Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6593773 .. 6594977

Gene Structure 1205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G19070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGACTAATCTTGATGAGTTTCTTGAAGAGCTAAGTTCTATTGAATCACATTCTCAGAAAATCGTGAAGATAGATGAGCATTTAAAAAAGTTGGATGAAGAGACGAAAGAAGATGAAGATGAAGATGCGGCGAAGATAATTCAAGATCGGAGTACCGCGAGAGAAGCAGAAATTGCTCTACTTATGGATCTCCGTCAGAACTTTCTTCCACCACCATCGATGTCATCCTCCTCTCTTCAACCACCGTCATCGTCAACTCTCGCACCATCGTCATCATCCTCTCTTCAACCACCCGCACCGTTGATAGACTTCTTTCGGTCATCAGTGTCATACTCTCATCAACCACCGTCATCTTCAACTCTCGCAACATCATCGTCACCGTCTCTTCAACCACCGTCGATGTCATCCTCCTCTCTTCAACCACCCGCATCTTTGAGGGAATTCTTTACGTCGTCAGTGTCATACTCTCATCAGCCATCTTCATCTTCAACTCTCGCAACATCTTCGTTCTTTCCGTCGTCAATGCCATACTCTGTTCGACCTCCCGATTCGTCTGATCGACCATCTTTGAGGGAATTCTTTCCGTCGTCACCATCATCCTCTATTCAGCCACCCGAATCATCATCATCTAAGCGAGCACGGCTTAGTAACATCTTTCCGTCACCTTTATCCTCCTCTCCGTCACCGTTTGTTAACCCGTTTCTCCGTCCGCAGGCCCAAGAACCAACAATACCAAATTTCATAAACCCAATACCACAGATCTCTCCAGGCCTACCTGCTCTATTCCCAAACCCTAACCCTAATCCTAACCCTAACCCAATCCCAAACCCAATCCGAAACCCAGACTTGGTGTGGACAAATAGGCTTCAACTAGTGTTTGATGACGCAGTTGTCAGACTTGGGGGATTATTCAGTGCAACACCCAAAGCCATAAACGAACTAATTTCTGAAGAGGGTCTCACTGGTGACCAGATCCGTAGCCACTTACAAGTCTTGCGGGATCGTCAAAAGGCTATTGCAGACAAATTAGCCTTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

346

Amino Acids

37.71

Weight (kDa)

5.08

Isoelectric Point (pI)

86.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	890
Acc36I	ACCTGC	1 cut(s)	784
AccII	CGCG	1 cut(s)	158
AciI	CCGC	6 cut(s)	128, 156, 294, 426, 710, 997
AclWI	GGATC	3 cut(s)	195, 967, 1008
AcsI	RAATTY	3 cut(s)	440, 575, 736
AcuI	CTGAAG	1 cut(s)	969
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	2 cut(s)	712, 847
AhlI	ACTAGT	1 cut(s)	871
AjnI	CCWGG	1 cut(s)	766
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
Alw21I	GWGCWC	1 cut(s)	640
Alw26I	GTCTC	3 cut(s)	95, 387, 962
AlwI	GGATC	3 cut(s)	195, 967, 1008
AoxI	GGCC	2 cut(s)	714, 769
ApoI	RAATTY	3 cut(s)	440, 575, 736
Asp700I	GAANNNNTTC	1 cut(s)	579
AspS9I	GGNCC	1 cut(s)	715
AsuHPI	GGTGA	5 cut(s)	369, 582, 654, 675, 977
Bbv12I	GWGCWC	1 cut(s)	640
BccI	CCATC	5 cut(s)	223, 274, 484, 571, 601
BceAI	ACGGC	1 cut(s)	656
BcgI	CGANNNNNNTGC	4 cut(s)	354, 388, 486, 520
BciT130I	CCWGG	1 cut(s)	768
BcoDI	GTCTC	3 cut(s)	95, 387, 962
BcuI	ACTAGT	1 cut(s)	871
BfaI	CTAG	1 cut(s)	872
BfuAI	ACCTGC	1 cut(s)	784
BglII	AGATCT	1 cut(s)	759
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
Bme1390I	CCNGG	1 cut(s)	768
BmgT120I	GGNCC	1 cut(s)	715
BmrFI	CCNGG	1 cut(s)	768
BmsI	GCATC	2 cut(s)	115, 437
BpmI	CTGGAG	1 cut(s)	750
Bsa29I	ATCGAT	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	962
BsaJI	CCNNGG	1 cut(s)	1032
Bsc4I	CCNNNNNNNGG	2 cut(s)	712, 847
Bse1I	ACTGG	1 cut(s)	967
BseBI	CCWGG	1 cut(s)	768
BseCI	ATCGAT	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	1032
BseGI	GGATG	5 cut(s)	100, 224, 275, 404, 596
BseLI	CCNNNNNNNGG	2 cut(s)	712, 847
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	967
BseRI	GAGGAG	3 cut(s)	220, 400, 664
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	2 cut(s)	716, 771
BshVI	ATCGAT	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	640
BslI	CCNNNNNNNGG	2 cut(s)	712, 847
BsmAI	GTCTC	3 cut(s)	95, 387, 962
BsmBI	CGTCTC	2 cut(s)	95, 387
BsnI	GGCC	2 cut(s)	716, 771
Bso31I	GGTCTC	1 cut(s)	962
Bsp1286I	GDGCHC	1 cut(s)	640
Bsp143I	GATC	6 cut(s)	145, 187, 556, 759, 972, 1000
BspACI	CCGC	6 cut(s)	128, 156, 294, 426, 710, 997
BspANI	GGCC	2 cut(s)	716, 771
BspCNI	CTCAG	1 cut(s)	67
BspDI	ATCGAT	1 cut(s)	218
BspFNI	CGCG	1 cut(s)	158
BspMI	ACCTGC	1 cut(s)	784
BspPI	GGATC	3 cut(s)	195, 967, 1008
BspQI	GCTCTTC	1 cut(s)	21
BspTNI	GGTCTC	1 cut(s)	962
BsrI	ACTGG	1 cut(s)	967
BssECI	CCNNGG	1 cut(s)	1032
BssMI	GATC	6 cut(s)	145, 187, 556, 759, 972, 1000
BssT1I	CCWWGG	1 cut(s)	1032
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	6 cut(s)	246, 300, 348, 381, 396, 687
Bst6I	CTCTTC	7 cut(s)	21, 93, 240, 288, 390, 420, 945
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	636, 714
BstDEI	CTNAG	4 cut(s)	32, 54, 630, 644
BstEII	GGTNACC	1 cut(s)	965
BstF5I	GGATG	5 cut(s)	100, 224, 275, 404, 596
BstFNI	CGCG	1 cut(s)	158
BstKTI	GATC	6 cut(s)	148, 190, 559, 762, 975, 1003
BstMAI	GTCTC	3 cut(s)	95, 387, 962
BstMBI	GATC	6 cut(s)	145, 187, 556, 759, 972, 1000
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 173, 640
BstNI	CCWGG	1 cut(s)	768
BstPI	GGTNACC	1 cut(s)	965
BstSCI	CCNGG	1 cut(s)	766
BstUI	CGCG	1 cut(s)	158
BstX2I	RGATCY	3 cut(s)	187, 759, 972
BstYI	RGATCY	3 cut(s)	187, 759, 972
Bsu15I	ATCGAT	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	716, 771
BsuTUI	ATCGAT	1 cut(s)	218
BtsCI	GGATG	5 cut(s)	100, 224, 275, 404, 596
BtsIMutI	CAGTG	4 cut(s)	330, 462, 919, 960
BveI	ACCTGC	1 cut(s)	784
Cac8I	GCNNGC	2 cut(s)	636, 714
Cfr13I	GGNCC	1 cut(s)	715
ClaI	ATCGAT	1 cut(s)	218
CseI	GACGC	1 cut(s)	893
Csp6I	GTAC	1 cut(s)	153
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	4 cut(s)	32, 54, 630, 644
DpnI	GATC	6 cut(s)	147, 189, 558, 761, 974, 1002
DpnII	GATC	6 cut(s)	145, 187, 556, 759, 972, 1000
DraI	TTTAAA	1 cut(s)	84
DrdI	GACNNNNNNGTC	1 cut(s)	890
DseDI	GACNNNNNNGTC	1 cut(s)	890
Eam1104I	CTCTTC	7 cut(s)	21, 93, 240, 288, 390, 420, 945
EarI	CTCTTC	7 cut(s)	21, 93, 240, 288, 390, 420, 945
Eco130I	CCWWGG	1 cut(s)	1032
Eco147I	AGGCCT	1 cut(s)	771
Eco31I	GGTCTC	1 cut(s)	962
Eco57I	CTGAAG	1 cut(s)	969
Eco91I	GGTNACC	1 cut(s)	965
EcoO65I	GGTNACC	1 cut(s)	965
EcoRI	GAATTC	2 cut(s)	440, 575
EcoRII	CCWGG	1 cut(s)	766
EcoT14I	CCWWGG	1 cut(s)	1032
ErhI	CCWWGG	1 cut(s)	1032
Esp3I	CGTCTC	2 cut(s)	95, 387
FaiI	YATR	6 cut(s)	185, 331, 463, 529, 743, 932
FauI	CCCGC	3 cut(s)	301, 433, 990
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	5 cut(s)	107, 211, 262, 391, 583
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	1 cut(s)	872
GluI	GCNGC	1 cut(s)	129
GsuI	CTGGAG	1 cut(s)	750
HaeIII	GGCC	2 cut(s)	716, 771
HgaI	GACGC	1 cut(s)	893
HincII	GTYRAC	2 cut(s)	255, 694
HindII	GTYRAC	2 cut(s)	255, 694
HinfI	GANTC	3 cut(s)	44, 548, 617
HpaI	GTTAAC	1 cut(s)	694
HphI	GGTGA	5 cut(s)	369, 582, 654, 675, 977
Hpy166II	GTNNAC	3 cut(s)	255, 694, 855
Hpy188I	TCNGA	7 cut(s)	57, 150, 198, 556, 836, 896, 949
Hpy188III	TCNNGA	5 cut(s)	11, 23, 64, 143, 545
Hpy8I	GTNNAC	3 cut(s)	255, 694, 855
Hpy99I	CGWCG	4 cut(s)	400, 454, 520, 589
HpyCH4III	ACNGT	6 cut(s)	246, 300, 348, 381, 396, 687
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	2 cut(s)	917, 1019
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 173, 640
HpyF3I	CTNAG	4 cut(s)	32, 54, 630, 644
HpySE526I	ACGT	1 cut(s)	449
KspAI	GTTAAC	1 cut(s)	694
Kzo9I	GATC	6 cut(s)	145, 187, 556, 759, 972, 1000
LguI	GCTCTTC	1 cut(s)	21
LpnPI	CCDG	7 cut(s)	698, 753, 780, 789, 855, 948, 983
LweI	GCATC	2 cut(s)	115, 437
MaeI	CTAG	1 cut(s)	872
MaeII	ACGT	1 cut(s)	449
MaeIII	GTNAC	6 cut(s)	375, 588, 647, 660, 681, 965
MalI	GATC	6 cut(s)	147, 189, 558, 761, 974, 1002
MboI	GATC	6 cut(s)	145, 187, 556, 759, 972, 1000
MflI	RGATCY	3 cut(s)	187, 759, 972
MhlI	GDGCHC	1 cut(s)	640
MluCI	AATT	7 cut(s)	138, 171, 440, 575, 736, 942, 1025
MmeI	TCCRAC	1 cut(s)	72
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	2 cut(s)	83, 693
MspR9I	CCNGG	1 cut(s)	768
MvaI	CCWGG	1 cut(s)	768
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	3 cut(s)	164, 173, 640
NdeII	GATC	6 cut(s)	145, 187, 556, 759, 972, 1000
NmuCI	GTSAC	5 cut(s)	375, 588, 660, 681, 965
PceI	AGGCCT	1 cut(s)	771
PciSI	GCTCTTC	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	512
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	3 cut(s)	44, 548, 617
PkrI	GCNGC	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	766
PspEI	GGTNACC	1 cut(s)	965
PspGI	CCWGG	1 cut(s)	766
PspPI	GGNCC	1 cut(s)	715
PsrI	GAACNNNNNNTAC	2 cut(s)	714, 746
PsuI	RGATCY	3 cut(s)	187, 759, 972
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	83, 693
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	6 cut(s)	145, 187, 556, 759, 972, 1000
Sau96I	GGNCC	1 cut(s)	715
ScrFI	CCNGG	1 cut(s)	768
SduI	GDGCHC	1 cut(s)	640
SetI	ASST	5 cut(s)	33, 452, 544, 667, 778
SfaNI	GCATC	2 cut(s)	115, 437
SpeI	ACTAGT	1 cut(s)	871
Sse9I	AATT	7 cut(s)	138, 171, 440, 575, 736, 942, 1025
SseBI	AGGCCT	1 cut(s)	771
SsiI	CCGC	6 cut(s)	128, 156, 294, 426, 710, 997
SspMI	CTAG	1 cut(s)	872
StuI	AGGCCT	1 cut(s)	771
StyD4I	CCNGG	1 cut(s)	766
StyI	CCWWGG	1 cut(s)	1032
TaaI	ACNGT	6 cut(s)	246, 300, 348, 381, 396, 687
TaiI	ACGT	1 cut(s)	452
TaqI	TCGA	4 cut(s)	218, 398, 538, 559
TaqII	GACCGA	1 cut(s)	306
TasI	AATT	7 cut(s)	138, 171, 440, 575, 736, 942, 1025
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	3 cut(s)	44, 548, 617
Tru1I	TTAA	2 cut(s)	83, 693
Tru9I	TTAA	2 cut(s)	83, 693
TscAI	CASTG	4 cut(s)	330, 462, 919, 967
TseFI	GTSAC	5 cut(s)	375, 588, 660, 681, 965
Tsp45I	GTSAC	5 cut(s)	375, 588, 660, 681, 965
TspDTI	ATGAA	5 cut(s)	111, 129, 135, 471, 730
TspGWI	ACGGA	7 cut(s)	182, 504, 573, 648, 669, 695, 965
TspRI	CASTG	4 cut(s)	330, 462, 919, 967
XapI	RAATTY	3 cut(s)	440, 575, 736
XcmI	CCANNNNNNNNNTGG	1 cut(s)	849
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	1 cut(s)	872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.