Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5374248 .. 5376275

Gene Structure 2028 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGCAACTTTTAAATAGCTGTTGTGGAAAAGGATTTGATGGGAAGAAGAAAGAAAAGGAAGAGCCATCTTGGAGGGTATTTTCACTGAAGGAACTTCATGCAGCCACCAACAGTTTCAATTACGATAACAAACTCGGTGAAGGTCGATTTGGTAGTGTCTATTGGGGTCAGCTATGGGATGGCTCACAAATTGCAGTCAAGAGGTTGAAGGAATGGAGTAATAGAGAAGAGATAGATTTTGCTGTGGAAGTCGAGATTCTTGCTCGTATTCGTCACAAGAATTTGTTGAGTGTTCGTGGCTACTGTGCTGAAGGACAAGAACGTCTTCTTGTGTACGAGTACATGCAGAATTTGAGCTTGGTTTCACATCTTCATGGCCAGCATTCAGCTGAATGTCTTCTAGATTGGACCAAGCGAATGAAGATCGCCATAAGCTCTGCTCAGGCCATTGCCTACCTACACGACCACGCAACCCCACATATAGTCCATGGAGATGTGAGAGCTAGCAATGTGTTGTTAGACTCTGAATTTGAAGCTCGCGTTACAGATTTTGGTTATGGTAAGCTGATGCCAGATGATGATACTGGAGATGGAGCTACCAAAGCCAAAAGTAATAATGGATATATCTCACCAGAATGTGATGCATCAGGAAAAGAATCAGAAACTAGCGATGTGTACAGTTTTGGTATCCTTTTGATGGTACTGGTTAGTGGCAAGAGACCACTCGAGAGGCTAAATCCAACAACAACGCGGTGTATAACAGAGTGGGTTTTACCACTTGTTTATGAAAGAAATTTTGGTGAAATCGTTGATAAGAGGCTGAGCGAGGAGCATGTGGCAGAGAAACTGAAGAAAGTAGTCTTGGTGGGGCTTATGTGTGCTCAGACAGATCCAGACAAGAGACCAACAATGTCTGAAGTGGTGGAGATGCTGGTGAATGAATCAAAGGAGAAAATATCTGAACTTGAAGCTAATCCCCTCTTCAAGAATCCATATAGCAGCAACGAAAACAATAGAGAGCATGTTGCAGAGGAAAGCTCAGATGTGATCTTAGAAGATAAAGATCATCAACAACAACAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

361

Amino Acids

40.95

Weight (kDa)

5.36

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	40 - 309	1.4e-37	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	41 - 311	5.7e-43	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	321
AccII	CGCG	2 cut(s)	540, 751
AciI	CCGC	1 cut(s)	751
AclWI	GGATC	1 cut(s)	884
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	4 cut(s)	280, 349, 527, 793
AcuI	CTGAAG	4 cut(s)	107, 330, 869, 936
AfaI	GTAC	4 cut(s)	335, 341, 677, 702
AfiI	CCNNNNNNNGG	1 cut(s)	697
AgsI	TTSAA	5 cut(s)	118, 208, 533, 968, 985
AjuI	GAANNNNNNNTTGG	8 cut(s)	132, 164, 341, 373, 780, 812, 845, 877
Alw21I	GWGCWC	1 cut(s)	883
Alw26I	GTCTC	2 cut(s)	712, 895
AlwI	GGATC	1 cut(s)	884
Ama87I	CYCGRG	1 cut(s)	725
AoxI	GGCC	2 cut(s)	376, 444
ApeKI	GCWGC	2 cut(s)	101, 999
ApoI	RAATTY	4 cut(s)	280, 349, 527, 793
ArsI	GACNNNNNNTTYG	2 cut(s)	512, 544
Asp700I	GAANNNNTTC	2 cut(s)	324, 396
AspS9I	GGNCC	1 cut(s)	408
AsuHPI	GGTGA	4 cut(s)	149, 621, 812, 946
AsuNHI	GCTAGC	1 cut(s)	503
AvaI	CYCGRG	1 cut(s)	725
AvaII	GGWCC	1 cut(s)	408
BalI	TGGCCA	1 cut(s)	378
BbsI	GAAGAC	2 cut(s)	317, 389
Bbv12I	GWGCWC	1 cut(s)	883
BbvI	GCAGC	2 cut(s)	113, 1011
BccI	CCATC	5 cut(s)	32, 73, 173, 584, 691
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciVI	GTATCC	1 cut(s)	698
BcoDI	GTCTC	2 cut(s)	712, 895
BfaI	CTAG	3 cut(s)	401, 504, 666
BfuI	GTATCC	1 cut(s)	698
BisI	GCNGC	2 cut(s)	102, 1000
BlpI	GCTNAGC	1 cut(s)	821
BlsI	GCNGC	2 cut(s)	103, 1001
Bme18I	GGWCC	1 cut(s)	408
BmeT110I	CYCGRG	1 cut(s)	725
BmgT120I	GGNCC	1 cut(s)	408
BmsI	GCATC	4 cut(s)	558, 631, 653, 918
BmtI	GCTAGC	1 cut(s)	507
BpiI	GAAGAC	2 cut(s)	317, 389
BplI	GAGNNNNNCTC	2 cut(s)	1022, 1054
BpmI	CTGGAG	1 cut(s)	606
Bpu10I	CCTNAGC	1 cut(s)	441
Bpu1102I	GCTNAGC	1 cut(s)	821
BsaBI	GATNNNNATC	1 cut(s)	1062
BsaI	GGTCTC	2 cut(s)	712, 895
BsaJI	CCNNGG	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	1 cut(s)	697
Bse1I	ACTGG	2 cut(s)	589, 708
Bse3DI	GCAATG	2 cut(s)	447, 514
Bse8I	GATNNNNATC	1 cut(s)	1062
BseDI	CCNNGG	1 cut(s)	487
BseGI	GGATG	1 cut(s)	184
BseJI	GATNNNNATC	1 cut(s)	1062
BseLI	CCNNNNNNNGG	1 cut(s)	697
BseMI	GCAATG	2 cut(s)	447, 514
BseMII	CTCAG	4 cut(s)	455, 812, 896, 1053
BseNI	ACTGG	2 cut(s)	589, 708
BseRI	GAGGAG	1 cut(s)	842
BseXI	GCAGC	2 cut(s)	113, 1011
Bsh1236I	CGCG	2 cut(s)	540, 751
BshFI	GGCC	2 cut(s)	378, 446
BsiHKAI	GWGCWC	1 cut(s)	883
BsiHKCI	CYCGRG	1 cut(s)	725
BslI	CCNNNNNNNGG	1 cut(s)	697
BsmAI	GTCTC	2 cut(s)	712, 895
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	378, 446
Bso31I	GGTCTC	2 cut(s)	712, 895
BsoBI	CYCGRG	1 cut(s)	725
Bsp1286I	GDGCHC	1 cut(s)	883
Bsp1407I	TGTACA	1 cut(s)	675
Bsp143I	GATC	4 cut(s)	423, 889, 1047, 1063
Bsp1720I	GCTNAGC	1 cut(s)	821
Bsp19I	CCATGG	1 cut(s)	487
BspACI	CCGC	1 cut(s)	751
BspANI	GGCC	2 cut(s)	378, 446
BspCNI	CTCAG	4 cut(s)	454, 813, 895, 1052
BspFNI	CGCG	2 cut(s)	540, 751
BspOI	GCTAGC	1 cut(s)	507
BspPI	GGATC	1 cut(s)	884
BspQI	GCTCTTC	1 cut(s)	54
BspTNI	GGTCTC	2 cut(s)	712, 895
BsrDI	GCAATG	2 cut(s)	447, 514
BsrGI	TGTACA	1 cut(s)	675
BsrI	ACTGG	2 cut(s)	589, 708
BssECI	CCNNGG	1 cut(s)	487
BssMI	GATC	4 cut(s)	423, 889, 1047, 1063
BssT1I	CCWWGG	1 cut(s)	487
Bst4CI	ACNGT	3 cut(s)	113, 305, 680
Bst6I	CTCTTC	3 cut(s)	54, 222, 986
BstAUI	TGTACA	1 cut(s)	675
BstC8I	GCNNGC	3 cut(s)	380, 505, 538
BstDEI	CTNAG	5 cut(s)	441, 821, 882, 1039, 1051
BstDSI	CCRYGG	1 cut(s)	487
BstF5I	GGATG	1 cut(s)	184
BstFNI	CGCG	2 cut(s)	540, 751
BstKTI	GATC	4 cut(s)	426, 892, 1050, 1066
BstMAI	GTCTC	2 cut(s)	712, 895
BstMBI	GATC	4 cut(s)	423, 889, 1047, 1063
BstMWI	GCNNNNNNNGC	1 cut(s)	602
BstNSI	RCATGY	3 cut(s)	346, 836, 1025
BstUI	CGCG	2 cut(s)	540, 751
BstV1I	GCAGC	2 cut(s)	113, 1011
BstV2I	GAAGAC	2 cut(s)	317, 389
BstX2I	RGATCY	1 cut(s)	889
BstYI	RGATCY	1 cut(s)	889
BsuI	GTATCC	1 cut(s)	698
BsuRI	GGCC	2 cut(s)	378, 446
BtgI	CCRYGG	1 cut(s)	487
BtgZI	GCGATG	1 cut(s)	684
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	83
Cac8I	GCNNGC	3 cut(s)	380, 505, 538
Cfr13I	GGNCC	1 cut(s)	408
Csp6I	GTAC	4 cut(s)	334, 340, 676, 701
CviAII	CATG	6 cut(s)	98, 343, 374, 488, 833, 1022
CviQI	GTAC	4 cut(s)	334, 340, 676, 701
DdeI	CTNAG	5 cut(s)	441, 821, 882, 1039, 1051
DpnI	GATC	4 cut(s)	425, 891, 1049, 1065
DpnII	GATC	4 cut(s)	423, 889, 1047, 1063
DraI	TTTAAA	1 cut(s)	12
DrdI	GACNNNNNNGTC	1 cut(s)	321
DseDI	GACNNNNNNGTC	1 cut(s)	321
EaeI	YGGCCR	1 cut(s)	376
Eam1104I	CTCTTC	3 cut(s)	54, 222, 986
EarI	CTCTTC	3 cut(s)	54, 222, 986
Eco130I	CCWWGG	1 cut(s)	487
Eco31I	GGTCTC	2 cut(s)	712, 895
Eco47I	GGWCC	1 cut(s)	408
Eco57I	CTGAAG	4 cut(s)	107, 330, 869, 936
Eco88I	CYCGRG	1 cut(s)	725
EcoT14I	CCWWGG	1 cut(s)	487
EcoT22I	ATGCAT	1 cut(s)	646
ErhI	CCWWGG	1 cut(s)	487
FaeI	CATG	6 cut(s)	101, 346, 377, 491, 836, 1025
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FatI	CATG	6 cut(s)	97, 342, 373, 487, 832, 1021
Fnu4HI	GCNGC	2 cut(s)	102, 1000
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	2 cut(s)	102, 1000
FspBI	CTAG	3 cut(s)	401, 504, 666
GluI	GCNGC	2 cut(s)	102, 1000
GsuI	CTGGAG	1 cut(s)	606
HaeIII	GGCC	2 cut(s)	378, 446
Hin1II	CATG	6 cut(s)	101, 346, 377, 491, 836, 1025
HinfI	GANTC	5 cut(s)	256, 521, 656, 941, 988
HphI	GGTGA	4 cut(s)	149, 621, 812, 946
Hpy166II	GTNNAC	2 cut(s)	334, 676
Hpy188I	TCNGA	6 cut(s)	526, 661, 885, 916, 961, 1042
Hpy188III	TCNNGA	7 cut(s)	199, 253, 401, 648, 727, 893, 985
Hpy8I	GTNNAC	2 cut(s)	334, 676
HpyAV	CCTTC	4 cut(s)	82, 134, 202, 305
HpyCH4III	ACNGT	3 cut(s)	113, 305, 680
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	6 cut(s)	4, 101, 194, 346, 644, 1028
HpyF10VI	GCNNNNNNNGC	1 cut(s)	602
HpyF3I	CTNAG	5 cut(s)	441, 821, 882, 1039, 1051
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	6 cut(s)	101, 346, 377, 491, 836, 1025
Kzo9I	GATC	4 cut(s)	423, 889, 1047, 1063
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	2 cut(s)	593, 829
LpnPI	CCDG	9 cut(s)	392, 428, 570, 585, 633, 645, 689, 906, 917
Lsp1109I	GCAGC	2 cut(s)	113, 1011
LweI	GCATC	4 cut(s)	558, 631, 653, 918
MaeI	CTAG	3 cut(s)	401, 504, 666
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	2 cut(s)	272, 541
MalI	GATC	4 cut(s)	425, 891, 1049, 1065
MboI	GATC	4 cut(s)	423, 889, 1047, 1063
MflI	RGATCY	1 cut(s)	889
MhlI	GDGCHC	1 cut(s)	883
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	6 cut(s)	118, 189, 280, 349, 527, 793
MluNI	TGGCCA	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	1 cut(s)	764
MnlI	CCTC	7 cut(s)	66, 195, 723, 810, 820, 989, 1024
Mox20I	TGGCCA	1 cut(s)	378
Mph1103I	ATGCAT	1 cut(s)	646
MroXI	GAANNNNTTC	2 cut(s)	324, 396
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	1 cut(s)	11
MslI	CAYNNNNRTG	3 cut(s)	372, 492, 634
Msp20I	TGGCCA	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	389
Mva1269I	GAATGC	1 cut(s)	382
MvnI	CGCG	2 cut(s)	540, 751
MwoI	GCNNNNNNNGC	1 cut(s)	602
NcoI	CCATGG	1 cut(s)	487
NdeII	GATC	4 cut(s)	423, 889, 1047, 1063
NheI	GCTAGC	1 cut(s)	503
NlaIII	CATG	6 cut(s)	101, 346, 377, 491, 836, 1025
NmuCI	GTSAC	1 cut(s)	272
NsiI	ATGCAT	1 cut(s)	646
NspI	RCATGY	3 cut(s)	346, 836, 1025
PaeR7I	CTCGAG	1 cut(s)	725
PciSI	GCTCTTC	1 cut(s)	54
PctI	GAATGC	1 cut(s)	382
PdmI	GAANNNNTTC	2 cut(s)	324, 396
PfeI	GAWTC	4 cut(s)	256, 656, 941, 988
PkrI	GCNGC	2 cut(s)	103, 1001
PleI	GAGTC	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	515
PspPI	GGNCC	1 cut(s)	408
PsuI	RGATCY	1 cut(s)	889
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	4 cut(s)	335, 341, 677, 702
RsaNI	GTAC	4 cut(s)	334, 340, 676, 701
RseI	CAYNNNNRTG	3 cut(s)	372, 492, 634
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	2 cut(s)	102, 1000
Sau3AI	GATC	4 cut(s)	423, 889, 1047, 1063
Sau96I	GGNCC	1 cut(s)	408
SchI	GAGTC	1 cut(s)	515
SduI	GDGCHC	1 cut(s)	883
SfaNI	GCATC	4 cut(s)	558, 631, 653, 918
Sfr274I	CTCGAG	1 cut(s)	725
SinI	GGWCC	1 cut(s)	408
SlaI	CTCGAG	1 cut(s)	725
SmiMI	CAYNNNNRTG	3 cut(s)	372, 492, 634
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
Sse9I	AATT	6 cut(s)	118, 189, 280, 349, 527, 793
SsiI	CCGC	1 cut(s)	751
SspMI	CTAG	3 cut(s)	401, 504, 666
StyI	CCWWGG	1 cut(s)	487
TaaI	ACNGT	3 cut(s)	113, 305, 680
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	3 cut(s)	145, 252, 726
TasI	AATT	6 cut(s)	118, 189, 280, 349, 527, 793
TatI	WGTACW	2 cut(s)	339, 675
TfiI	GAWTC	4 cut(s)	256, 656, 941, 988
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	2 cut(s)	101, 999
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	5 cut(s)	86, 362, 434, 801, 954
TspRI	CASTG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	408
XapI	RAATTY	4 cut(s)	280, 349, 527, 793
XbaI	TCTAGA	1 cut(s)	400
XceI	RCATGY	3 cut(s)	346, 836, 1025
XhoI	CTCGAG	1 cut(s)	725
XmnI	GAANNNNTTC	2 cut(s)	324, 396
XspI	CTAG	3 cut(s)	401, 504, 666
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.