Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

5959174 .. 5962289

Gene Structure 3116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G17420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGACATCTCAGCTAAAACGAACTTTAACCAAGAGATACGGTGTTCTTGAACTGTGGGAGATCATAGTGATTGCTCTCTTTGCAGCCTTCATAGTAATCCTTGTCCTTTCAGTTTGGCTCAGCTTCCGTAAAAAGTCCAAAAGATCTAATGCTACAACGCTTCCTGTAACTCAAAGCCCTCGCTTTACCGAAGAAATAAAAGAAATAAGTGTTGATCATGGTTCATCTAACAACAATGGTACTTCTTACCAAACTCTTGATGAGAAATTCGTTGAGGACATCGAGAATGGCGATAAGTTCTCTGGTTCTTTGGAGAAAAAACCCCTGGTTGGGTCACATTTGCCTCCTAGTACTCCTTCAACAACAGCTCCTTCACCTCTCTTGGGTCTTCCTGAGGTTTCTCACATTGGTTGGGGTCATTGGTTCACTCTCCGTGACCTTCAACTCGCGACTAATCATTTCTCCAAGGAGAGTATCATCGGAGATGGTGGTTATGGAGTTGTTTACCATGGAACTTTGACTAACAAAACCCCTGTGGCTGTCAAAAAGTTGCTCAACAATCCAGGTCAAGCTGATAAAGATTTCAGAGTTGAGGTGGAAGCTATAGGACATGTCCGGCATAAGAACTTAGTTCGGCTTCTTGGATATTGCGTTGAAGGAACACATAGGATGCTGGTTTATGAGTACATGAACAATGGGAACTTAGAGCAATGGCTTCATGGAGACATGATTCACAAAGGGCATCTCACTTGGGAGGCTCGCATCAAAGTTCTTGTTGGCACTGCAAAGGCACTGGCTTATCTTCACGAAGCTATTGAGCCAAAAGTGGTGCATAGAGACATAAAATCAAGCAATATACTGATGGATGACAACTTTGACGCAAAGTTATCTGATTTCGGTCTTGCTAAATTGCTTGGAGCTGATTCAAATTACGTCAGTACTCGAGTTATGGGTACATTCGGGTATGTCGCACCTGAATACGCTAACTCTGGTCTCCTAAACGAAAAGAGCGATGTGTACAGCTATGGTGTTGTTCTCTTGGAAGCTATTACTGGAAGGTATCCAGTGGATTATGCGCGGCCTAAAGAAGAGGTGCATATGGTGGAGTGGTTAAAGCTAATGGTTCAACAGAAACAGTTTGAGGAAGTGGTGGATAAAGAGCTTGAGATCAAACCAACAACAAGCGAACTTAAACGAGCACTTTTGACAGCTTTAAGATGCGTTGATCCTGATGCAGACAAGAGGCCAAAGATGAGTCAAGTGGCTCGAATGCTTGAATCTGATGAATACCCTGTGATGCCTAGAGAGGAACGAAGAAGAAGGAGAAATCAGAACGCAGAGACGCATAGAGAAAGCACAGACACGAATAAAGATAATGATATAACAACAGATGCAAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

467

Amino Acids

52.8

Weight (kDa)

6.78

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	154 - 422	3.7e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	157 - 425	1.7e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	449, 1078
AciI	CCGC	1 cut(s)	1078
AclWI	GGATC	1 cut(s)	1220
AcsI	RAATTY	1 cut(s)	266
AfaI	GTAC	6 cut(s)	241, 352, 686, 940, 955, 1019
AfiI	CCNNNNNNNGG	3 cut(s)	329, 330, 383
AflIII	ACRYGT	1 cut(s)	610
AgsI	TTSAA	7 cut(s)	50, 360, 443, 656, 927, 1127, 1277
AjnI	CCWGG	2 cut(s)	324, 562
Alw21I	GWGCWC	1 cut(s)	1201
Alw26I	GTCTC	4 cut(s)	717, 831, 998, 1334
AlwI	GGATC	1 cut(s)	1220
Ama87I	CYCGRG	1 cut(s)	942
AoxI	GGCC	2 cut(s)	1079, 1244
ApeKI	GCWGC	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	1078
AsuHPI	GGTGA	1 cut(s)	366
AvaI	CYCGRG	1 cut(s)	942
AxyI	CCTNAGG	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	1201
BbvI	GCAGC	1 cut(s)	95
BccI	CCATC	2 cut(s)	479, 856
BciT130I	CCWGG	2 cut(s)	326, 564
BciVI	GTATCC	1 cut(s)	1071
BclI	TGATCA	1 cut(s)	214
BcoDI	GTCTC	4 cut(s)	717, 831, 998, 1334
BfaI	CTAG	2 cut(s)	348, 1302
BfmI	CTRYAG	1 cut(s)	603
BfuI	GTATCC	1 cut(s)	1071
BglII	AGATCT	1 cut(s)	143
BisI	GCNGC	2 cut(s)	84, 1079
BlpI	GCTNAGC	1 cut(s)	119
BlsI	GCNGC	2 cut(s)	85, 1080
BmcAI	AGTACT	2 cut(s)	352, 940
Bme1390I	CCNGG	2 cut(s)	326, 564
BmeT110I	CYCGRG	1 cut(s)	942
BmrFI	CCNGG	2 cut(s)	326, 564
BmsI	GCATC	7 cut(s)	660, 751, 771, 1208, 1222, 1287, 1381
BpiI	GAAGAC	1 cut(s)	380
Bpu1102I	GCTNAGC	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	1184
BsaI	GGTCTC	1 cut(s)	998
BsaJI	CCNNGG	3 cut(s)	324, 465, 508
BsaXI	ACNNNNNCTCC	2 cut(s)	352, 382
Bsc4I	CCNNNNNNNGG	3 cut(s)	329, 330, 383
Bse1I	ACTGG	3 cut(s)	798, 1057, 1064
Bse21I	CCTNAGG	1 cut(s)	393
Bse3DI	GCAATG	1 cut(s)	716
BseBI	CCWGG	2 cut(s)	326, 564
BseDI	CCNNGG	3 cut(s)	324, 465, 508
BseGI	GGATG	2 cut(s)	675, 871
BseLI	CCNNNNNNNGG	3 cut(s)	329, 330, 383
BseMI	GCAATG	1 cut(s)	716
BseMII	CTCAG	3 cut(s)	23, 133, 384
BseNI	ACTGG	3 cut(s)	798, 1057, 1064
BseXI	GCAGC	1 cut(s)	95
Bsh1236I	CGCG	2 cut(s)	449, 1078
BshFI	GGCC	2 cut(s)	1081, 1246
BsiHKAI	GWGCWC	1 cut(s)	1201
BsiHKCI	CYCGRG	1 cut(s)	942
BsiSI	CCGG	1 cut(s)	616
BslI	CCNNNNNNNGG	3 cut(s)	329, 330, 383
BsmAI	GTCTC	4 cut(s)	717, 831, 998, 1334
BsmBI	CGTCTC	1 cut(s)	1334
BsmI	GAATGC	1 cut(s)	1275
BsnI	GGCC	2 cut(s)	1081, 1246
Bso31I	GGTCTC	1 cut(s)	998
BsoBI	CYCGRG	1 cut(s)	942
Bsp1286I	GDGCHC	1 cut(s)	1201
Bsp1407I	TGTACA	1 cut(s)	1017
Bsp143I	GATC	5 cut(s)	60, 143, 214, 1167, 1225
Bsp1720I	GCTNAGC	1 cut(s)	119
Bsp19I	CCATGG	1 cut(s)	508
Bsp68I	TCGCGA	1 cut(s)	449
BspACI	CCGC	1 cut(s)	1078
BspANI	GGCC	2 cut(s)	1081, 1246
BspCNI	CTCAG	3 cut(s)	22, 132, 385
BspFNI	CGCG	2 cut(s)	449, 1078
BspPI	GGATC	1 cut(s)	1220
BspTNI	GGTCTC	1 cut(s)	998
BsrDI	GCAATG	1 cut(s)	716
BsrGI	TGTACA	1 cut(s)	1017
BsrI	ACTGG	3 cut(s)	798, 1057, 1064
BssECI	CCNNGG	3 cut(s)	324, 465, 508
BssMI	GATC	5 cut(s)	60, 143, 214, 1167, 1225
BssT1I	CCWWGG	2 cut(s)	465, 508
Bst2UI	CCWGG	2 cut(s)	326, 564
Bst4CI	ACNGT	3 cut(s)	41, 54, 1137
Bst6I	CTCTTC	1 cut(s)	1083
BstAUI	TGTACA	1 cut(s)	1017
BstC8I	GCNNGC	1 cut(s)	760
BstDEI	CTNAG	5 cut(s)	9, 119, 393, 628, 703
BstDSI	CCRYGG	1 cut(s)	508
BstF5I	GGATG	2 cut(s)	675, 871
BstFNI	CGCG	2 cut(s)	449, 1078
BstHHI	GCGC	1 cut(s)	1078
BstKTI	GATC	5 cut(s)	63, 146, 217, 1170, 1228
BstMAI	GTCTC	4 cut(s)	717, 831, 998, 1334
BstMBI	GATC	5 cut(s)	60, 143, 214, 1167, 1225
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	2 cut(s)	326, 564
BstNSI	RCATGY	1 cut(s)	614
BstSCI	CCNGG	2 cut(s)	324, 562
BstSFI	CTRYAG	1 cut(s)	603
BstUI	CGCG	2 cut(s)	449, 1078
BstV1I	GCAGC	1 cut(s)	95
BstV2I	GAAGAC	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
Bsu36I	CCTNAGG	1 cut(s)	393
BsuI	GTATCC	1 cut(s)	1071
BsuRI	GGCC	2 cut(s)	1081, 1246
BtgI	CCRYGG	1 cut(s)	508
BtgZI	GCGATG	1 cut(s)	1026
BtsCI	GGATG	2 cut(s)	675, 871
BtsI	GCAGTG	1 cut(s)	780
BtsIMutI	CAGTG	3 cut(s)	780, 791, 1071
BtuMI	TCGCGA	1 cut(s)	449
Cac8I	GCNNGC	1 cut(s)	760
CfoI	GCGC	1 cut(s)	1078
CseI	GACGC	2 cut(s)	887, 1351
Csp6I	GTAC	6 cut(s)	240, 351, 685, 939, 954, 1018
CviAII	CATG	6 cut(s)	218, 509, 611, 688, 719, 727
CviQI	GTAC	6 cut(s)	240, 351, 685, 939, 954, 1018
DdeI	CTNAG	5 cut(s)	9, 119, 393, 628, 703
DpnI	GATC	5 cut(s)	62, 145, 216, 1169, 1227
DpnII	GATC	5 cut(s)	60, 143, 214, 1167, 1225
Eam1104I	CTCTTC	1 cut(s)	1083
EarI	CTCTTC	1 cut(s)	1083
Eco130I	CCWWGG	2 cut(s)	465, 508
Eco31I	GGTCTC	1 cut(s)	998
Eco81I	CCTNAGG	1 cut(s)	393
Eco88I	CYCGRG	1 cut(s)	942
EcoRII	CCWGG	2 cut(s)	324, 562
EcoT14I	CCWWGG	2 cut(s)	465, 508
ErhI	CCWWGG	2 cut(s)	465, 508
Esp3I	CGTCTC	1 cut(s)	1334
FaeI	CATG	6 cut(s)	221, 512, 614, 691, 722, 730
FatI	CATG	6 cut(s)	217, 508, 610, 687, 718, 726
FauNDI	CATATG	1 cut(s)	1098
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	84, 1079
FokI	GGATG	2 cut(s)	682, 878
Fsp4HI	GCNGC	2 cut(s)	84, 1079
FspBI	CTAG	2 cut(s)	348, 1302
GlaI	GCGC	1 cut(s)	1077
GluI	GCNGC	2 cut(s)	84, 1079
HaeIII	GGCC	2 cut(s)	1081, 1246
HapII	CCGG	1 cut(s)	616
HgaI	GACGC	2 cut(s)	887, 1351
HhaI	GCGC	1 cut(s)	1078
Hin1II	CATG	6 cut(s)	221, 512, 614, 691, 722, 730
Hin6I	GCGC	1 cut(s)	1076
HinP1I	GCGC	1 cut(s)	1076
HinfI	GANTC	4 cut(s)	730, 923, 1255, 1277
HpaII	CCGG	1 cut(s)	616
HphI	GGTGA	1 cut(s)	366
Hpy166II	GTNNAC	3 cut(s)	426, 505, 1018
Hpy188I	TCNGA	5 cut(s)	482, 587, 892, 1282, 1332
Hpy188III	TCNNGA	7 cut(s)	47, 257, 283, 392, 448, 806, 1229
Hpy8I	GTNNAC	3 cut(s)	426, 505, 1018
HpyAV	CCTTC	7 cut(s)	97, 366, 381, 449, 650, 1050, 1314
HpyCH4III	ACNGT	3 cut(s)	41, 54, 1137
HpyCH4IV	ACGT	1 cut(s)	933
HpyCH4V	TGCA	6 cut(s)	83, 785, 832, 1096, 1235, 1394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	5 cut(s)	9, 119, 393, 628, 703
HpySE526I	ACGT	1 cut(s)	933
Hsp92II	CATG	6 cut(s)	221, 512, 614, 691, 722, 730
HspAI	GCGC	1 cut(s)	1076
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	5 cut(s)	60, 143, 214, 1167, 1225
LmnI	GCTCC	2 cut(s)	373, 917
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	7 cut(s)	660, 751, 771, 1208, 1222, 1287, 1381
MaeI	CTAG	2 cut(s)	348, 1302
MaeII	ACGT	1 cut(s)	933
MaeIII	GTNAC	3 cut(s)	166, 333, 434
MalI	GATC	5 cut(s)	62, 145, 216, 1169, 1227
MboI	GATC	5 cut(s)	60, 143, 214, 1167, 1225
MboII	GAAGA	6 cut(s)	203, 380, 794, 1100, 1326, 1329
MflI	RGATCY	1 cut(s)	143
MhlI	GDGCHC	1 cut(s)	1201
MluCI	AATT	3 cut(s)	266, 908, 928
MlyI	GAGTC	1 cut(s)	1264
MseI	TTAA	4 cut(s)	26, 1112, 1191, 1214
MspI	CCGG	1 cut(s)	616
MspR9I	CCNGG	2 cut(s)	326, 564
Mva1269I	GAATGC	1 cut(s)	1275
MvaI	CCWGG	2 cut(s)	326, 564
MvnI	CGCG	2 cut(s)	449, 1078
MwoI	GCNNNNNNNGC	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	508
NdeI	CATATG	1 cut(s)	1098
NdeII	GATC	5 cut(s)	60, 143, 214, 1167, 1225
NlaIII	CATG	6 cut(s)	221, 512, 614, 691, 722, 730
NmuCI	GTSAC	2 cut(s)	333, 434
NruI	TCGCGA	1 cut(s)	449
NspI	RCATGY	1 cut(s)	614
PaeR7I	CTCGAG	1 cut(s)	942
PciI	ACATGT	1 cut(s)	610
PcsI	WCGNNNNNNNCGW	2 cut(s)	288, 1008
PctI	GAATGC	1 cut(s)	1275
PfeI	GAWTC	3 cut(s)	730, 923, 1277
PkrI	GCNGC	2 cut(s)	85, 1080
PleI	GAGTC	1 cut(s)	1263
PpsI	GAGTC	1 cut(s)	1263
PscI	ACATGT	1 cut(s)	610
Psp6I	CCWGG	2 cut(s)	324, 562
PspGI	CCWGG	2 cut(s)	324, 562
PspXI	VCTCGAGB	1 cut(s)	942
PsuI	RGATCY	1 cut(s)	143
RruI	TCGCGA	1 cut(s)	449
RsaI	GTAC	6 cut(s)	241, 352, 686, 940, 955, 1019
RsaNI	GTAC	6 cut(s)	240, 351, 685, 939, 954, 1018
SaqAI	TTAA	4 cut(s)	26, 1112, 1191, 1214
SatI	GCNGC	2 cut(s)	84, 1079
Sau3AI	GATC	5 cut(s)	60, 143, 214, 1167, 1225
ScaI	AGTACT	2 cut(s)	352, 940
SchI	GAGTC	1 cut(s)	1264
ScrFI	CCNGG	2 cut(s)	326, 564
SduI	GDGCHC	1 cut(s)	1201
SfaNI	GCATC	7 cut(s)	660, 751, 771, 1208, 1222, 1287, 1381
SfcI	CTRYAG	1 cut(s)	603
Sfr274I	CTCGAG	1 cut(s)	942
SlaI	CTCGAG	1 cut(s)	942
SmlI	CTYRAG	2 cut(s)	942, 1163
SmoI	CTYRAG	2 cut(s)	942, 1163
Sse9I	AATT	3 cut(s)	266, 908, 928
SsiI	CCGC	1 cut(s)	1078
SspMI	CTAG	2 cut(s)	348, 1302
StyD4I	CCNGG	2 cut(s)	324, 562
StyI	CCWWGG	2 cut(s)	465, 508
TaaI	ACNGT	3 cut(s)	41, 54, 1137
TaiI	ACGT	1 cut(s)	936
TaqI	TCGA	3 cut(s)	282, 943, 1267
TaqII	GACCGA	1 cut(s)	887
TasI	AATT	3 cut(s)	266, 908, 928
TatI	WGTACW	4 cut(s)	350, 684, 938, 1017
TauI	GCSGC	1 cut(s)	1081
TfiI	GAWTC	3 cut(s)	730, 923, 1277
Tru1I	TTAA	4 cut(s)	26, 1112, 1191, 1214
Tru9I	TTAA	4 cut(s)	26, 1112, 1191, 1214
TscAI	CASTG	3 cut(s)	787, 798, 1071
TseFI	GTSAC	2 cut(s)	333, 434
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	2 cut(s)	333, 434
TspDTI	ATGAA	5 cut(s)	79, 213, 704, 707, 1299
TspGWI	ACGGA	2 cut(s)	116, 422
TspRI	CASTG	3 cut(s)	787, 798, 1071
XapI	RAATTY	1 cut(s)	266
XceI	RCATGY	1 cut(s)	614
XhoI	CTCGAG	1 cut(s)	942
XspI	CTAG	2 cut(s)	348, 1302
ZrmI	AGTACT	2 cut(s)	352, 940

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.