaqAI	TTAA	4 cut(s)	57, 399, 419, 889
SatI	GCNGC	4 cut(s)	270, 414, 501, 734
Sau3AI	GATC	4 cut(s)	340, 575, 641, 648
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	3 cut(s)	310, 794, 869
ScrFI	CCNGG	1 cut(s)	811
SfaNI	GCATC	5 cut(s)	207, 384, 392, 429, 662
SinI	GGWCC	1 cut(s)	122
Sse9I	AATT	2 cut(s)	228, 566
SsiI	CCGC	4 cut(s)	269, 414, 500, 770
SspMI	CTAG	2 cut(s)	344, 881
StyD4I	CCNGG	1 cut(s)	809
TaaI	ACNGT	5 cut(s)	25, 170, 258, 292, 406
TaiI	ACGT	7 cut(s)	212, 237, 308, 364, 452, 606, 636
TaqI	TCGA	3 cut(s)	87, 99, 644
TasI	AATT	2 cut(s)	228, 566
TatI	WGTACW	2 cut(s)	300, 461
TauI	GCSGC	3 cut(s)	272, 416, 503
TfiI	GAWTC	2 cut(s)	93, 790
Tru1I	TTAA	4 cut(s)	57, 399, 419, 889
Tru9I	TTAA	4 cut(s)	57, 399, 419, 889
TscAI	CASTG	1 cut(s)	477
TseFI	GTSAC	3 cut(s)	79, 629, 883
TseI	GCWGC	1 cut(s)	733
Tsp45I	GTSAC	3 cut(s)	79, 629, 883
TspDTI	ATGAA	2 cut(s)	499, 680
TspGWI	ACGGA	4 cut(s)	26, 75, 105, 859
TspRI	CASTG	1 cut(s)	477
VpaK11BI	GGWCC	1 cut(s)	122
XapI	RAATTY	1 cut(s)	566
XspI	CTAG	2 cut(s)	344, 881
Zsp2I	ATGCAT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.